# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000419
#=GF DE Homeobox protein Hox-D4
#=GF AC 1.10.10.60/FF/000419
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 37.895
#=GS F6U9K5/122-206      AC F6U9K5
#=GS F6U9K5/122-206      OS Monodelphis domestica
#=GS F6U9K5/122-206      DE Uncharacterized protein
#=GS F6U9K5/122-206      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS A0A3Q1EBT1/1-70     AC A0A3Q1EBT1
#=GS A0A3Q1EBT1/1-70     OS Acanthochromis polyacanthus
#=GS A0A3Q1EBT1/1-70     DE Uncharacterized protein
#=GS A0A3Q1EBT1/1-70     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Pomacentridae; Acanthochromis; Acanthochromis polyacanthus; 
#=GS G1NDZ7/12-84        AC G1NDZ7
#=GS G1NDZ7/12-84        OS Meleagris gallopavo
#=GS G1NDZ7/12-84        DE Homeobox A4
#=GS G1NDZ7/12-84        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris; Meleagris gallopavo; 
#=GS A0A2K6TK48/6-78     AC A0A2K6TK48
#=GS A0A2K6TK48/6-78     OS Saimiri boliviensis boliviensis
#=GS A0A2K6TK48/6-78     DE Uncharacterized protein
#=GS A0A2K6TK48/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Saimiriinae; Saimiri; Saimiri boliviensis; Saimiri boliviensis boliviensis; 
#=GS W5Q7S1/155-227      AC W5Q7S1
#=GS W5Q7S1/155-227      OS Ovis aries
#=GS W5Q7S1/155-227      DE Homeobox protein Hox-D4
#=GS W5Q7S1/155-227      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A3Q7S208/135-207  AC A0A3Q7S208
#=GS A0A3Q7S208/135-207  OS Vulpes vulpes
#=GS A0A3Q7S208/135-207  DE homeobox protein Hox-D4
#=GS A0A3Q7S208/135-207  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes; Vulpes vulpes; 
#=GS G5BD52/34-106       AC G5BD52
#=GS G5BD52/34-106       OS Heterocephalus glaber
#=GS G5BD52/34-106       DE Homeobox protein Hox-A4
#=GS G5BD52/34-106       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus; Heterocephalus glaber; 
#=GS A0A3Q4AQH9/1-70     AC A0A3Q4AQH9
#=GS A0A3Q4AQH9/1-70     OS Mola mola
#=GS A0A3Q4AQH9/1-70     DE Uncharacterized protein
#=GS A0A3Q4AQH9/1-70     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Tetraodontiformes; Moloidei; Molidae; Mola; Mola mola; 
#=GS A0A3B4F9N6/1-70     AC A0A3B4F9N6
#=GS A0A3B4F9N6/1-70     OS Pundamilia nyererei
#=GS A0A3B4F9N6/1-70     DE Uncharacterized protein
#=GS A0A3B4F9N6/1-70     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Cichlomorphae; Cichliformes; Cichlidae; Pseudocrenilabrinae; Haplochromini; Pundamilia; Pundamilia nyererei; 
#=GS A0A3Q3KX80/1-70     AC A0A3Q3KX80
#=GS A0A3Q3KX80/1-70     OS Mastacembelus armatus
#=GS A0A3Q3KX80/1-70     DE Uncharacterized protein
#=GS A0A3Q3KX80/1-70     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Synbranchiformes; Mastacembeloidei; Mastacembelidae; Mastacembelus; Mastacembelus armatus; 
#=GS A0A452T254/4-73     AC A0A452T254
#=GS A0A452T254/4-73     OS Ursus maritimus
#=GS A0A452T254/4-73     DE Uncharacterized protein
#=GS A0A452T254/4-73     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus; Ursus maritimus; 
#=GS A0A3Q3BBF0/1-70     AC A0A3Q3BBF0
#=GS A0A3Q3BBF0/1-70     OS Kryptolebias marmoratus
#=GS A0A3Q3BBF0/1-70     DE Uncharacterized protein
#=GS A0A3Q3BBF0/1-70     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Atherinomorphae; Cyprinodontiformes; Aplocheiloidei; Rivulidae; Kryptolebias; Kryptolebias marmoratus; 
#=GS A0A2K6QNA9/6-78     AC A0A2K6QNA9
#=GS A0A2K6QNA9/6-78     OS Rhinopithecus roxellana
#=GS A0A2K6QNA9/6-78     DE Uncharacterized protein
#=GS A0A2K6QNA9/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus roxellana; 
#=GS E2RGY0/139-211      AC E2RGY0
#=GS E2RGY0/139-211      OS Canis lupus familiaris
#=GS E2RGY0/139-211      DE Uncharacterized protein
#=GS E2RGY0/139-211      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS A0A452FAU2/6-78     AC A0A452FAU2
#=GS A0A452FAU2/6-78     OS Capra hircus
#=GS A0A452FAU2/6-78     DE Uncharacterized protein
#=GS A0A452FAU2/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Capra; Capra hircus; 
#=GS A0A2K5EW69/6-78     AC A0A2K5EW69
#=GS A0A2K5EW69/6-78     OS Aotus nancymaae
#=GS A0A2K5EW69/6-78     DE Uncharacterized protein
#=GS A0A2K5EW69/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Aotidae; Aotus; Aotus nancymaae; 
#=GS G1RY91/178-249      AC G1RY91
#=GS G1RY91/178-249      OS Nomascus leucogenys
#=GS G1RY91/178-249      DE Uncharacterized protein
#=GS G1RY91/178-249      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS A0A2K5TKJ4/6-78     AC A0A2K5TKJ4
#=GS A0A2K5TKJ4/6-78     OS Macaca fascicularis
#=GS A0A2K5TKJ4/6-78     DE Uncharacterized protein
#=GS A0A2K5TKJ4/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS Q533X2/1-70         AC Q533X2
#=GS Q533X2/1-70         OS Oreochromis niloticus
#=GS Q533X2/1-70         DE Hox protein
#=GS Q533X2/1-70         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Cichlomorphae; Cichliformes; Cichlidae; Pseudocrenilabrinae; Oreochromini; Oreochromis; Oreochromis niloticus; 
#=GS A0A1D5R0C4/6-78     AC A0A1D5R0C4
#=GS A0A1D5R0C4/6-78     OS Macaca mulatta
#=GS A0A1D5R0C4/6-78     DE Uncharacterized protein
#=GS A0A1D5R0C4/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A2K6MIT5/6-78     AC A0A2K6MIT5
#=GS A0A2K6MIT5/6-78     OS Rhinopithecus bieti
#=GS A0A2K6MIT5/6-78     DE Uncharacterized protein
#=GS A0A2K6MIT5/6-78     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus bieti; 
#=GF SQ 21
F6U9K5/122-206              GKEPVVYPWMKKIHVSTVNP---NYNGGEPKRSRTAYTRQQVWS-EKEFHFNRYLTXXXXIEIAHTLCLSERQVKIWF-NRRMKWKKDHK
A0A3Q1EBT1/1-70             -----------------MSS---NYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
G1NDZ7/12-84                --------------ARSVNP---NYSGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A2K6TK48/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
W5Q7S1/155-227              --------------CLSVNP---NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A3Q7S208/135-207          --------------CLAVNP---NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK
G5BD52/34-106               --------------GRSVNP---SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A3Q4AQH9/1-70             -----------------VSS---NYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A3B4F9N6/1-70             -----------------VSS---NYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A3Q3KX80/1-70             -----------------MSS---NYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A452T254/4-73             ---------------FSVAD-----NIGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A3Q3BBF0/1-70             -----------------MNS---SYSGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A2K6QNA9/6-78             -----------------INSNYIEPRRREPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
E2RGY0/139-211              --------------CLAVNP---NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A452FAU2/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A2K5EW69/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
G1RY91/178-249              ---------------LLVNP---SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A2K5TKJ4/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
Q533X2/1-70                 -----------------VSS---NYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHK
A0A1D5R0C4/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
A0A2K6MIT5/6-78             -----------------INSNYIDYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK
#=GC scorecons              000000000000000006650004757899999999999999776999997999996666799999999999979999699999999999
#=GC scorecons_70           _________________**_____*_****************************************************************
#=GC scorecons_80           __________________________****************_*_***********____******************_***********
#=GC scorecons_90           ___________________________***************___*****_*****_____************_****_***********
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