# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000373
#=GF DE Blast:Brain-specific homeobox protein
#=GF AC 1.10.10.60/FF/000373
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 58.886
#=GS Q04787/268-348      AC Q04787
#=GS Q04787/268-348      OS Drosophila melanogaster
#=GS Q04787/268-348      DE Brain-specific homeobox protein
#=GS Q04787/268-348      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q04787/268-348      DR GO; GO:0003700; GO:0005634; GO:0006355; GO:0007420; GO:0048663; 
#=GS A0A1X7RC60/113-193  AC A0A1X7RC60
#=GS A0A1X7RC60/113-193  OS Caenorhabditis elegans
#=GS A0A1X7RC60/113-193  DE Uncharacterized protein
#=GS A0A1X7RC60/113-193  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q19937/117-196      AC Q19937
#=GS Q19937/117-196      OS Caenorhabditis elegans
#=GS Q19937/117-196      DE Uncharacterized protein
#=GS Q19937/117-196      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS T1EK77/1-63         AC T1EK77
#=GS T1EK77/1-63         OS Helobdella robusta
#=GS T1EK77/1-63         DE Uncharacterized protein
#=GS T1EK77/1-63         DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS T1EK90/1-63         AC T1EK90
#=GS T1EK90/1-63         OS Helobdella robusta
#=GS T1EK90/1-63         DE Uncharacterized protein
#=GS T1EK90/1-63         DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS Q7PVF1/255-325      AC Q7PVF1
#=GS Q7PVF1/255-325      OS Anopheles gambiae
#=GS Q7PVF1/255-325      DE AGAP009302-PA
#=GS Q7PVF1/255-325      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS F7BLR9/238-324      AC F7BLR9
#=GS F7BLR9/238-324      OS Ciona intestinalis
#=GS F7BLR9/238-324      DE Uncharacterized protein
#=GS F7BLR9/238-324      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS C3Y0U7/97-178       AC C3Y0U7
#=GS C3Y0U7/97-178       OS Branchiostoma floridae
#=GS C3Y0U7/97-178       DE Brain specific homeobox protein
#=GS C3Y0U7/97-178       DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS A0A1B0CMJ3/153-220  AC A0A1B0CMJ3
#=GS A0A1B0CMJ3/153-220  OS Lutzomyia longipalpis
#=GS A0A1B0CMJ3/153-220  DE Uncharacterized protein
#=GS A0A1B0CMJ3/153-220  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Psychodomorpha; Psychodoidea; Psychodidae; Phlebotominae; Lutzomyia; Lutzomyia; Lutzomyia longipalpis; 
#=GS A0A2G5UZU0/117-194  AC A0A2G5UZU0
#=GS A0A2G5UZU0/117-194  OS Caenorhabditis nigoni
#=GS A0A2G5UZU0/117-194  DE Uncharacterized protein
#=GS A0A2G5UZU0/117-194  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS E3LQU1/151-228      AC E3LQU1
#=GS E3LQU1/151-228      OS Caenorhabditis remanei
#=GS E3LQU1/151-228      DE CRE-TAB-1 protein
#=GS E3LQU1/151-228      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS G0NQX9/113-191      AC G0NQX9
#=GS G0NQX9/113-191      OS Caenorhabditis brenneri
#=GS G0NQX9/113-191      DE Uncharacterized protein
#=GS G0NQX9/113-191      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A261BPH2/169-246  AC A0A261BPH2
#=GS A0A261BPH2/169-246  OS Caenorhabditis latens
#=GS A0A261BPH2/169-246  DE Uncharacterized protein
#=GS A0A261BPH2/169-246  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A1S4FG44/257-326  AC A0A1S4FG44
#=GS A0A1S4FG44/257-326  OS Aedes aegypti
#=GS A0A1S4FG44/257-326  DE Brain-specific homeobox protein, putative
#=GS A0A1S4FG44/257-326  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia; Aedes aegypti; 
#=GS A0A182QKK3/393-460  AC A0A182QKK3
#=GS A0A182QKK3/393-460  OS Anopheles farauti
#=GS A0A182QKK3/393-460  DE Uncharacterized protein
#=GS A0A182QKK3/393-460  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles farauti; 
#=GS A0A182U188/320-390  AC A0A182U188
#=GS A0A182U188/320-390  OS Anopheles melas
#=GS A0A182U188/320-390  DE Uncharacterized protein
#=GS A0A182U188/320-390  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles melas; 
#=GS A0A182SHS4/117-187  AC A0A182SHS4
#=GS A0A182SHS4/117-187  OS Anopheles maculatus
#=GS A0A182SHS4/117-187  DE Uncharacterized protein
#=GS A0A182SHS4/117-187  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles maculatus group; Anopheles maculatus; 
#=GS A0A182MZ19/236-306  AC A0A182MZ19
#=GS A0A182MZ19/236-306  OS Anopheles dirus
#=GS A0A182MZ19/236-306  DE Uncharacterized protein
#=GS A0A182MZ19/236-306  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; leucosphyrus group; leucosphyrus subgroup; Anopheles dirus; 
#=GS A0A1W2W3Q2/297-383  AC A0A1W2W3Q2
#=GS A0A1W2W3Q2/297-383  OS Ciona intestinalis
#=GS A0A1W2W3Q2/297-383  DE homeobox protein Hox-D9a
#=GS A0A1W2W3Q2/297-383  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS B4GKW3/269-347      AC B4GKW3
#=GS B4GKW3/269-347      OS Drosophila persimilis
#=GS B4GKW3/269-347      DE GL25620
#=GS B4GKW3/269-347      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS A0A3B0KHR5/280-358  AC A0A3B0KHR5
#=GS A0A3B0KHR5/280-358  OS Drosophila guanche
#=GS A0A3B0KHR5/280-358  DE Blast:Brain-specific homeobox protein
#=GS A0A3B0KHR5/280-358  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS Q29K03/270-348      AC Q29K03
#=GS Q29K03/270-348      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29K03/270-348      DE Uncharacterized protein
#=GS Q29K03/270-348      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B4I5Z9/268-348      AC B4I5Z9
#=GS B4I5Z9/268-348      OS Drosophila sechellia
#=GS B4I5Z9/268-348      DE GM16987
#=GS B4I5Z9/268-348      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4QA29/268-348      AC B4QA29
#=GS B4QA29/268-348      OS Drosophila simulans
#=GS B4QA29/268-348      DE GD21734
#=GS B4QA29/268-348      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A3B0KCJ4/278-356  AC A0A3B0KCJ4
#=GS A0A3B0KCJ4/278-356  OS Drosophila guanche
#=GS A0A3B0KCJ4/278-356  DE Blast:Brain-specific homeobox protein
#=GS A0A3B0KCJ4/278-356  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B3NL33/268-348      AC B3NL33
#=GS B3NL33/268-348      OS Drosophila erecta
#=GS B3NL33/268-348      DE Uncharacterized protein
#=GS B3NL33/268-348      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS Q172Z6/257-326      AC Q172Z6
#=GS Q172Z6/257-326      OS Aedes aegypti
#=GS Q172Z6/257-326      DE AAEL007221-PA
#=GS Q172Z6/257-326      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia; Aedes aegypti; 
#=GS A0A182GDS9/258-325  AC A0A182GDS9
#=GS A0A182GDS9/258-325  OS Aedes albopictus
#=GS A0A182GDS9/258-325  DE Uncharacterized protein
#=GS A0A182GDS9/258-325  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia; Aedes albopictus; 
#=GF SQ 28
Q04787/268-348              ----ALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFSRS--
A0A1X7RC60/113-193          ------RLSSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDDDNGNDNE-S
Q19937/117-196              -------ECSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDDDNGNDNE-S
T1EK77/1-63                 ---------RRRKARTVFSDQQLSGLERRFDKQKYLSTPERIELANQLNLSETQVKTWFQNRRMKQKKTHRK------------------
T1EK90/1-63                 ---------RRRKARTVFSDQQLNGLEERFESQKYLSTPERVELASLLNLSETQVKTWFQNRRMKQKKVQRK------------------
Q7PVF1/255-325              MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
F7BLR9/238-324              ---IVMGQSRRRKARTVFTDQQLSGLERRFESQKYLSTPERVDLANALELTETQVKTWFQNRRMKFKKQVRCGKGDDGTQESTDEDSDVA
C3Y0U7/97-178               ------KPIRRRKARTVFSDSQLNGLEKRFESQKYLSTPERMDLAAALNLTETQVKTWFQNRRMKHKKLQRKRESDRPPSASSADDVA--
A0A1B0CMJ3/153-220          ---GALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A2G5UZU0/117-194          -------ECSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDD--GNDNE-S
E3LQU1/151-228              -------ECSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDD--GHDNE-S
G0NQX9/113-191              ------RLSSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDD--GNDNE-S
A0A261BPH2/169-246          -------ECSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDD--NSVDD--GHDNE-S
A0A1S4FG44/257-326          -GMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A182QKK3/393-460          --MSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQL--------------------
A0A182U188/320-390          MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A182SHS4/117-187          MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A182MZ19/236-306          MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A1W2W3Q2/297-383          ---IVMGQSRRRKARTVFTDQQLSGLERRFESQKYLSTPERVDLANALELTETQVKTWFQNRRMKFKKQVRCGKGDDGTQESTDEDSDVA
B4GKW3/269-347              ----ALRHCRRRKARTVFSDPQLSGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFS----
A0A3B0KHR5/280-358          ----ALRHCRRRKARTVFSDPQLSGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFS----
Q29K03/270-348              ----ALRHCRRRKARTVFSDPQLSGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFS----
B4I5Z9/268-348              ----ALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFSRS--
B4QA29/268-348              ----ALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFSRS--
A0A3B0KCJ4/278-356          ----ALRHCRRRKARTVFSDPQLSGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFS----
B3NL33/268-348              ----ALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD--NA-NEPVDFSRS--
Q172Z6/257-326              -GMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLR-------------------
A0A182GDS9/258-325          --MSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQNRRMKHKKQL--------------------
#=GC scorecons              000023445699999999895994999699859799999997899579597999999999999997995572120021012102121100
#=GC scorecons_70           _________***********_**_*******_*************_**_*******************__*___________________
#=GC scorecons_80           __________**********_**_***_***_*********_***_**_*******************__*___________________
#=GC scorecons_90           __________********_*_**_***_***_*_*******__**__*_*_**************_**______________________
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