# STOCKHOLM 1.0
#=GF ID 1.10.10.440/FF/000038
#=GF DE Uncharacterized protein, isoform B
#=GF AC 1.10.10.440/FF/000038
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.648
#=GS Q9VN31/512-595      AC Q9VN31
#=GS Q9VN31/512-595      OS Drosophila melanogaster
#=GS Q9VN31/512-595      DE Factor interacting with poly(A) polymerase 1
#=GS Q9VN31/512-595      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VN31/512-595      DR GO; GO:0005634; GO:0006398; GO:0017022; GO:0045944; 
#=GS A0A0B4KFB8/707-783  AC A0A0B4KFB8
#=GS A0A0B4KFB8/707-783  OS Drosophila melanogaster
#=GS A0A0B4KFB8/707-783  DE Uncharacterized protein, isoform C
#=GS A0A0B4KFB8/707-783  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS A0A0B4KFB8/707-783  DR GO; GO:0000398; GO:0071011; GO:0071013; 
#=GS A0A139WNL0/736-811  AC A0A139WNL0
#=GS A0A139WNL0/736-811  OS Tribolium castaneum
#=GS A0A139WNL0/736-811  DE Transcription elongation regulator 1-like Protein
#=GS A0A139WNL0/736-811  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS T1ELW4/445-519      AC T1ELW4
#=GS T1ELW4/445-519      OS Helobdella robusta
#=GS T1ELW4/445-519      DE Uncharacterized protein
#=GS T1ELW4/445-519      DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS B4K4P8/517-598      AC B4K4P8
#=GS B4K4P8/517-598      OS Drosophila mojavensis
#=GS B4K4P8/517-598      DE Uncharacterized protein
#=GS B4K4P8/517-598      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; 
#=GS B4GES9/693-770      AC B4GES9
#=GS B4GES9/693-770      OS Drosophila persimilis
#=GS B4GES9/693-770      DE GL22066
#=GS B4GES9/693-770      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS A0A1W4V3X1/710-786  AC A0A1W4V3X1
#=GS A0A1W4V3X1/710-786  OS Drosophila ficusphila
#=GS A0A1W4V3X1/710-786  DE transcription elongation regulator 1 isoform X1
#=GS A0A1W4V3X1/710-786  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS A0A3B0KDE2/728-805  AC A0A3B0KDE2
#=GS A0A3B0KDE2/728-805  OS Drosophila guanche
#=GS A0A3B0KDE2/728-805  DE Blast:Serine/threonine-protein kinase PAK 1
#=GS A0A3B0KDE2/728-805  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS A0A0P8YFE0/745-822  AC A0A0P8YFE0
#=GS A0A0P8YFE0/745-822  OS Drosophila ananassae
#=GS A0A0P8YFE0/745-822  DE Uncharacterized protein, isoform B
#=GS A0A0P8YFE0/745-822  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B5DVG0/729-806      AC B5DVG0
#=GS B5DVG0/729-806      OS Drosophila pseudoobscura pseudoobscura
#=GS B5DVG0/729-806      DE Uncharacterized protein, isoform D
#=GS B5DVG0/729-806      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS A0A0R3NNU0/732-809  AC A0A0R3NNU0
#=GS A0A0R3NNU0/732-809  OS Drosophila pseudoobscura pseudoobscura
#=GS A0A0R3NNU0/732-809  DE Uncharacterized protein, isoform I
#=GS A0A0R3NNU0/732-809  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS A0A0R1E8B8/711-786  AC A0A0R1E8B8
#=GS A0A0R1E8B8/711-786  OS Drosophila yakuba
#=GS A0A0R1E8B8/711-786  DE Uncharacterized protein, isoform B
#=GS A0A0R1E8B8/711-786  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS A0A1W4VLY0/512-597  AC A0A1W4VLY0
#=GS A0A1W4VLY0/512-597  OS Drosophila ficusphila
#=GS A0A1W4VLY0/512-597  DE pre-mRNA 3'-end-processing factor FIP1
#=GS A0A1W4VLY0/512-597  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4I3P8/512-595      AC B4I3P8
#=GS B4I3P8/512-595      OS Drosophila sechellia
#=GS B4I3P8/512-595      DE GM10761
#=GS B4I3P8/512-595      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B3P219/510-592      AC B3P219
#=GS B3P219/510-592      OS Drosophila erecta
#=GS B3P219/510-592      DE GG11521
#=GS B3P219/510-592      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS B4PTT8/510-593      AC B4PTT8
#=GS B4PTT8/510-593      OS Drosophila yakuba
#=GS B4PTT8/510-593      DE Uncharacterized protein
#=GS B4PTT8/510-593      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GF SQ 16
Q9VN31/512-595              --DDDRERRRREKEKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFEADPRYRALDSS-YREEYFEDYLHLLKEEKRKERDLKE
A0A0B4KFB8/707-783          --------RREKEDKLLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKFESDPRYRMVDSM-YREEYFEDYLHIMKEEKRKEREMR-
A0A139WNL0/736-811          -----------KEEKNQRREQVKKDFFAMLREHSDIDRHSHWADVKRKVDSDARYKAVDSSGQREDWFREYCKILKEEKKKAKEKDR
T1ELW4/445-519              ------------EESKLQKEKVKSNFFDLLKQTSSIDKHSRWADIKKKLESDSRYKAVDSSSRREDWFKDYLKTFGKESSDKHESNE
B4K4P8/517-598              ---DDRDRRRREKDKQLKKEQLRKDFLDMLRERHDIERHTRWYDIKKKFEADPRYRALDSA-YREEYFEDYLHILKEEKRKEREHK-
B4GES9/693-770              -------RRREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKLESDPRYRIVDSM-YREEYFEDYLHIMKEEKRKEREQR-
A0A1W4V3X1/710-786          --------RREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKFESDPRYRMVDSL-YREEYFEDYLHIMKEEKRKERELR-
A0A3B0KDE2/728-805          --------RREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKLESDPRYRIVDSM-YREEYFEDYLHVMKEEKRKEREQRE
A0A0P8YFE0/745-822          --------RREKEDKQMKKEQIRRDFLDMLRERHDIERHTRWYDIKKKLDSDLRYRMVDSM-YREEYFEDYLHIMKEEKRKEREQRE
B5DVG0/729-806              --------RREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKLESDPRYRIVDSM-YREEYFEDYLHIMKEEKRKEREQRE
A0A0R3NNU0/732-809          --------RREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKLESDPRYRIVDSM-YREEYFEDYLHIMKEEKRKEREQRE
A0A0R1E8B8/711-786          --------RREKEDKQLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKFESDHRYRVVDSM-YREEYFEDYLHIMKEEKRKEREM--
A0A1W4VLY0/512-597          SYEDDRERRRREKDKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFETDPRYRALDSS-YREEYFEDYLHLLKEEKRKERDLKE
B4I3P8/512-595              --DDDRERRRREKEKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFEADPRYRALDSS-YREEYFEDYLHLLKEEKRKERDLKE
B3P219/510-592              --DDDRERRRREKEKLLKKDQMRKDFLDMLRERHDIERHTRWYDVKKKFEADPRYRALDSS-YREEYFEDYLHLLKEEKRKERDLK-
B4PTT8/510-593              --DDDRERRRREKEKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFEADPRYRALDSS-YREEYFEDYLHLLKEEKRKVRDLKE
#=GC scorecons              000111014434677367877576797779876679789679597989576959975699505997696897655779767577343
#=GC scorecons_70           ____________***_*****_***********_********_*****_*_*_***_***___**********__******_**___
#=GC scorecons_80           ______________*___***_*_**_*****__*****_**_*****_*_*_***__**___***_*_***___****_*__*___
#=GC scorecons_90           __________________*______*___*_____*__*__*_*_***___*_**___**___**__*_**______*_________
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