# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000424
#=GF DE ANTP homeobox protein
#=GF AC 1.10.10.60/FF/000424
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 69.780
#=GS Q18273/96-179       AC Q18273
#=GS Q18273/96-179       OS Caenorhabditis elegans
#=GS Q18273/96-179       DE Homeobox protein ceh-43
#=GS Q18273/96-179       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q18273/96-179       DR GO; GO:0003700; GO:0007155; GO:0009792; 
#=GS B3SCK2/145-222      AC B3SCK2
#=GS B3SCK2/145-222      OS Trichoplax adhaerens
#=GS B3SCK2/145-222      DE Uncharacterized protein
#=GS B3SCK2/145-222      DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS Q27W45/145-222      AC Q27W45
#=GS Q27W45/145-222      OS Trichoplax adhaerens
#=GS Q27W45/145-222      DE ANTP homeobox protein
#=GS Q27W45/145-222      DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS T1EIS2/1-57         AC T1EIS2
#=GS T1EIS2/1-57         OS Helobdella robusta
#=GS T1EIS2/1-57         DE Uncharacterized protein
#=GS T1EIS2/1-57         DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS F7BDJ0/310-384      AC F7BDJ0
#=GS F7BDJ0/310-384      OS Ciona intestinalis
#=GS F7BDJ0/310-384      DE Uncharacterized protein
#=GS F7BDJ0/310-384      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A369S1N1/145-222  AC A0A369S1N1
#=GS A0A369S1N1/145-222  OS Trichoplax sp. H2
#=GS A0A369S1N1/145-222  DE Homeobox protein DLL-1
#=GS A0A369S1N1/145-222  DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; 
#=GS H2Z671/224-297      AC H2Z671
#=GS H2Z671/224-297      OS Ciona savignyi
#=GS H2Z671/224-297      DE Uncharacterized protein
#=GS H2Z671/224-297      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GS K7H7G1/97-181       AC K7H7G1
#=GS K7H7G1/97-181       OS Caenorhabditis japonica
#=GS K7H7G1/97-181       DE Uncharacterized protein
#=GS K7H7G1/97-181       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0ME61/85-158       AC G0ME61
#=GS G0ME61/85-158       OS Caenorhabditis brenneri
#=GS G0ME61/85-158       DE CBN-CEH-43 protein
#=GS G0ME61/85-158       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A261BLX5/90-163   AC A0A261BLX5
#=GS A0A261BLX5/90-163   OS Caenorhabditis latens
#=GS A0A261BLX5/90-163   DE Uncharacterized protein
#=GS A0A261BLX5/90-163   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A8XSY1/86-159       AC A8XSY1
#=GS A8XSY1/86-159       OS Caenorhabditis briggsae
#=GS A8XSY1/86-159       DE Protein CBR-CEH-43
#=GS A8XSY1/86-159       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5UEA1/101-174  AC A0A2G5UEA1
#=GS A0A2G5UEA1/101-174  OS Caenorhabditis nigoni
#=GS A0A2G5UEA1/101-174  DE Uncharacterized protein
#=GS A0A2G5UEA1/101-174  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS E3MCZ2/90-163       AC E3MCZ2
#=GS E3MCZ2/90-163       OS Caenorhabditis remanei
#=GS E3MCZ2/90-163       DE CRE-CEH-43 protein
#=GS E3MCZ2/90-163       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS F7AN00/107-181      AC F7AN00
#=GS F7AN00/107-181      OS Ciona intestinalis
#=GS F7AN00/107-181      DE Uncharacterized protein
#=GS F7AN00/107-181      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS Q4H3Q0/310-384      AC Q4H3Q0
#=GS Q4H3Q0/310-384      OS Ciona intestinalis
#=GS Q4H3Q0/310-384      DE Transcription factor protein
#=GS Q4H3Q0/310-384      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS Q9GP88/6-80         AC Q9GP88
#=GS Q9GP88/6-80         OS Ciona intestinalis
#=GS Q9GP88/6-80         DE Distal-less
#=GS Q9GP88/6-80         DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS K7H7G0/114-198      AC K7H7G0
#=GS K7H7G0/114-198      OS Caenorhabditis japonica
#=GS K7H7G0/114-198      DE Uncharacterized protein
#=GS K7H7G0/114-198      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A2G5UEE7/91-164   AC A0A2G5UEE7
#=GS A0A2G5UEE7/91-164   OS Caenorhabditis nigoni
#=GS A0A2G5UEE7/91-164   DE Uncharacterized protein
#=GS A0A2G5UEE7/91-164   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS F7BDW7/225-297      AC F7BDW7
#=GS F7BDW7/225-297      OS Ciona intestinalis
#=GS F7BDW7/225-297      DE Uncharacterized protein
#=GS F7BDW7/225-297      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS Q9GP89/225-298      AC Q9GP89
#=GS Q9GP89/225-298      OS Ciona intestinalis
#=GS Q9GP89/225-298      DE Distal-less
#=GS Q9GP89/225-298      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS Q4H3Q1/225-295      AC Q4H3Q1
#=GS Q4H3Q1/225-295      OS Ciona intestinalis
#=GS Q4H3Q1/225-295      DE Transcription factor protein
#=GS Q4H3Q1/225-295      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GF SQ 21
Q18273/96-179               -----------NVKGKKMRKPRTIYNSSQLQMLQKKFQKTQYLALPDRAALAHELGLSQTQVKIWFQNRRSKQKKQKGGSSDHASDEEDDDTEES--
B3SCK2/145-222              SQEKTGNHKPRNNKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSKLKKSTG-------------------
Q27W45/145-222              SQEKTGNHKPRSNKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSKLKKSTG-------------------
T1EIS2/1-57                 ------------------RKPRTIYTTTQLQELTRRYKISAYLALPDRADLAQQLGLSQTQIKIWFQNRRSKSKK----------------------
F7BDJ0/310-384              --TEQPNTSVNTSKSKKKRNPRTVYSNYQLQELHMYFKKVQYLALPERARLAAALGLTQTQVKVWFQNRRSKIKKLL--------------------
A0A369S1N1/145-222          SQEKTGNHKPRNNKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSKLKKSTG-------------------
H2Z671/224-297              --SAQNGDAGGRVKGKKARKPRTIYTSYQLQQLVRRFQRTQYLALPERAELAASLGVTQTQIKIWFQNRRSKYKKL---------------------
K7H7G1/97-181               -----------NVKGKKMRKPRTIYNSQQLQLLQKRFQKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKQKTGTSDHASD-EDNDTEESKP
G0ME61/85-158               -----GCEAKYNTKGKKMRKPRTIYNTQQLQMLQKKFEKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKAKSG------------------
A0A261BLX5/90-163           -----GCEAKYNTKGKKMRKPRTIYNTQQLAQLQKKFDKTQYLALPDRAALAAELGLTQTQVKIWFQNRRSKQKKQKTP------------------
A8XSY1/86-159               -----GCEAKYNQKGKKMRKPRTIYNTAQLQMLQKKFDKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKSKGG------------------
A0A2G5UEA1/101-174          -----GCEAKYNQKGKKMRKPRTIYNTAQLQMLQKKFDKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKSKGG------------------
E3MCZ2/90-163               -----GCEAKYNTKGKKMRKPRTIYNTQQLAQLQKKFDKTQYLALPDRAALAAELGLTQTQVKIWFQNRRSKQKKQKTP------------------
F7AN00/107-181              --TEQPNTSVNTSKSKKKRNPRTVYSNYQLQELHMYFKKVQYLALPERARLAAALGLTQTQVKVWFQNRRSKIKKLL--------------------
Q4H3Q0/310-384              --TEQPNTSVNTSKSKKKRNPRTVYSNYQLQELHMYFKKVQYLALPERARLAAALGLTQTQVKVWFQNRRSKIKKLL--------------------
Q9GP88/6-80                 --TEQPNTSVNTSKSKKKRNPRTVYSNYQLQELHMYFKKVQYLALPERARLAAALGLTQTQVKVWFQNRRSKIKKLL--------------------
K7H7G0/114-198              -----------NVKGKKMRKPRTIYNSQQLQLLQKRFQKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKQKTGTSDHASD-EDNDTEESKP
A0A2G5UEE7/91-164           -----GCEAKYNQKGKKMRKPRTIYNTAQLQMLQKKFDKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKSKGG------------------
F7BDW7/225-297              --SVQNGD-GGRVKGKKTRKPRTIYTSYQLQQLVRRFQRTQYLALPERAELAASLGVTQTQIKIWFQNRRSKYKKL---------------------
Q9GP89/225-298              --SVQNGD-GGRVKGKKTRKPRTIYTSYQLQQLVRRFQRTQYLALPERAELAASLGVTQTQIKIWFQNRRSNYKKLL--------------------
Q4H3Q1/225-295              --SVQNGD-GGRVKGKKTRKPRTIYTSYQLQQLVRRFQRTQYLALPERAELAASLGVTQTQIKIWFQNRRSKYN-----------------------
#=GC scorecons              0010122211243767739799978553996494458455799799799499749976999797999999983883211000000000000000000
#=GC scorecons_70           _____________*_**_*******___***_*___*___*********_***_***_**************_**______________________
#=GC scorecons_80           _____________*_**_*******___**__*___*____*****_**_***_***_**************_**______________________
#=GC scorecons_90           __________________*_***_*___**__*___*____**_**_**_**__**__***_*_********_**______________________
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