# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000846
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/000846
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 13.620
#=GS Q9LD95/384-460      AC Q9LD95
#=GS Q9LD95/384-460      OS Arabidopsis thaliana
#=GS Q9LD95/384-460      DE RNA polymerase sigma factor sigF, chloroplastic
#=GS Q9LD95/384-460      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LD95/384-460      DR GO; GO:0005515; GO:0006352; GO:0009507; GO:0009536; GO:0016987; GO:0045893; GO:0071482; GO:0071483; GO:0090351; 
#=GS M4DL32/370-446      AC M4DL32
#=GS M4DL32/370-446      OS Brassica rapa subsp. pekinensis
#=GS M4DL32/370-446      DE RNA polymerase sigma factor
#=GS M4DL32/370-446      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4MIB9/383-459      AC V4MIB9
#=GS V4MIB9/383-459      OS Eutrema salsugineum
#=GS V4MIB9/383-459      DE RNA polymerase sigma factor
#=GS V4MIB9/383-459      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS R0HNL5/384-461      AC R0HNL5
#=GS R0HNL5/384-461      OS Capsella rubella
#=GS R0HNL5/384-461      DE RNA polymerase sigma factor
#=GS R0HNL5/384-461      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A0D3C4P0/378-454  AC A0A0D3C4P0
#=GS A0A0D3C4P0/378-454  OS Brassica oleracea var. oleracea
#=GS A0A0D3C4P0/378-454  DE RNA polymerase sigma factor
#=GS A0A0D3C4P0/378-454  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS E4MX68/384-460      AC E4MX68
#=GS E4MX68/384-460      OS Eutrema halophilum
#=GS E4MX68/384-460      DE RNA polymerase sigma factor
#=GS E4MX68/384-460      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema halophilum; 
#=GS A0A078JL81/175-251  AC A0A078JL81
#=GS A0A078JL81/175-251  OS Brassica napus
#=GS A0A078JL81/175-251  DE BnaAnng21640D protein
#=GS A0A078JL81/175-251  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS D7LJA3/383-459      AC D7LJA3
#=GS D7LJA3/383-459      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LJA3/383-459      DE RNA polymerase sigma factor
#=GS D7LJA3/383-459      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS V4M7N8/384-460      AC V4M7N8
#=GS V4M7N8/384-460      OS Eutrema salsugineum
#=GS V4M7N8/384-460      DE RNA polymerase sigma factor
#=GS V4M7N8/384-460      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A078G1I1/381-457  AC A0A078G1I1
#=GS A0A078G1I1/381-457  OS Brassica napus
#=GS A0A078G1I1/381-457  DE RNA polymerase sigma factor
#=GS A0A078G1I1/381-457  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GF SQ 10
Q9LD95/384-460              LPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGI-
M4DL32/370-446              LPENVYMLLGKVSEARKTCVQEGNYLPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEVTPDSGI-
V4MIB9/383-459              LPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGI-
R0HNL5/384-461              LPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIE
A0A0D3C4P0/378-454          LPENVYMLLGKVSEARKTCVQEGNYLPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEVTPDSGI-
E4MX68/384-460              LPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGI-
A0A078JL81/175-251          LPENVYMLLGKVSEARKTCVQEGNYLPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEVTPDSGI-
D7LJA3/383-459              LPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGI-
V4M7N8/384-460              LPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGI-
A0A078G1I1/381-457          LPENVYMLLGKVSEARKTCVQEGNYLPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEVTPDSGI-
#=GC scorecons              999999999999999999979799949999699699999799999999999999999999999996999979999990
#=GC scorecons_70           *************************_***************************************_***********_
#=GC scorecons_80           *************************_****_**_*****_*************************_***********_
#=GC scorecons_90           *******************_*_***_****_**_*****_*************************_****_******_
//