# STOCKHOLM 1.0
#=GF ID 1.10.10.2170/FF/000002
#=GF DE DNA-binding protein RAP1
#=GF AC 1.10.10.2170/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 12.424
#=GS 4bjtC02/153-202     AC P11938
#=GS 4bjtC02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bjtC02/153-202     DE DNA-binding protein RAP1
#=GS 4bjtC02/153-202     DR CATH; 4bjt; C:778-827; 
#=GS 4bjtC02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bjtC02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bjtB02/153-202     AC P11938
#=GS 4bjtB02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bjtB02/153-202     DE DNA-binding protein RAP1
#=GS 4bjtB02/153-202     DR CATH; 4bjt; B:778-827; 
#=GS 4bjtB02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bjtB02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bjtA02/153-202     AC P11938
#=GS 4bjtA02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bjtA02/153-202     DE DNA-binding protein RAP1
#=GS 4bjtA02/153-202     DR CATH; 4bjt; A:778-827; 
#=GS 4bjtA02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bjtA02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bj6E02/153-202     AC P11938
#=GS 4bj6E02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bj6E02/153-202     DE DNA-binding protein RAP1
#=GS 4bj6E02/153-202     DR CATH; 4bj6; E:778-825; 
#=GS 4bj6E02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bj6E02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bj6C02/153-202     AC P11938
#=GS 4bj6C02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bj6C02/153-202     DE DNA-binding protein RAP1
#=GS 4bj6C02/153-202     DR CATH; 4bj6; C:778-825; 
#=GS 4bj6C02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bj6C02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bj5E02/153-202     AC P11938
#=GS 4bj5E02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bj5E02/153-202     DE DNA-binding protein RAP1
#=GS 4bj5E02/153-202     DR CATH; 4bj5; E:778-825; 
#=GS 4bj5E02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bj5E02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 4bj5C02/153-202     AC P11938
#=GS 4bj5C02/153-202     OS Saccharomyces cerevisiae S288C
#=GS 4bj5C02/153-202     DE DNA-binding protein RAP1
#=GS 4bj5C02/153-202     DR CATH; 4bj5; C:778-825; 
#=GS 4bj5C02/153-202     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4bj5C02/153-202     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 3owtB02/108-157     AC P11938
#=GS 3owtB02/108-157     OS Saccharomyces cerevisiae S288C
#=GS 3owtB02/108-157     DE DNA-binding protein RAP1
#=GS 3owtB02/108-157     DR CATH; 3owt; B:778-823; 
#=GS 3owtB02/108-157     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 3owtB02/108-157     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS 3owtA02/108-157     AC P11938
#=GS 3owtA02/108-157     OS Saccharomyces cerevisiae S288C
#=GS 3owtA02/108-157     DE DNA-binding protein RAP1
#=GS 3owtA02/108-157     DR CATH; 3owt; A:778-824; 
#=GS 3owtA02/108-157     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 3owtA02/108-157     DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS P11938/778-827      AC P11938
#=GS P11938/778-827      OS Saccharomyces cerevisiae S288C
#=GS P11938/778-827      DE DNA-binding protein RAP1
#=GS P11938/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P11938/778-827      DR GO; GO:0000122; GO:0000228; GO:0000723; GO:0000784; GO:0000981; GO:0000987; GO:0001085; GO:0001094; GO:0003691; GO:0003700; GO:0005515; GO:0005634; GO:0005829; GO:0006348; GO:0008301; GO:0010833; GO:0017025; GO:0030466; GO:0031492; GO:0031848; GO:0031936; GO:0032993; GO:0035390; GO:0042162; GO:0043565; GO:0045944; GO:0051880; GO:0070187; GO:0070200; GO:0071169; GO:0071919; GO:0072363; 
#=GS J8Q3D2/771-820      AC J8Q3D2
#=GS J8Q3D2/771-820      OS Saccharomyces arboricola H-6
#=GS J8Q3D2/771-820      DE Rap1p
#=GS J8Q3D2/771-820      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces arboricola; 
#=GS H0GMB9/778-827      AC H0GMB9
#=GS H0GMB9/778-827      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GMB9/778-827      DE Rap1p
#=GS H0GMB9/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VIC0/778-827  AC A0A0L8VIC0
#=GS A0A0L8VIC0/778-827  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VIC0/778-827  DE RAP1p DNA-binding transcription regulator that binds many loci
#=GS A0A0L8VIC0/778-827  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A0L8RCL2/780-829  AC A0A0L8RCL2
#=GS A0A0L8RCL2/780-829  OS Saccharomyces eubayanus
#=GS A0A0L8RCL2/780-829  DE RAP1-like protein
#=GS A0A0L8RCL2/780-829  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS C8ZG17/778-827      AC C8ZG17
#=GS C8ZG17/778-827      OS Saccharomyces cerevisiae EC1118
#=GS C8ZG17/778-827      DE Rap1p
#=GS C8ZG17/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NXQ0/757-806      AC N1NXQ0
#=GS N1NXQ0/757-806      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NXQ0/757-806      DE Rap1p
#=GS N1NXQ0/757-806      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZRM4/778-827      AC A6ZRM4
#=GS A6ZRM4/778-827      OS Saccharomyces cerevisiae YJM789
#=GS A6ZRM4/778-827      DE Repressor activator protein
#=GS A6ZRM4/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LP60/778-827      AC B3LP60
#=GS B3LP60/778-827      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LP60/778-827      DE Repressor activator protein
#=GS B3LP60/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WLP7/778-827      AC G2WLP7
#=GS G2WLP7/778-827      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WLP7/778-827      DE K7_Rap1p
#=GS G2WLP7/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS H0GZY2/777-826      AC H0GZY2
#=GS H0GZY2/777-826      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GZY2/777-826      DE Rap1p
#=GS H0GZY2/777-826      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS C7GPE1/778-827      AC C7GPE1
#=GS C7GPE1/778-827      OS Saccharomyces cerevisiae JAY291
#=GS C7GPE1/778-827      DE Rap1p
#=GS C7GPE1/778-827      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 21
4bjtC02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bjtB02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bjtA02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bj6E02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bj6C02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bj5E02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
4bj5C02/153-202             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
3owtB02/108-157             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
3owtA02/108-157             NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
P11938/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
J8Q3D2/771-820              NPPPHVPGIWTHEDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
H0GMB9/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
A0A0L8VIC0/778-827          NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
A0A0L8RCL2/780-829          NPPPHVPGIWTHEDDESLKSNDQEQLRKLVKKHGTGRMEMRKRFFEKDLL
C8ZG17/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
N1NXQ0/757-806              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
A6ZRM4/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
B3LP60/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
G2WLP7/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
H0GZY2/777-826              NPPPNVPGIWTREDDESLKDNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
C7GPE1/778-827              NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL
#=GC scorecons              99996999999769999996999997999999999999999999999999
#=GC scorecons_70           **************************************************
#=GC scorecons_80           ****_*******_******_******************************
#=GC scorecons_90           ****_******__******_*****_************************
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