# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000606
#=GF DE Transcription factor E
#=GF AC 1.10.10.10/FF/000606
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 23.373
#=GS A0RYF4/3-88      AC A0RYF4
#=GS A0RYF4/3-88      OS Cenarchaeum symbiosum A
#=GS A0RYF4/3-88      DE Transcription factor E
#=GS A0RYF4/3-88      DR ORG; Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarchaeum; Cenarchaeum symbiosum; 
#=GS A9A625/3-88      AC A9A625
#=GS A9A625/3-88      OS Nitrosopumilus maritimus SCM1
#=GS A9A625/3-88      DE Transcription factor E
#=GS A9A625/3-88      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS A0A087S355/3-88  AC A0A087S355
#=GS A0A087S355/3-88  OS Marine Group I thaumarchaeote SCGC AAA799-P11
#=GS A0A087S355/3-88  DE Transcription factor E
#=GS A0A087S355/3-88  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-P11; 
#=GS A0A087RVT4/3-88  AC A0A087RVT4
#=GS A0A087RVT4/3-88  OS Marine Group I thaumarchaeote SCGC RSA3
#=GS A0A087RVT4/3-88  DE Transcription factor E
#=GS A0A087RVT4/3-88  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC RSA3; 
#=GS A0A087RMX8/3-88  AC A0A087RMX8
#=GS A0A087RMX8/3-88  OS Marine Group I thaumarchaeote SCGC AAA799-D11
#=GS A0A087RMX8/3-88  DE Transcription factor E
#=GS A0A087RMX8/3-88  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-D11; 
#=GS A0A081S5P4/3-88  AC A0A081S5P4
#=GS A0A081S5P4/3-88  OS Marine Group I thaumarchaeote SCGC AAA799-E16
#=GS A0A081S5P4/3-88  DE Transcription factor E
#=GS A0A081S5P4/3-88  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-E16; 
#=GS V6AQW9/4-88      AC V6AQW9
#=GS V6AQW9/4-88      OS Thaumarchaeota archaeon N4
#=GS V6AQW9/4-88      DE Transcription factor E
#=GS V6AQW9/4-88      DR ORG; Archaea; Thaumarchaeota; Thaumarchaeota archaeon N4; 
#=GS A0A075H0T8/5-89  AC A0A075H0T8
#=GS A0A075H0T8/5-89  OS uncultured marine thaumarchaeote KM3_204_F10
#=GS A0A075H0T8/5-89  DE Transcription factor E
#=GS A0A075H0T8/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_204_F10; 
#=GS A0A075GR37/5-89  AC A0A075GR37
#=GS A0A075GR37/5-89  OS uncultured marine thaumarchaeote KM3_172_D05
#=GS A0A075GR37/5-89  DE Transcription factor E
#=GS A0A075GR37/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_172_D05; 
#=GS A0A075H8M1/5-89  AC A0A075H8M1
#=GS A0A075H8M1/5-89  OS uncultured marine thaumarchaeote KM3_47_A04
#=GS A0A075H8M1/5-89  DE Transcription factor E
#=GS A0A075H8M1/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_47_A04; 
#=GS A0A075GFK8/5-89  AC A0A075GFK8
#=GS A0A075GFK8/5-89  OS uncultured marine thaumarchaeote KM3_157_H08
#=GS A0A075GFK8/5-89  DE Transcription factor E
#=GS A0A075GFK8/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_157_H08; 
#=GS A0A075H3R0/5-89  AC A0A075H3R0
#=GS A0A075H3R0/5-89  OS uncultured marine thaumarchaeote KM3_47_A03
#=GS A0A075H3R0/5-89  DE Transcription factor E
#=GS A0A075H3R0/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_47_A03; 
#=GS A0A075G6P1/5-89  AC A0A075G6P1
#=GS A0A075G6P1/5-89  OS uncultured marine thaumarchaeote KM3_107_D09
#=GS A0A075G6P1/5-89  DE Transcription factor E
#=GS A0A075G6P1/5-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_107_D09; 
#=GS A0A075GV43/3-88  AC A0A075GV43
#=GS A0A075GV43/3-88  OS uncultured marine thaumarchaeote KM3_24_H04
#=GS A0A075GV43/3-88  DE Transcription factor E
#=GS A0A075GV43/3-88  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_24_H04; 
#=GS A0A0T5ZG90/3-88  AC A0A0T5ZG90
#=GS A0A0T5ZG90/3-88  OS Thaumarchaeota archaeon CSP1-1
#=GS A0A0T5ZG90/3-88  DE Transcription factor E
#=GS A0A0T5ZG90/3-88  DR ORG; Archaea; Thaumarchaeota; Thaumarchaeota archaeon CSP1-1; 
#=GS S2E5T1/3-88      AC S2E5T1
#=GS S2E5T1/3-88      OS Candidatus Nitrosarchaeum limnium BG20
#=GS S2E5T1/3-88      DE Transcription factor E
#=GS S2E5T1/3-88      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; Candidatus Nitrosarchaeum limnium; 
#=GS A0A2Z2HRJ6/3-88  AC A0A2Z2HRJ6
#=GS A0A2Z2HRJ6/3-88  OS Candidatus Nitrosomarinus catalina
#=GS A0A2Z2HRJ6/3-88  DE Transcription factor E
#=GS A0A2Z2HRJ6/3-88  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosomarinus; Candidatus Nitrosomarinus catalina; 
#=GS A0A2D7BN59/3-88  AC A0A2D7BN59
#=GS A0A2D7BN59/3-88  OS Nitrosopumilus sp.
#=GS A0A2D7BN59/3-88  DE Transcription factor E
#=GS A0A2D7BN59/3-88  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp.; 
#=GS H1EYK3/3-88      AC H1EYK3
#=GS H1EYK3/3-88      OS Candidatus Nitrosopumilus salaria BD31
#=GS H1EYK3/3-88      DE Transcription factor E
#=GS H1EYK3/3-88      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus salaria; 
#=GS A0A3M6K8Y7/3-88  AC A0A3M6K8Y7
#=GS A0A3M6K8Y7/3-88  OS Nitrosopumilus sp.
#=GS A0A3M6K8Y7/3-88  DE Transcription factor E
#=GS A0A3M6K8Y7/3-88  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp.; 
#=GF SQ 20
A0RYF4/3-88              DKYEDPFIRIAVMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLISGVRVKDERKGWFVYRWRSRREEVE
A9A625/3-88              DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A087S355/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A087RVT4/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A087RMX8/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A081S5P4/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
V6AQW9/4-88              -SYEDPFVRISAMIGGDEYLKVARALLKAEDATDEEIASSTGLRINMVRKVLYDLFGKALITGIRVKDERKGWFVYRWRSRKDEVE
A0A075H0T8/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075GR37/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075H8M1/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075GFK8/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075H3R0/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075G6P1/5-89          -KYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075GV43/3-88          DKYEDPFVKISHMIGGDEYLKVSRSLLKSEDATDEEIASSTGLRINMVRKVLYDLFGKGLITGIRVKDERKGWFVYRWRSRRDEVE
A0A0T5ZG90/3-88          DKYEDPFVRISTMIGGDEYLKVARSLLKSEDATDEEIASSTGLRINMVRKVLYDLFGKALITGIRVKDEKKGWFVYRWRSRRDEVE
S2E5T1/3-88              DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A2Z2HRJ6/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A2D7BN59/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
H1EYK3/3-88              DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A3M6K8Y7/3-88          DKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
#=GC scorecons           27999998796399999999998989996699999999999999999999999999996998989999989999999996987999
#=GC scorecons_70        _*********__****************_*********************************************************
#=GC scorecons_80        _*******_*__****************__****************************_********************_******
#=GC scorecons_90        __******_*__************_***__****************************_********************_**_***
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