# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000391
#=GF DE Homeobox transcription factor
#=GF AC 1.10.10.60/FF/000391
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 77.847
#=GS G5EGF2/5-81         AC G5EGF2
#=GS G5EGF2/5-81         OS Caenorhabditis elegans
#=GS G5EGF2/5-81         DE COG-1B
#=GS G5EGF2/5-81         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EGF2/5-81         DR GO; GO:0003388; GO:0007368; GO:0007389; GO:0008406; GO:0010628; GO:0010629; GO:0018991; GO:0070491; 
#=GS Q06AD1/113-167      AC Q06AD1
#=GS Q06AD1/113-167      OS Danio rerio
#=GS Q06AD1/113-167      DE Homeobox transcription factor
#=GS Q06AD1/113-167      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q06AD1/113-167      DR GO; GO:0003309; GO:0003310; GO:0021522; GO:0031018; 
#=GS G5EGE2/155-231      AC G5EGE2
#=GS G5EGE2/155-231      OS Caenorhabditis elegans
#=GS G5EGE2/155-231      DE COG-1A
#=GS G5EGE2/155-231      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EGE2/155-231      DR GO; GO:0003388; GO:0007368; GO:0007389; GO:0008406; GO:0010628; GO:0010629; GO:0018991; GO:0070491; 
#=GS Q5TTR1/549-614      AC Q5TTR1
#=GS Q5TTR1/549-614      OS Anopheles gambiae
#=GS Q5TTR1/549-614      DE AGAP002431-PA
#=GS Q5TTR1/549-614      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS T1G6J9/61-129       AC T1G6J9
#=GS T1G6J9/61-129       OS Helobdella robusta
#=GS T1G6J9/61-129       DE Uncharacterized protein
#=GS T1G6J9/61-129       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS B7QLW6/42-101       AC B7QLW6
#=GS B7QLW6/42-101       OS Ixodes scapularis
#=GS B7QLW6/42-101       DE Nk-6 homeobox protein, putative
#=GS B7QLW6/42-101       DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS F6VY29/9-77         AC F6VY29
#=GS F6VY29/9-77         OS Ornithorhynchus anatinus
#=GS F6VY29/9-77         DE Uncharacterized protein
#=GS F6VY29/9-77         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS A0A1L8FJ20/207-259  AC A0A1L8FJ20
#=GS A0A1L8FJ20/207-259  OS Xenopus laevis
#=GS A0A1L8FJ20/207-259  DE Uncharacterized protein
#=GS A0A1L8FJ20/207-259  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis; 
#=GS H3E4U4/76-144       AC H3E4U4
#=GS H3E4U4/76-144       OS Pristionchus pacificus
#=GS H3E4U4/76-144       DE Uncharacterized protein
#=GS H3E4U4/76-144       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS F6SKM8/129-191      AC F6SKM8
#=GS F6SKM8/129-191      OS Equus caballus
#=GS F6SKM8/129-191      DE NK6 homeobox 3
#=GS F6SKM8/129-191      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS T0NM82/127-192      AC T0NM82
#=GS T0NM82/127-192      OS Camelus ferus
#=GS T0NM82/127-192      DE Homeobox protein Nkx-6.3
#=GS T0NM82/127-192      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Tylopoda; Camelidae; Camelus; Camelus ferus; 
#=GS A8XYV4/161-237      AC A8XYV4
#=GS A8XYV4/161-237      OS Caenorhabditis briggsae
#=GS A8XYV4/161-237      DE Protein CBR-COG-1
#=GS A8XYV4/161-237      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0MZC3/166-240      AC G0MZC3
#=GS G0MZC3/166-240      OS Caenorhabditis brenneri
#=GS G0MZC3/166-240      DE Uncharacterized protein
#=GS G0MZC3/166-240      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS E3LRI9/161-237      AC E3LRI9
#=GS E3LRI9/161-237      OS Caenorhabditis remanei
#=GS E3LRI9/161-237      DE CRE-COG-1 protein
#=GS E3LRI9/161-237      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261BZV0/161-237  AC A0A261BZV0
#=GS A0A261BZV0/161-237  OS Caenorhabditis latens
#=GS A0A261BZV0/161-237  DE Uncharacterized protein
#=GS A0A261BZV0/161-237  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2H2I6C3/181-256  AC A0A2H2I6C3
#=GS A0A2H2I6C3/181-256  OS Caenorhabditis japonica
#=GS A0A2H2I6C3/181-256  DE Uncharacterized protein
#=GS A0A2H2I6C3/181-256  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A1I7UA32/166-240  AC A0A1I7UA32
#=GS A0A1I7UA32/166-240  OS Caenorhabditis tropicalis
#=GS A0A1I7UA32/166-240  DE Uncharacterized protein
#=GS A0A1I7UA32/166-240  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5V6W1/33-110   AC A0A2G5V6W1
#=GS A0A2G5V6W1/33-110   OS Caenorhabditis nigoni
#=GS A0A2G5V6W1/33-110   DE Uncharacterized protein
#=GS A0A2G5V6W1/33-110   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS Q17DV0/429-492      AC Q17DV0
#=GS Q17DV0/429-492      OS Aedes aegypti
#=GS Q17DV0/429-492      DE AAEL004033-PA
#=GS Q17DV0/429-492      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia; Aedes aegypti; 
#=GS A0A182XX05/6-72     AC A0A182XX05
#=GS A0A182XX05/6-72     OS Anopheles stephensi
#=GS A0A182XX05/6-72     DE Uncharacterized protein
#=GS A0A182XX05/6-72     DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles stephensi; 
#=GS A0A182HT38/7-73     AC A0A182HT38
#=GS A0A182HT38/7-73     OS Anopheles arabiensis
#=GS A0A182HT38/7-73     DE Uncharacterized protein
#=GS A0A182HT38/7-73     DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles arabiensis; 
#=GS A0A182P732/16-79    AC A0A182P732
#=GS A0A182P732/16-79    OS Anopheles epiroticus
#=GS A0A182P732/16-79    DE Uncharacterized protein
#=GS A0A182P732/16-79    DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles epiroticus; 
#=GS A0A182Q9M4/14-78    AC A0A182Q9M4
#=GS A0A182Q9M4/14-78    OS Anopheles farauti
#=GS A0A182Q9M4/14-78    DE Uncharacterized protein
#=GS A0A182Q9M4/14-78    DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles farauti; 
#=GS G0PG89/166-240      AC G0PG89
#=GS G0PG89/166-240      OS Caenorhabditis brenneri
#=GS G0PG89/166-240      DE CBN-COG-1 protein
#=GS G0PG89/166-240      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS F7ELD5/101-167      AC F7ELD5
#=GS F7ELD5/101-167      OS Ornithorhynchus anatinus
#=GS F7ELD5/101-167      DE Uncharacterized protein
#=GS F7ELD5/101-167      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GF SQ 25
G5EGF2/5-81                 ---QHSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
Q06AD1/113-167              -----QANMMLDKD-GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQ-------------------
G5EGE2/155-231              ---QHSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
Q5TTR1/549-614              -ASLSQSHHAQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVGFSA------------
T1G6J9/61-129               ----------SSSF-KRFNCSRPTFTGNQIFALEKVFEQTKYLAGNERTNLALSLGMSENQVKIWFQNRRTKWRKKSQPD
B7QLW6/42-101               ---------CLDKD-GKKKHTRPTFSGHQIYVLEKTFEQTKYLAGPERAKLAYALGMSERIQSGPLRRET----------
F6VY29/9-77                 ----HQGSILLDKD-GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVRGRVTRG--REK----
A0A1L8FJ20/207-259          ---------MLDKD-GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVK-----------------
H3E4U4/76-144               --SNSALRLSPNSM-IQKKQSRPTFTGHQIFMLEKKFEQTKYLAGSDRAQLANELNMSESQVKVF--------RTLSFPN
F6SKM8/129-191              ------PDPLSDSI-HKKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVSLCGSR----------
T0NM82/127-192              ----NTPDPLSDSV-HKKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVSLREKKV---------
A8XYV4/161-237              ---QHSMQLSPNSLSMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
G0MZC3/166-240              -----SMPLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRANLAQELNMSESQVKVWFQNRRTKWRKKEAAD
E3LRI9/161-237              ---QHSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
A0A261BZV0/161-237          ---QHSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
A0A2H2I6C3/181-256          ----HSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
A0A1I7UA32/166-240          -----SMPLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRANLAQELNMSESQVKVWFQNRRTKWRKKEAAD
A0A2G5V6W1/33-110           --LQHSMQLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAAD
Q17DV0/429-492              SASLSQSHHNQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVG---------------
A0A182XX05/6-72             SASLSQNHHAQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVGFLR------------
A0A182HT38/7-73             SASLSQSHHAQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVGFSA------------
A0A182P732/16-79            SASLSQSHHAQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKPE---------------
A0A182Q9M4/14-78            SASLSQSHHAQDKD-GKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKTMM--------------
G0PG89/166-240              -----SMPLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRANLAQELNMSESQVKVWFQNRRTKWRKKEAAD
F7ELD5/101-167              S---AQTGMVLDKD-GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVRGWICNR---------
#=GC scorecons              00012323334653046786699996969975997599999999957985995496969787752322221112111111
#=GC scorecons_70           ________________****_****_*****_***_*********_***_**__*_*_*****_________________
#=GC scorecons_80           _________________**__****_*_***_***_*********_***_**__*_*_*****_________________
#=GC scorecons_90           __________________*__****_*_**__**__*********__**_**__*_*_*_*___________________
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