# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000463
#=GF DE RNA polymerase sigma-54 factor
#=GF AC 1.10.10.60/FF/000463
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 52.173
#=GS Q74BZ1/414-478      AC Q74BZ1
#=GS Q74BZ1/414-478      OS Geobacter sulfurreducens PCA
#=GS Q74BZ1/414-478      DE RNA polymerase sigma-54 factor
#=GS Q74BZ1/414-478      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GS Q74BZ1/414-478      DR GO; GO:0006355; 
#=GS Q81X71/367-432      AC Q81X71
#=GS Q81X71/367-432      OS Bacillus anthracis
#=GS Q81X71/367-432      DE RNA polymerase sigma-54 factor
#=GS Q81X71/367-432      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis; 
#=GS Q81X71/367-432      DR GO; GO:0006352; GO:0016987; 
#=GS A0A2S5ZMB8/367-432  AC A0A2S5ZMB8
#=GS A0A2S5ZMB8/367-432  OS Escherichia coli
#=GS A0A2S5ZMB8/367-432  DE RNA polymerase sigma-54 factor
#=GS A0A2S5ZMB8/367-432  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0U0IEW1/367-432  AC A0A0U0IEW1
#=GS A0A0U0IEW1/367-432  OS Streptococcus pneumoniae
#=GS A0A0U0IEW1/367-432  DE RNA polymerase factor sigma-54
#=GS A0A0U0IEW1/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae; 
#=GS A0A229MJ93/367-432  AC A0A229MJ93
#=GS A0A229MJ93/367-432  OS Bacillus sp. KbaL1
#=GS A0A229MJ93/367-432  DE RNA polymerase sigma-54 factor
#=GS A0A229MJ93/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sp. KbaL1; 
#=GS A0A0F5RMS7/367-432  AC A0A0F5RMS7
#=GS A0A0F5RMS7/367-432  OS Bacillus sp. UMTAT18
#=GS A0A0F5RMS7/367-432  DE RNA polymerase factor sigma-54
#=GS A0A0F5RMS7/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sp. UMTAT18; 
#=GS A0A3Q8RBY8/367-432  AC A0A3Q8RBY8
#=GS A0A3Q8RBY8/367-432  OS Bacillus wiedmannii bv. thuringiensis
#=GS A0A3Q8RBY8/367-432  DE RNA polymerase factor sigma-54
#=GS A0A3Q8RBY8/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus wiedmannii; 
#=GS Q815K3/367-432      AC Q815K3
#=GS Q815K3/367-432      OS Bacillus cereus ATCC 14579
#=GS Q815K3/367-432      DE RNA polymerase sigma-54 factor rpoN
#=GS Q815K3/367-432      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus; 
#=GS A0A2C2HK24/367-432  AC A0A2C2HK24
#=GS A0A2C2HK24/367-432  OS Bacillus thuringiensis
#=GS A0A2C2HK24/367-432  DE RNA polymerase sigma-54 factor
#=GS A0A2C2HK24/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus thuringiensis; 
#=GS A0A073KFI0/367-432  AC A0A073KFI0
#=GS A0A073KFI0/367-432  OS Bacillus gaemokensis
#=GS A0A073KFI0/367-432  DE RNA polymerase sigma54 factor
#=GS A0A073KFI0/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus gaemokensis; 
#=GS Q39W55/417-480      AC Q39W55
#=GS Q39W55/417-480      OS Geobacter metallireducens GS-15
#=GS Q39W55/417-480      DE RNA polymerase sigma-54 factor
#=GS Q39W55/417-480      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter metallireducens; 
#=GS A0A3P1U0N6/367-432  AC A0A3P1U0N6
#=GS A0A3P1U0N6/367-432  OS Bacillus anthracis
#=GS A0A3P1U0N6/367-432  DE RNA polymerase sigma-54 factor
#=GS A0A3P1U0N6/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis; 
#=GS C2T8E9/367-432      AC C2T8E9
#=GS C2T8E9/367-432      OS Bacillus cereus BDRD-Cer4
#=GS C2T8E9/367-432      DE RNA polymerase sigma-54 factor
#=GS C2T8E9/367-432      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus; 
#=GS J8IA38/367-432      AC J8IA38
#=GS J8IA38/367-432      OS Bacillus cereus VD166
#=GS J8IA38/367-432      DE RNA polymerase sigma-54 factor
#=GS J8IA38/367-432      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus; 
#=GS A0A162QY64/367-432  AC A0A162QY64
#=GS A0A162QY64/367-432  OS Bacillus cereus
#=GS A0A162QY64/367-432  DE RNA polymerase sigma-54 factor
#=GS A0A162QY64/367-432  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus; 
#=GS A0A0T8CMK5/289-354  AC A0A0T8CMK5
#=GS A0A0T8CMK5/289-354  OS Streptococcus pneumoniae
#=GS A0A0T8CMK5/289-354  DE RNA polymerase factor sigma-54
#=GS A0A0T8CMK5/289-354  DR ORG; Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae; 
#=GF SQ 16
Q74BZ1/414-478              TEGDFIASESVKNKIKEIVDSEDPRKPYSDQRIAELL-SAHTINIARRTVTKYREMLKIGSSSERK
Q81X71/367-432              TEDEAVSTKRVKQFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A2S5ZMB8/367-432          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A0U0IEW1/367-432          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A229MJ93/367-432          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A0F5RMS7/367-432          TEDEAVSTKRVKQFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A3Q8RBY8/367-432          TEDEAVSTKRVKRFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQLHIPASSLRK
Q815K3/367-432              TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A2C2HK24/367-432          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A073KFI0/367-432          MEDEAVSTKRVKQFIQTFVEQENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQLHIPASSLRK
Q39W55/417-480              -EGDFIASESVKNKIKEIVEAEDPRKPYSDQRIADLL-SAHSINIARRTVTKYREMLRIGSSSERK
A0A3P1U0N6/367-432          TEDEAVSTKRVKQFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
C2T8E9/367-432              TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
J8IA38/367-432              TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A162QY64/367-432          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
A0A0T8CMK5/289-354          TEDEAVSTKRVKQFIQTLIGAEDKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRK
#=GC scorecons              496747666599549655756975799599979659935594959699996999956595699499
#=GC scorecons_70           _*_*_*____**__**__*__**_***_*****__**___*_*_*_*********_*_*__**_**
#=GC scorecons_80           _*________**__*______*___**_***_*__**___*_*_*_****_****___*__**_**
#=GC scorecons_90           _*________**__*______*___**_***_*__**___*_*_*_****_****___*__**_**
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