# STOCKHOLM 1.0 #=GF ID 1.10.10.60/FF/000448 #=GF DE LIM/homeobox protein Lhx4 #=GF AC 1.10.10.60/FF/000448 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 71.343 #=GS A7RW85/122-184 AC A7RW85 #=GS A7RW85/122-184 OS Nematostella vectensis #=GS A7RW85/122-184 DE Predicted protein #=GS A7RW85/122-184 DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; #=GS T1EJP4/71-130 AC T1EJP4 #=GS T1EJP4/71-130 OS Helobdella robusta #=GS T1EJP4/71-130 DE Uncharacterized protein #=GS T1EJP4/71-130 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS H3FHA5/113-175 AC H3FHA5 #=GS H3FHA5/113-175 OS Pristionchus pacificus #=GS H3FHA5/113-175 DE Uncharacterized protein #=GS H3FHA5/113-175 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; #=GS B7QNE7/83-145 AC B7QNE7 #=GS B7QNE7/83-145 OS Ixodes scapularis #=GS B7QNE7/83-145 DE Lim homeobox protein, putative #=GS B7QNE7/83-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS W5LWI5/83-142 AC W5LWI5 #=GS W5LWI5/83-142 OS Lepisosteus oculatus #=GS W5LWI5/83-142 DE Uncharacterized protein #=GS W5LWI5/83-142 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; #=GS H3AL72/86-137 AC H3AL72 #=GS H3AL72/86-137 OS Latimeria chalumnae #=GS H3AL72/86-137 DE Uncharacterized protein #=GS H3AL72/86-137 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Coelacanthiformes; Coelacanthidae; Latimeria; Latimeria chalumnae; #=GS A0A218V538/121-159_190-202 AC A0A218V538 #=GS A0A218V538/121-159_190-202 OS Lonchura striata domestica #=GS A0A218V538/121-159_190-202 DE LIM/homeobox protein Lhx4 #=GS A0A218V538/121-159_190-202 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura; Lonchura striata; Lonchura striata domestica; #=GS H9GMK3/84-134 AC H9GMK3 #=GS H9GMK3/84-134 OS Anolis carolinensis #=GS H9GMK3/84-134 DE Uncharacterized protein #=GS H9GMK3/84-134 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; #=GS A0A2K5ZKA2/117-168 AC A0A2K5ZKA2 #=GS A0A2K5ZKA2/117-168 OS Mandrillus leucophaeus #=GS A0A2K5ZKA2/117-168 DE Uncharacterized protein #=GS A0A2K5ZKA2/117-168 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; #=GS A0A2U4CQD1/284-335 AC A0A2U4CQD1 #=GS A0A2U4CQD1/284-335 OS Tursiops truncatus #=GS A0A2U4CQD1/284-335 DE LIM/homeobox protein Lhx4 #=GS A0A2U4CQD1/284-335 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Delphinidae; Tursiops; Tursiops truncatus; #=GS A0A0N8JW28/95-146 AC A0A0N8JW28 #=GS A0A0N8JW28/95-146 OS Scleropages formosus #=GS A0A0N8JW28/95-146 DE Uncharacterized protein #=GS A0A0N8JW28/95-146 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossiformes; Osteoglossidae; Scleropages; Scleropages formosus; #=GS A0A1U8C1S6/93-144 AC A0A1U8C1S6 #=GS A0A1U8C1S6/93-144 OS Mesocricetus auratus #=GS A0A1U8C1S6/93-144 DE LIM/homeobox protein Lhx4 #=GS A0A1U8C1S6/93-144 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Mesocricetus; Mesocricetus auratus; #=GS A0A146VE15/190-241 AC A0A146VE15 #=GS A0A146VE15/190-241 OS Fundulus heteroclitus #=GS A0A146VE15/190-241 DE LIM/homeobox protein Lhx4 #=GS A0A146VE15/190-241 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Fundulidae; Fundulus; Fundulus heteroclitus; #=GS A0A3Q2DK09/127-175 AC A0A3Q2DK09 #=GS A0A3Q2DK09/127-175 OS Cyprinodon variegatus #=GS A0A3Q2DK09/127-175 DE Uncharacterized protein #=GS A0A3Q2DK09/127-175 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Cyprinodontidae; Cyprinodontinae; Cyprinodontini; Cyprinodon; Cyprinodon variegatus; #=GS A0A1S4M4I0/83-145 AC A0A1S4M4I0 #=GS A0A1S4M4I0/83-145 OS Ixodes scapularis #=GS A0A1S4M4I0/83-145 DE Lim homeobox protein, putative #=GS A0A1S4M4I0/83-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS W5LWD4/83-142 AC W5LWD4 #=GS W5LWD4/83-142 OS Lepisosteus oculatus #=GS W5LWD4/83-142 DE Uncharacterized protein #=GS W5LWD4/83-142 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; #=GS A0A2U4APX7/101-149 AC A0A2U4APX7 #=GS A0A2U4APX7/101-149 OS Tursiops truncatus #=GS A0A2U4APX7/101-149 DE LIM/homeobox protein Lhx3 #=GS A0A2U4APX7/101-149 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Delphinidae; Tursiops; Tursiops truncatus; #=GS B7PGI9/106-153 AC B7PGI9 #=GS B7PGI9/106-153 OS Ixodes scapularis #=GS B7PGI9/106-153 DE Lhx3, putative #=GS B7PGI9/106-153 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GF SQ 18 A7RW85/122-184 DDKKGPKRPRTILTSQQRKVFKSAFEISSKPCRKVREELSRETGLSVRVVQVWFQNQRAKVQK---- T1EJP4/71-130 -QSKGPKRPRTILTTSQRKKFKSSFEVNPKPCRKVREALAAETGLSVRVVQVWFQNQRAKV------ H3FHA5/113-175 ----TPKRPRTILNAQQRRQFKAAFERSPKPCRKVREQLAKETGLSVRVVQVWFQNQRAKMKKQQRK B7QNE7/83-145 --RRGPKRPRTILTTAQRRAFKASFEISQKPCRKVRETLAKETGLSVRIVQVWFQNQRAKVRAPL-- W5LWI5/83-142 ----RSKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKVRIT--- H3AL72/86-137 ------------ITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- A0A218V538/121-159_190-202 ------------ITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- H9GMK3/84-134 -----------TITAKQLETLKSAYNNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK----- A0A2K5ZKA2/117-168 ------------ITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- A0A2U4CQD1/284-335 ------------ITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- A0A0N8JW28/95-146 ------------ITAKQLETLKNAYKKSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRM--- A0A1U8C1S6/93-144 ------------ITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- A0A146VE15/190-241 ------------ITAKQLETLKSAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL--- A0A3Q2DK09/127-175 -----------------LETLKSAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK- A0A1S4M4I0/83-145 --RRGPKRPRTILTTAQRRAFKASFEISQKPCRKVRETLAKETGLSVRIVQVWFQNQRAKVRAPL-- W5LWD4/83-142 ----RSKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKVRIT--- A0A2U4APX7/101-149 -----------------LETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK- B7PGI9/106-153 ------------------ETLKSAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK- #=GC scorecons 0000111111124543645569567548599596999596489995698999999969994532000 #=GC scorecons_70 ____________________**_**__*_**_*_***_*__****_**************_______ #=GC scorecons_80 _____________________*__*__*_**_*_***_*__****__*********_***_______ #=GC scorecons_90 _____________________*_____*_**_*_***_*__****__*_*******_***_______ //