# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000669
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/000669
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 23.047
#=GS 3hugQ00/1-92       AC P9WGH5
#=GS 3hugQ00/1-92       OS Mycobacterium tuberculosis H37Rv
#=GS 3hugQ00/1-92       DE ECF RNA polymerase sigma factor SigL
#=GS 3hugQ00/1-92       DR CATH; 3hug; Q:101-177; 
#=GS 3hugQ00/1-92       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 3hugQ00/1-92       DR GO; GO:0005515; GO:0006355; GO:0016987; 
#=GS 3hugI00/1-92       AC P9WGH5
#=GS 3hugI00/1-92       OS Mycobacterium tuberculosis H37Rv
#=GS 3hugI00/1-92       DE ECF RNA polymerase sigma factor SigL
#=GS 3hugI00/1-92       DR CATH; 3hug; I:101-177; 
#=GS 3hugI00/1-92       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 3hugI00/1-92       DR GO; GO:0005515; GO:0006355; GO:0016987; 
#=GS 3hugC00/1-92       AC P9WGH5
#=GS 3hugC00/1-92       OS Mycobacterium tuberculosis H37Rv
#=GS 3hugC00/1-92       DE ECF RNA polymerase sigma factor SigL
#=GS 3hugC00/1-92       DR CATH; 3hug; C:101-177; 
#=GS 3hugC00/1-92       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 3hugC00/1-92       DR GO; GO:0005515; GO:0006355; GO:0016987; 
#=GS 3hugA00/1-92       AC P9WGH5
#=GS 3hugA00/1-92       OS Mycobacterium tuberculosis H37Rv
#=GS 3hugA00/1-92       DE ECF RNA polymerase sigma factor SigL
#=GS 3hugA00/1-92       DR CATH; 3hug; A:98-177; 
#=GS 3hugA00/1-92       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 3hugA00/1-92       DR GO; GO:0005515; GO:0006355; GO:0016987; 
#=GS P9WGH5/94-177      AC P9WGH5
#=GS P9WGH5/94-177      OS Mycobacterium tuberculosis H37Rv
#=GS P9WGH5/94-177      DE ECF RNA polymerase sigma factor SigL
#=GS P9WGH5/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WGH5/94-177      DR GO; GO:0005515; GO:0006355; GO:0016987; 
#=GS A0A0I9V357/80-163  AC A0A0I9V357
#=GS A0A0I9V357/80-163  OS Mycobacterium haemophilum
#=GS A0A0I9V357/80-163  DE RNA polymerase sigma factor
#=GS A0A0I9V357/80-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium haemophilum; 
#=GS A0A1A3HPN0/80-163  AC A0A1A3HPN0
#=GS A0A1A3HPN0/80-163  OS Mycobacterium sp. 1423905.2
#=GS A0A1A3HPN0/80-163  DE RNA polymerase sigma factor
#=GS A0A1A3HPN0/80-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 1423905.2; 
#=GS G0TEW3/94-177      AC G0TEW3
#=GS G0TEW3/94-177      OS Mycobacterium canettii CIPT 140010059
#=GS G0TEW3/94-177      DE RNA polymerase sigma factor
#=GS G0TEW3/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium canettii; 
#=GS A0A1R3XWN4/94-177  AC A0A1R3XWN4
#=GS A0A1R3XWN4/94-177  OS Mycobacterium tuberculosis variant bovis AF2122/97
#=GS A0A1R3XWN4/94-177  DE RNA polymerase sigma factor
#=GS A0A1R3XWN4/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A5U0C1/94-177      AC A5U0C1
#=GS A5U0C1/94-177      OS Mycobacterium tuberculosis H37Ra
#=GS A5U0C1/94-177      DE RNA polymerase sigma factor
#=GS A5U0C1/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A120IZZ2/94-177  AC A0A120IZZ2
#=GS A0A120IZZ2/94-177  OS Mycobacterium tuberculosis variant africanum
#=GS A0A120IZZ2/94-177  DE RNA polymerase sigma factor
#=GS A0A120IZZ2/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A328GVQ2/94-177  AC A0A328GVQ2
#=GS A0A328GVQ2/94-177  OS Mycobacterium tuberculosis variant pinnipedii
#=GS A0A328GVQ2/94-177  DE RNA polymerase sigma factor
#=GS A0A328GVQ2/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS I3NI73/94-177      AC I3NI73
#=GS I3NI73/94-177      OS Mycobacterium tuberculosis variant bovis
#=GS I3NI73/94-177      DE RNA polymerase sigma factor
#=GS I3NI73/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS R4MFF4/94-177      AC R4MFF4
#=GS R4MFF4/94-177      OS Mycobacterium tuberculosis CAS/NITR204
#=GS R4MFF4/94-177      DE RNA polymerase sigma factor
#=GS R4MFF4/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0K2HT30/94-177  AC A0A0K2HT30
#=GS A0A0K2HT30/94-177  OS Mycobacterium tuberculosis variant bovis BCG
#=GS A0A0K2HT30/94-177  DE RNA polymerase sigma factor
#=GS A0A0K2HT30/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0H3M278/94-177  AC A0A0H3M278
#=GS A0A0H3M278/94-177  OS Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
#=GS A0A0H3M278/94-177  DE RNA polymerase sigma factor
#=GS A0A0H3M278/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A045IR27/94-177  AC A0A045IR27
#=GS A0A045IR27/94-177  OS Mycobacterium tuberculosis
#=GS A0A045IR27/94-177  DE RNA polymerase sigma factor
#=GS A0A045IR27/94-177  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WGH4/94-177      AC P9WGH4
#=GS P9WGH4/94-177      OS Mycobacterium tuberculosis CDC1551
#=GS P9WGH4/94-177      DE ECF RNA polymerase sigma factor SigL
#=GS P9WGH4/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS H8EXN1/94-177      AC H8EXN1
#=GS H8EXN1/94-177      OS Mycobacterium tuberculosis str. Erdman = ATCC 35801
#=GS H8EXN1/94-177      DE ECF RNA polymerase sigma factor SigL
#=GS H8EXN1/94-177      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0T9DYI4/59-145  AC A0A0T9DYI4
#=GS A0A0T9DYI4/59-145  OS Mycobacterium tuberculosis
#=GS A0A0T9DYI4/59-145  DE RNA polymerase sigma factor
#=GS A0A0T9DYI4/59-145  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF SQ 20
3hugQ00/1-92               MGSSHHHHHHSQDPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
3hugI00/1-92               MGSSHHHHHHSQDPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
3hugC00/1-92               MGSSHHHHHHSQDPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
3hugA00/1-92               MGSSHHHHHHSQDPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
P9WGH5/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A0I9V357/80-163          --------DEPGVPEQSSPDEVDAALDRLLIGDALAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A1A3HPN0/80-163          --------DEAGAPEQSTPDEVNSALDRLLIADALVQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
G0TEW3/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A1R3XWN4/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A5U0C1/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A120IZZ2/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A328GVQ2/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
I3NI73/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
R4MFF4/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A0K2HT30/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A0H3M278/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A045IR27/94-177          --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
P9WGH4/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
H8EXN1/94-177              --------DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
A0A0T9DYI4/59-145          -GST----DQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
#=GC scorecons             11111111557549999899998899999998999899999999997999999979999999999999999999999999999999999999
#=GC scorecons_70          __________*__*******************************************************************************
#=GC scorecons_80          __________*__*******************************************************************************
#=GC scorecons_90          _____________*********************************_*******_*************************************
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