# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000504
#=GF DE Transcription factor RFX3
#=GF AC 1.10.10.60/FF/000504
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 59.259
#=GS E9G1I5/215-227_284-349      AC E9G1I5
#=GS E9G1I5/215-227_284-349      OS Daphnia pulex
#=GS E9G1I5/215-227_284-349      DE Putative homeotic HOX3 protein
#=GS E9G1I5/215-227_284-349      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS Q3V612/50-157               AC Q3V612
#=GS Q3V612/50-157               OS Oryzias latipes
#=GS Q3V612/50-157               DE HoxB3b
#=GS Q3V612/50-157               DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Atherinomorphae; Beloniformes; Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes; 
#=GS P50901/93-195               AC P50901
#=GS P50901/93-195               OS Branchiostoma floridae
#=GS P50901/93-195               DE Homeobox protein HOX3
#=GS P50901/93-195               DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS G1KWG6/1-98                 AC G1KWG6
#=GS G1KWG6/1-98                 OS Anolis carolinensis
#=GS G1KWG6/1-98                 DE Uncharacterized protein
#=GS G1KWG6/1-98                 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; 
#=GS I7C8S8/85-187               AC I7C8S8
#=GS I7C8S8/85-187               OS Branchiostoma lanceolatum
#=GS I7C8S8/85-187               DE Homeodomain-containing protein Hox3
#=GS I7C8S8/85-187               DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma lanceolatum; 
#=GS A0A164L921/308-321_383-448  AC A0A164L921
#=GS A0A164L921/308-321_383-448  OS Daphnia magna
#=GS A0A164L921/308-321_383-448  DE Homeobox BarH 2-like protein
#=GS A0A164L921/308-321_383-448  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS C3XTD7/189-291              AC C3XTD7
#=GS C3XTD7/189-291              OS Branchiostoma floridae
#=GS C3XTD7/189-291              DE Uncharacterized protein
#=GS C3XTD7/189-291              DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS A0A0P5QD40/69-82_144-209    AC A0A0P5QD40
#=GS A0A0P5QD40/69-82_144-209    OS Daphnia magna
#=GS A0A0P5QD40/69-82_144-209    DE Putative Transcription factor RFX3
#=GS A0A0P5QD40/69-82_144-209    DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P5USP8/254-267_329-394  AC A0A0P5USP8
#=GS A0A0P5USP8/254-267_329-394  OS Daphnia magna
#=GS A0A0P5USP8/254-267_329-394  DE Transcription factor RFX3
#=GS A0A0P5USP8/254-267_329-394  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P5NBU7/50-63_125-190    AC A0A0P5NBU7
#=GS A0A0P5NBU7/50-63_125-190    OS Daphnia magna
#=GS A0A0P5NBU7/50-63_125-190    DE Transcription factor RFX3
#=GS A0A0P5NBU7/50-63_125-190    DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0N8A7M2/218-231_293-358  AC A0A0N8A7M2
#=GS A0A0N8A7M2/218-231_293-358  OS Daphnia magna
#=GS A0A0N8A7M2/218-231_293-358  DE Transcription factor RFX3
#=GS A0A0N8A7M2/218-231_293-358  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P6F5L4/208-221_283-348  AC A0A0P6F5L4
#=GS A0A0P6F5L4/208-221_283-348  OS Daphnia magna
#=GS A0A0P6F5L4/208-221_283-348  DE Transcription factor RFX3
#=GS A0A0P6F5L4/208-221_283-348  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P5H4L5/44-57_119-184    AC A0A0P5H4L5
#=GS A0A0P5H4L5/44-57_119-184    OS Daphnia magna
#=GS A0A0P5H4L5/44-57_119-184    DE Transcription factor RFX3
#=GS A0A0P5H4L5/44-57_119-184    DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P6DWP4/92-105_167-232   AC A0A0P6DWP4
#=GS A0A0P6DWP4/92-105_167-232   OS Daphnia magna
#=GS A0A0P6DWP4/92-105_167-232   DE Transcription factor RFX3
#=GS A0A0P6DWP4/92-105_167-232   DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GF SQ 14
E9G1I5/215-227_284-349              -LAKDMIYPWMRDT-----------------------SPEQP------AKRARTAYTSAQLVELEKEFHFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
Q3V612/50-157                       FTVSKTIFPWMKESRHSEHKPDSRISALIFCAFLPTDDDKAPN-ATLASKRTRTAYTSAQLVELEKEFHFSRYLCRPRRVEMASLLNLNERQIKIWFQNRRMKQKKDQR
P50901/93-195                       -LANTKIYPWMKESRQNSKQRQQPNLSV-----GTTEPGESPGLGGAAGKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAAMLNLTERQIKIWFQNRRMKYKKEQK
G1KWG6/1-98                         ----KRVFPWMKETRQNTKRDSSLPSST-----EHSSDPGSPP-HLSSSKRLRTAYTHTQLVELEKEFHFNRYLCRPRRLEMARLLRLSERQIKIWFQNRRMKYKKD-I
I7C8S8/85-187                       -LANTKIYPWMKESRRNSKQRQPTNLSV-----GTTETGESPGLGGAAGKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAAMLNLTERQIKIWFQNRRMKYKKEQK
A0A164L921/308-321_383-448          TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
C3XTD7/189-291                      -LANTKIYPWMKESRQNSKQRQQPNLSV-----GTTEPGESPGLGGAAGKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAAMLNLTERQIKIWFQNRRMKYKKEQK
A0A0P5QD40/69-82_144-209            TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0P5USP8/254-267_329-394          TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0P5NBU7/50-63_125-190            TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0N8A7M2/218-231_293-358          TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0P6F5L4/208-221_283-348          TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0P5H4L5/44-57_119-184            TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
A0A0P6DWP4/92-105_167-232           TAAKDTIYPWMRET-----------------------SPEQP------AKRARTAYTSAQLVELEKEFLFNRYLCRPRRIEMATLLNLTERQIKIWFQNRRMKFKKEQK
#=GC scorecons                      1353448799978621111111100111000000111446491010115996999997799999999959799999999699947979699999999999999599766
#=GC scorecons_70                   ______*******__________________________*_*_______*******************_**************_*******************_*****
#=GC scorecons_80                   ______*****_*____________________________*_______**_****************_**********_***__***_**************_***__
#=GC scorecons_90                   ______*_***_*____________________________*_______**_*****__*********_*_********_***__*_*_**************_**___
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