# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000426
#=GF DE NK3 homeobox 1
#=GF AC 1.10.10.60/FF/000426
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 45.356
#=GS P97436/86-186       AC P97436
#=GS P97436/86-186       OS Mus musculus
#=GS P97436/86-186       DE Homeobox protein Nkx-3.1
#=GS P97436/86-186       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P97436/86-186       DR GO; GO:0000976; GO:0000978; GO:0001655; GO:0001656; GO:0001756; GO:0001934; GO:0003677; GO:0003700; GO:0004879; GO:0005515; GO:0005634; GO:0006919; GO:0007431; GO:0007507; GO:0008134; GO:0008284; GO:0008285; GO:0008584; GO:0008656; GO:0010628; GO:0010629; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0030850; GO:0032880; GO:0033574; GO:0035260; GO:0035907; GO:0042826; GO:0043280; GO:0043491; GO:0043565; GO:0043569; GO:0043621; GO:0044212; GO:0045892; GO:0045893; GO:0045930; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051091; GO:0051781; GO:0060037; GO:0060442; GO:0060664; GO:0060770; GO:0071383; GO:0071456; GO:0071850; GO:0071899; GO:0090734; GO:0097162; GO:2000836; GO:2001022; GO:2001235; GO:2001244; 
#=GS Q99801/104-184      AC Q99801
#=GS Q99801/104-184      OS Homo sapiens
#=GS Q99801/104-184      DE Homeobox protein Nkx-3.1
#=GS Q99801/104-184      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q99801/104-184      DR GO; GO:0000976; GO:0000978; GO:0000981; GO:0001934; GO:0003700; GO:0004879; GO:0005515; GO:0005634; GO:0006355; GO:0006919; GO:0007275; GO:0007431; GO:0008134; GO:0008284; GO:0008285; GO:0008656; GO:0010628; GO:0010629; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0032880; GO:0033574; GO:0035690; GO:0042826; GO:0043280; GO:0043491; GO:0043565; GO:0043569; GO:0043621; GO:0044212; GO:0045892; GO:0045893; GO:0045930; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051781; GO:0060442; GO:0060664; GO:0060770; GO:0071347; GO:0071356; GO:0071383; GO:0071456; GO:0071850; GO:0071899; GO:0090734; GO:2000836; GO:2001022; GO:2001235; GO:2001244; 
#=GS F7ENZ5/21-130       AC F7ENZ5
#=GS F7ENZ5/21-130       OS Ornithorhynchus anatinus
#=GS F7ENZ5/21-130       DE NK3 homeobox 1
#=GS F7ENZ5/21-130       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS F7ENZ5/21-130       DR GO; GO:0000976; GO:0000978; GO:0001934; GO:0003700; GO:0004879; GO:0005634; GO:0006919; GO:0007431; GO:0008284; GO:0008285; GO:0010628; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0033574; GO:0043280; GO:0043491; GO:0043569; GO:0043621; GO:0045892; GO:0045893; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051781; GO:0060442; GO:0060664; GO:0060770; GO:0071383; GO:0071899; GO:2000836; GO:2001022; GO:2001244; 
#=GS Q3UVH8/86-186       AC Q3UVH8
#=GS Q3UVH8/86-186       OS Mus musculus
#=GS Q3UVH8/86-186       DE NK-3 transcription factor, locus 1 (Drosophila)
#=GS Q3UVH8/86-186       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS F6VMK5/229-327      AC F6VMK5
#=GS F6VMK5/229-327      OS Equus caballus
#=GS F6VMK5/229-327      DE NK3 homeobox 1
#=GS F6VMK5/229-327      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS F6VMK5/229-327      DR GO; GO:0000976; GO:0000978; GO:0001934; GO:0003700; GO:0004879; GO:0005634; GO:0006919; GO:0007431; GO:0008284; GO:0008285; GO:0010628; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0033574; GO:0043280; GO:0043491; GO:0043569; GO:0043621; GO:0045892; GO:0045893; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051781; GO:0060442; GO:0060664; GO:0060770; GO:0071383; GO:0071899; GO:2000836; GO:2001022; GO:2001244; 
#=GS E1B732/94-189       AC E1B732
#=GS E1B732/94-189       OS Bos taurus
#=GS E1B732/94-189       DE NK3 homeobox 1
#=GS E1B732/94-189       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS E1B732/94-189       DR GO; GO:0000976; GO:0000978; GO:0001934; GO:0003700; GO:0004879; GO:0005634; GO:0006919; GO:0007431; GO:0008284; GO:0008285; GO:0010628; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0033574; GO:0043280; GO:0043491; GO:0043569; GO:0043621; GO:0045892; GO:0045893; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051781; GO:0060442; GO:0060664; GO:0060770; GO:0071383; GO:0071899; GO:2000836; GO:2001022; GO:2001244; 
#=GS A0A2U3W2Q9/26-109   AC A0A2U3W2Q9
#=GS A0A2U3W2Q9/26-109   OS Odobenus rosmarus divergens
#=GS A0A2U3W2Q9/26-109   DE homeobox protein Nkx-3.1 isoform X2
#=GS A0A2U3W2Q9/26-109   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Odobenidae; Odobenus; Odobenus rosmarus; Odobenus rosmarus divergens; 
#=GS S7P8Z4/92-173       AC S7P8Z4
#=GS S7P8Z4/92-173       OS Myotis brandtii
#=GS S7P8Z4/92-173       DE Homeobox protein Nkx-3.1
#=GS S7P8Z4/92-173       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis; Myotis brandtii; 
#=GS F6ZYW8/84-174       AC F6ZYW8
#=GS F6ZYW8/84-174       OS Callithrix jacchus
#=GS F6ZYW8/84-174       DE Uncharacterized protein
#=GS F6ZYW8/84-174       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus; 
#=GS F6ZYW8/84-174       DR GO; GO:0000976; GO:0000978; GO:0001934; GO:0003700; GO:0004879; GO:0005634; GO:0006919; GO:0007431; GO:0008284; GO:0008285; GO:0010628; GO:0010942; GO:0014068; GO:0030284; GO:0030331; GO:0030521; GO:0033574; GO:0043280; GO:0043491; GO:0043569; GO:0043621; GO:0045892; GO:0045893; GO:0045931; GO:0045944; GO:0048754; GO:0050680; GO:0051781; GO:0060442; GO:0060664; GO:0060770; GO:0071383; GO:0071899; GO:2000836; GO:2001022; GO:2001244; 
#=GS W5PK28/104-196      AC W5PK28
#=GS W5PK28/104-196      OS Ovis aries
#=GS W5PK28/104-196      DE Uncharacterized protein
#=GS W5PK28/104-196      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A2K5F381/14-104   AC A0A2K5F381
#=GS A0A2K5F381/14-104   OS Aotus nancymaae
#=GS A0A2K5F381/14-104   DE Uncharacterized protein
#=GS A0A2K5F381/14-104   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Aotidae; Aotus; Aotus nancymaae; 
#=GS A0A2I3HD46/19-110   AC A0A2I3HD46
#=GS A0A2I3HD46/19-110   OS Nomascus leucogenys
#=GS A0A2I3HD46/19-110   DE Uncharacterized protein
#=GS A0A2I3HD46/19-110   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS A0A2K6UDI7/21-104   AC A0A2K6UDI7
#=GS A0A2K6UDI7/21-104   OS Saimiri boliviensis boliviensis
#=GS A0A2K6UDI7/21-104   DE NK3 homeobox 1
#=GS A0A2K6UDI7/21-104   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Saimiriinae; Saimiri; Saimiri boliviensis; Saimiri boliviensis boliviensis; 
#=GS H2PPU3/104-186      AC H2PPU3
#=GS H2PPU3/104-186      OS Pongo abelii
#=GS H2PPU3/104-186      DE NKX3-1 isoform 1
#=GS H2PPU3/104-186      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A2I2Z174/20-110   AC A0A2I2Z174
#=GS A0A2I2Z174/20-110   OS Gorilla gorilla gorilla
#=GS A0A2I2Z174/20-110   DE NK3 homeobox 1
#=GS A0A2I2Z174/20-110   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS H2QVW6/30-109       AC H2QVW6
#=GS H2QVW6/30-109       OS Pan troglodytes
#=GS H2QVW6/30-109       DE NK3 homeobox 1
#=GS H2QVW6/30-109       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2R8ZZJ4/94-173   AC A0A2R8ZZJ4
#=GS A0A2R8ZZJ4/94-173   OS Pan paniscus
#=GS A0A2R8ZZJ4/94-173   DE Uncharacterized protein
#=GS A0A2R8ZZJ4/94-173   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan paniscus; 
#=GS K7B547/102-184      AC K7B547
#=GS K7B547/102-184      OS Pan troglodytes
#=GS K7B547/102-184      DE NK3 homeobox 1
#=GS K7B547/102-184      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2I3GI44/100-180  AC A0A2I3GI44
#=GS A0A2I3GI44/100-180  OS Nomascus leucogenys
#=GS A0A2I3GI44/100-180  DE Uncharacterized protein
#=GS A0A2I3GI44/100-180  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS A0A2I2YFJ4/105-184  AC A0A2I2YFJ4
#=GS A0A2I2YFJ4/105-184  OS Gorilla gorilla gorilla
#=GS A0A2I2YFJ4/105-184  DE NK3 homeobox 1
#=GS A0A2I2YFJ4/105-184  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GF SQ 20
P97436/86-186               -----------SPAETPTEPESDAHFETYLLDCEHNPGDLASAPQVTKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
Q99801/104-184              ------------------------------LDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
F7ENZ5/21-130               VHRERTGNRLHSCAHTHKPPHPDTHFETYLLNCENTPSAFPGLPQTQKQP-KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
Q3UVH8/86-186               -----------SPAETPTEPESDAHFETYLLDCEHNPGDLASAPQVTKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
F6VMK5/229-327              -------------AETPAETEPDRHLETYPSDCENTSGASRGLPQPSKQPQKRSRAAFSHTQVIELERKFSRQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
E1B732/94-189               -----------EEAEKPVETEP----ETYLLDCENPPSALQSLPPATKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2U3W2Q9/26-109           ---------------------------TYLMDCENSAGSLPSLPQTSKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
S7P8Z4/92-173               -----------------------------LLDCENTSGTSPSLPQAPKQPQKRSRAAFSHSQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
F6ZYW8/84-174               ---------------------ADRHLGSYLLDCENTSGALPSLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
W5PK28/104-196              ------------------ETEPDGHLETYLLDCENPPSALQSLPPATKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2K5F381/14-104           ---------------------PDRHLGSYLLDCENTSGALPSLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
A0A2I3HD46/19-110           --------------------EPERHLGSYLLDCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
A0A2K6UDI7/21-104           ----------------------------CLLDCEKTSGALPSLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
H2PPU3/104-186              ----------------------------YLLDCENTSGALPRLPQTTKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2I2Z174/20-110           ---------------------PERHLGSYLLDCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS
H2QVW6/30-109               -------------------------------DCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2R8ZZJ4/94-173           -------------------------------DCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
K7B547/102-184              ----------------------------YLSDCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2I3GI44/100-180          ------------------------------LDCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
A0A2I2YFJ4/105-184          -------------------------------DCENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL-
#=GC scorecons              0000000000000100000012112122445889766766547975599979999999998999999999989999999999999999999999999999999999999991
#=GC scorecons_70           _______________________________****__***__***__****************************************************************_
#=GC scorecons_80           _______________________________****_______***__****************************************************************_
#=GC scorecons_90           _______________________________***_________*___***_************************************************************_
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