# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000579
#=GF DE Homeodomain-like transcriptional regulator
#=GF AC 1.10.10.60/FF/000579
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.554
#=GS Q9FFH1/15-91      AC Q9FFH1
#=GS Q9FFH1/15-91      OS Arabidopsis thaliana
#=GS Q9FFH1/15-91      DE Homeobox-DDT domain protein RLT2
#=GS Q9FFH1/15-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FFH1/15-91      DR GO; GO:0003700; GO:0005515; GO:0005634; GO:0010228; GO:0043565; GO:0045892; 
#=GS F4HY56/24-100     AC F4HY56
#=GS F4HY56/24-100     OS Arabidopsis thaliana
#=GS F4HY56/24-100     DE Homeobox-DDT domain protein RLT1
#=GS F4HY56/24-100     DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4HY56/24-100     DR GO; GO:0003700; GO:0005515; GO:0010228; GO:0045892; GO:0048510; 
#=GS F4JI72/10-92      AC F4JI72
#=GS F4JI72/10-92      OS Arabidopsis thaliana
#=GS F4JI72/10-92      DE Homeodomain-like superfamily protein
#=GS F4JI72/10-92      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4JI72/10-92      DR GO; GO:0003700; GO:0005515; 
#=GS A0A178UUZ6/10-92  AC A0A178UUZ6
#=GS A0A178UUZ6/10-92  OS Arabidopsis thaliana
#=GS A0A178UUZ6/10-92  DE Uncharacterized protein
#=GS A0A178UUZ6/10-92  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4K8S9/15-91      AC F4K8S9
#=GS F4K8S9/15-91      OS Arabidopsis thaliana
#=GS F4K8S9/15-91      DE Homeodomain-like transcriptional regulator
#=GS F4K8S9/15-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A2K1J8P1/11-82  AC A0A2K1J8P1
#=GS A0A2K1J8P1/11-82  OS Physcomitrella patens
#=GS A0A2K1J8P1/11-82  DE Uncharacterized protein
#=GS A0A2K1J8P1/11-82  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A9RKW7/308-379    AC A9RKW7
#=GS A9RKW7/308-379    OS Physcomitrella patens
#=GS A9RKW7/308-379    DE Predicted protein
#=GS A9RKW7/308-379    DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A0A0D3E089/11-92  AC A0A0D3E089
#=GS A0A0D3E089/11-92  OS Brassica oleracea var. oleracea
#=GS A0A0D3E089/11-92  DE Uncharacterized protein
#=GS A0A0D3E089/11-92  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS D7KCW8/25-101     AC D7KCW8
#=GS D7KCW8/25-101     OS Arabidopsis lyrata subsp. lyrata
#=GS D7KCW8/25-101     DE HB-1
#=GS D7KCW8/25-101     DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF SQ 9
Q9FFH1/15-91              -------------GESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERKSTTPSKRQRKELVTPTA
F4HY56/24-100             KKKKIDNNSSSKDGRVKPKRQMKTPFQLETLEKVYSEEKYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKKDGQ-------------S
F4JI72/10-92              A------DGDKASTENSKKRKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHVKEDGNAIGSQ-DRSS
A0A178UUZ6/10-92          A------DGDKASTENSKKRKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHVKEDGNAIGSQ-DRSS
F4K8S9/15-91              -------------GESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERKSTTPSKRQRKELVTPTA
A0A2K1J8P1/11-82          P------------DDHNLKRRMKTPVQLEALERVFAEDRYPAEAVRAELSTQLNLSDKQLQMWFCHRRLKDRKGKDEDSTNVN------A
A9RKW7/308-379            P------------DDHNLKRRMKTPVQLEALERVFAEDRYPAEAVRAELSTQLNLSDKQLQMWFCHRRLKDRKGKDEDSTNVN------A
A0A0D3E089/11-92          -------DGDKHSAENSKKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKRSVKEDGNNIGSQ-DRSS
D7KCW8/25-101             KKKKIDNSSSKDGGRVKPKRQMKTPFQLETLEKVYSEETYPSEATRADLSEKLDLSDRQLQMWFCHRRLKDKKDGQ-------------S
#=GC scorecons            100000011110145343996699639655995475654995954765764565967696559999999977733333222221101116
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