# STOCKHOLM 1.0
#=GF ID 1.10.10.440/FF/000036
#=GF DE Pre-mRNA-processing factor 40
#=GF AC 1.10.10.440/FF/000036
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 64.552
#=GS P33203/356-416      AC P33203
#=GS P33203/356-416      OS Saccharomyces cerevisiae S288C
#=GS P33203/356-416      DE Pre-mRNA-processing protein PRP40
#=GS P33203/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P33203/356-416      DR GO; GO:0000398; GO:0003723; GO:0005515; GO:0005634; GO:0005685; GO:0071004; 
#=GS A0A0D0URN2/373-452  AC A0A0D0URN2
#=GS A0A0D0URN2/373-452  OS Cryptococcus gattii VGII Ram5
#=GS A0A0D0URN2/373-452  DE Unplaced genomic scaffold supercont1.18, whole genome shotgun sequence
#=GS A0A0D0URN2/373-452  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS Q759W3/349-409      AC Q759W3
#=GS Q759W3/349-409      OS Eremothecium gossypii ATCC 10895
#=GS Q759W3/349-409      DE ADR159Cp
#=GS Q759W3/349-409      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XCJ3/349-409      AC R9XCJ3
#=GS R9XCJ3/349-409      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XCJ3/349-409      DE AaceriADR159Cp
#=GS R9XCJ3/349-409      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS Q5KEX2/373-453      AC Q5KEX2
#=GS Q5KEX2/373-453      OS Cryptococcus neoformans var. neoformans JEC21
#=GS Q5KEX2/373-453      DE Formin binding protein 3, putative
#=GS Q5KEX2/373-453      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A0L8VLU7/356-416  AC A0A0L8VLU7
#=GS A0A0L8VLU7/356-416  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VLU7/356-416  DE PRP40p U1 snRNP protein involved in splicing
#=GS A0A0L8VLU7/356-416  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS E6R7S2/373-453      AC E6R7S2
#=GS E6R7S2/373-453      OS Cryptococcus gattii WM276
#=GS E6R7S2/373-453      DE Formin binding protein 3, putative
#=GS E6R7S2/373-453      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A0D0VDW0/373-453  AC A0A0D0VDW0
#=GS A0A0D0VDW0/373-453  OS Cryptococcus gattii CA1280
#=GS A0A0D0VDW0/373-453  DE Unplaced genomic scaffold supercont1.15, whole genome shotgun sequence
#=GS A0A0D0VDW0/373-453  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; 
#=GS A0A0D0WLX3/373-453  AC A0A0D0WLX3
#=GS A0A0D0WLX3/373-453  OS Cryptococcus gattii VGIV IND107
#=GS A0A0D0WLX3/373-453  DE Unplaced genomic scaffold supercont2.17, whole genome shotgun sequence
#=GS A0A0D0WLX3/373-453  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; 
#=GS J9VN88/373-453      AC J9VN88
#=GS J9VN88/373-453      OS Cryptococcus neoformans var. grubii H99
#=GS J9VN88/373-453      DE Pre-mRNA-processing factor 40
#=GS J9VN88/373-453      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A095C5T8/373-452  AC A0A095C5T8
#=GS A0A095C5T8/373-452  OS Cryptococcus gattii VGII R265
#=GS A0A095C5T8/373-452  DE Pre-mRNA-processing factor 40
#=GS A0A095C5T8/373-452  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS F5H952/373-453      AC F5H952
#=GS F5H952/373-453      OS Cryptococcus neoformans var. neoformans B-3501A
#=GS F5H952/373-453      DE Uncharacterized protein
#=GS F5H952/373-453      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A0D0YJ70/373-453  AC A0A0D0YJ70
#=GS A0A0D0YJ70/373-453  OS Cryptococcus gattii EJB2
#=GS A0A0D0YJ70/373-453  DE Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence
#=GS A0A0D0YJ70/373-453  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A225YHR1/372-452  AC A0A225YHR1
#=GS A0A225YHR1/372-452  OS Cryptococcus neoformans var. grubii c45
#=GS A0A225YHR1/372-452  DE Pre-mRNA-processing factor 40
#=GS A0A225YHR1/372-452  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A226BGH3/373-453  AC A0A226BGH3
#=GS A0A226BGH3/373-453  OS Cryptococcus neoformans var. grubii Bt85
#=GS A0A226BGH3/373-453  DE Pre-mRNA-processing factor 40
#=GS A0A226BGH3/373-453  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS N1P7Z4/356-416      AC N1P7Z4
#=GS N1P7Z4/356-416      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P7Z4/356-416      DE Prp40p
#=GS N1P7Z4/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZZV3/356-416      AC A6ZZV3
#=GS A6ZZV3/356-416      OS Saccharomyces cerevisiae YJM789
#=GS A6ZZV3/356-416      DE U1 snRNP protein
#=GS A6ZZV3/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WI19/356-416      AC G2WI19
#=GS G2WI19/356-416      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WI19/356-416      DE K7_Prp40p
#=GS G2WI19/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZCF5/356-416      AC C8ZCF5
#=GS C8ZCF5/356-416      OS Saccharomyces cerevisiae EC1118
#=GS C8ZCF5/356-416      DE Prp40p
#=GS C8ZCF5/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LR72/356-416      AC B3LR72
#=GS B3LR72/356-416      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LR72/356-416      DE U1 snRNP protein
#=GS B3LR72/356-416      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 20
P33203/356-416              -----------RIARDNFKSLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
A0A0D0URN2/373-452          -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDIGEEVERAAE-
Q759W3/349-409              -----------RIARDAFKELLSE--HKASIRYNTSWNSIYQLIKNDPRFLNTLGRSGSSALDLFLDQVEE-----HRL---
R9XCJ3/349-409              -----------RIARDAFKELLRE--HKASIRYNTSWNSIYQLIKNDPRFLNTLGRSGSSALDLFLDQVEE-----HRL---
Q5KEX2/373-453              -KLKVEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A0L8VLU7/356-416          -----------RIARDNFKNLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
E6R7S2/373-453              -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A0D0VDW0/373-453          -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A0D0WLX3/373-453          -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
J9VN88/373-453              -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A095C5T8/373-452          -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDIGEEVERAAE-
F5H952/373-453              -KLKVEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A0D0YJ70/373-453          -KLKIEAARNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
A0A225YHR1/372-452          RKLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDTYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAE-
A0A226BGH3/373-453          -KLKIEATRNARKAREGFKALLKELDHNGELTRTSKFKDIYPKIKNDERYIALLGLSGSSPLELWMDAVDDISEEVERAAEK
N1P7Z4/356-416              -----------RIARDNFKSLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
A6ZZV3/356-416              -----------RIARDNFKSLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
G2WI19/356-416              -----------RIARDNFKSLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
C8ZCF5/356-416              -----------RIARDNFKNLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
B3LR72/356-416              -----------RIARDNFKNLLRE--VPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDE-----QRM---
#=GC scorecons              0111111111194997599499691154456546655576975996959764599469994979569498711111595110
#=GC scorecons_70           ___________*_***_**_****______*_______*_**_**_*_***__**__***_***_**_***______*____
#=GC scorecons_80           ___________*_**__**_**_*______________*_**_**_*_**___**__***_*_*__*_**_______*____
#=GC scorecons_90           ___________*_**__**_**_*________________*__**_*_*____**__***_*_*__*_**_______*____
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