# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000398
#=GF DE Homeobox protein lin-39
#=GF AC 1.10.10.60/FF/000398
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 63.115
#=GS P10038/98-177       AC P10038
#=GS P10038/98-177       OS Caenorhabditis elegans
#=GS P10038/98-177       DE Homeobox protein mab-5
#=GS P10038/98-177       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P10038/98-177       DR GO; GO:0000122; GO:0005634; GO:0009952; GO:0030334; GO:0042659; GO:0045138; GO:0045944; GO:0048337; GO:0050679; GO:0051179; GO:0090575; GO:0097402; 
#=GS P34684/143-225      AC P34684
#=GS P34684/143-225      OS Caenorhabditis elegans
#=GS P34684/143-225      DE Homeobox protein lin-39
#=GS P34684/143-225      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P34684/143-225      DR GO; GO:0001158; GO:0005634; GO:0009952; GO:0040026; GO:0042659; GO:0043565; GO:0045893; GO:0048337; GO:0051302; 
#=GS A0A0K0JWE8/85-168   AC A0A0K0JWE8
#=GS A0A0K0JWE8/85-168   OS Brugia malayi
#=GS A0A0K0JWE8/85-168   DE Uncharacterized protein
#=GS A0A0K0JWE8/85-168   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Brugia; Brugia malayi; 
#=GS F5HK01/248-328      AC F5HK01
#=GS F5HK01/248-328      OS Anopheles gambiae
#=GS F5HK01/248-328      DE AGAP013157-PA
#=GS F5HK01/248-328      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS A0A016UUB2/89-172   AC A0A016UUB2
#=GS A0A016UUB2/89-172   OS Ancylostoma ceylanicum
#=GS A0A016UUB2/89-172   DE Uncharacterized protein
#=GS A0A016UUB2/89-172   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS W6NH76/28-111       AC W6NH76
#=GS W6NH76/28-111       OS Haemonchus contortus
#=GS W6NH76/28-111       DE Homeobox domain containing protein
#=GS W6NH76/28-111       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchus; Haemonchus contortus; 
#=GS A0A1I7Y6E2/24-107   AC A0A1I7Y6E2
#=GS A0A1I7Y6E2/24-107   OS Steinernema glaseri
#=GS A0A1I7Y6E2/24-107   DE Uncharacterized protein
#=GS A0A1I7Y6E2/24-107   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Steinernematidae; Steinernema; Steinernema glaseri; 
#=GS F1L965/90-172       AC F1L965
#=GS F1L965/90-172       OS Ascaris suum
#=GS F1L965/90-172       DE Homeobox protein lin-39
#=GS F1L965/90-172       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Ascaridomorpha; Ascaridoidea; Ascarididae; Ascaris; Ascaris suum; 
#=GS A0A2G9UFA3/71-154   AC A0A2G9UFA3
#=GS A0A2G9UFA3/71-154   OS Teladorsagia circumcincta
#=GS A0A2G9UFA3/71-154   DE Homeobox domain protein
#=GS A0A2G9UFA3/71-154   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Haemonchidae; Teladorsagia; Teladorsagia circumcincta; 
#=GS A0A044UVD5/91-174   AC A0A044UVD5
#=GS A0A044UVD5/91-174   OS Onchocerca volvulus
#=GS A0A044UVD5/91-174   DE Uncharacterized protein
#=GS A0A044UVD5/91-174   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Onchocerca; Onchocerca volvulus; 
#=GS Q9GZ04/145-225      AC Q9GZ04
#=GS Q9GZ04/145-225      OS Caenorhabditis briggsae
#=GS Q9GZ04/145-225      DE LIN-39
#=GS Q9GZ04/145-225      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2H2IKM4/131-213  AC A0A2H2IKM4
#=GS A0A2H2IKM4/131-213  OS Caenorhabditis japonica
#=GS A0A2H2IKM4/131-213  DE Uncharacterized protein
#=GS A0A2H2IKM4/131-213  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0MG14/142-224      AC G0MG14
#=GS G0MG14/142-224      OS Caenorhabditis brenneri
#=GS G0MG14/142-224      DE CBN-LIN-39 protein
#=GS G0MG14/142-224      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS E3MWF9/146-228      AC E3MWF9
#=GS E3MWF9/146-228      OS Caenorhabditis remanei
#=GS E3MWF9/146-228      DE CRE-LIN-39 protein
#=GS E3MWF9/146-228      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS B6VBT6/99-182       AC B6VBT6
#=GS B6VBT6/99-182       OS Caenorhabditis angaria
#=GS B6VBT6/99-182       DE Uncharacterized protein
#=GS B6VBT6/99-182       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis angaria; 
#=GS A0A016UV50/106-189  AC A0A016UV50
#=GS A0A016UV50/106-189  OS Ancylostoma ceylanicum
#=GS A0A016UV50/106-189  DE Uncharacterized protein
#=GS A0A016UV50/106-189  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS G0MGJ1/96-175       AC G0MGJ1
#=GS G0MGJ1/96-175       OS Caenorhabditis brenneri
#=GS G0MGJ1/96-175       DE Uncharacterized protein
#=GS G0MGJ1/96-175       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS E3MKT9/97-176       AC E3MKT9
#=GS E3MKT9/97-176       OS Caenorhabditis remanei
#=GS E3MKT9/97-176       DE CRE-MAB-5 protein
#=GS E3MKT9/97-176       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS K7H8X8/99-178       AC K7H8X8
#=GS K7H8X8/99-178       OS Caenorhabditis japonica
#=GS K7H8X8/99-178       DE Uncharacterized protein
#=GS K7H8X8/99-178       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS K7H8X7/101-180      AC K7H8X7
#=GS K7H8X7/101-180      OS Caenorhabditis japonica
#=GS K7H8X7/101-180      DE Uncharacterized protein
#=GS K7H8X7/101-180      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS Q9GZ03/103-179      AC Q9GZ03
#=GS Q9GZ03/103-179      OS Caenorhabditis briggsae
#=GS Q9GZ03/103-179      DE MAB-5
#=GS Q9GZ03/103-179      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS B6VBW6/93-173       AC B6VBW6
#=GS B6VBW6/93-173       OS Caenorhabditis angaria
#=GS B6VBW6/93-173       DE Uncharacterized protein
#=GS B6VBW6/93-173       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis angaria; 
#=GS A8WM72/61-140       AC A8WM72
#=GS A8WM72/61-140       OS Caenorhabditis briggsae
#=GS A8WM72/61-140       DE Protein CBG00043
#=GS A8WM72/61-140       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GF SQ 23
P10038/98-177               -AISQPVFPWM-KMG--GAK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
P34684/143-225              -NSGGAVYPWMTRVH--STT----GGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
A0A0K0JWE8/85-168           EKNNVAVYPWMTRVH--SAS----GSNRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
F5HK01/248-328              -------PKNMESAI--SSQGVENHPKESSKRTRQSYSRHQTIELEKEFHFNRYLNRRRRIEIASMLKLTERQIKIWFQNRRMKAKKDNS
A0A016UUB2/89-172           --GVAAVYPWMTRVH--SSSG--EGGSRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
W6NH76/28-111               --GVAAVYPWMTRVH--SSSG--EGGSRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
A0A1I7Y6E2/24-107           KEANVALYPWMTRVH--SSS----GGSRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHALMLTERQVKIWFQNRRMKHKKENK
F1L965/90-172               -KAGVAVYPWMTRVH--STN----GSNRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
A0A2G9UFA3/71-154           --GVAAVYPWMTRVH--SSSG--EGGSRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
A0A044UVD5/91-174           EKNNVAVYPWMTRVH--SAS----GSNRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
Q9GZ04/145-225              ---GGAVYPWMTRVH--STT----GGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
A0A2H2IKM4/131-213          -ASGGAVYPWMTRVH--STT----GGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
G0MG14/142-224              -KSGGAVYPWMTRVH--STT----GGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
E3MWF9/146-228              -SSGGAVYPWMTRVH--STT----GGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
B6VBT6/99-182               KNSNAAVYPWMTRVH--STT----GGHRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK
A0A016UV50/106-189          --GVAAVYPWMTRVH--SSSG--EGGSRGEKRQRTAYTRNQVLELEKEFHFNKYLTRKRRIEIAHSLMLTERQVKIWFQNRRMKHKKENK
G0MGJ1/96-175               -AINQPVFPWM-KMG--GAK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
E3MKT9/97-176               -AISQPVFPWM-KMG--GAK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
K7H8X8/99-178               -AISQPVFPWM-KMG--GAK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
K7H8X7/101-180              -AISQPVFPWM-KMG--GAK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
Q9GZ03/103-179              ----QPVFPWM-KMG--GTK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
B6VBW6/93-173               --APQPVFPWM-KMGGSGTK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISESLHLTERQVKIWFQNRRMKHKKEAK
A8WM72/61-140               -GTGFGIFKIL-KFQ--STK----GGE--SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAK
#=GC scorecons              012234667682654006540000764225995956969595899999995689989899597655949999989999999999799867
#=GC scorecons_70           ______*****_*____*______**____**_*__*_*_*_********_*********_***__*_********************_*
#=GC scorecons_80           __________*_____________*_____**_*__*_*_*_********__********_**___*_********************_*
#=GC scorecons_90           __________*___________________**_*__*_*_*_********__***_****_*____*_****************_***__
//