# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000565
#=GF DE RNA polymerase sigma factor SigJ
#=GF AC 1.10.10.10/FF/000565
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 35.829
#=GS L0TCG5/107-160      AC L0TCG5
#=GS L0TCG5/107-160      OS Mycobacterium tuberculosis H37Rv
#=GS L0TCG5/107-160      DE ECF RNA polymerase sigma factor SigJ
#=GS L0TCG5/107-160      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS L0TCG5/107-160      DR GO; GO:0016987; 
#=GS A0A1X0DCD4/110-163  AC A0A1X0DCD4
#=GS A0A1X0DCD4/110-163  OS Mycobacterium heidelbergense
#=GS A0A1X0DCD4/110-163  DE RNA polymerase sigma factor SigJ
#=GS A0A1X0DCD4/110-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium heidelbergense; 
#=GS X8CA10/119-171      AC X8CA10
#=GS X8CA10/119-171      OS Mycobacterium intracellulare 1956
#=GS X8CA10/119-171      DE RNA polymerase sigma factor, sigma-70 family protein
#=GS X8CA10/119-171      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; 
#=GS I2AII6/119-171      AC I2AII6
#=GS I2AII6/119-171      OS Mycobacterium sp. MOTT36Y
#=GS I2AII6/119-171      DE RNA polymerase sigma factor SigJ
#=GS I2AII6/119-171      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. MOTT36Y; 
#=GS A0A1A3QP88/111-163  AC A0A1A3QP88
#=GS A0A1A3QP88/111-163  OS Mycobacterium sp. 1081908.1
#=GS A0A1A3QP88/111-163  DE RNA polymerase subunit sigma
#=GS A0A1A3QP88/111-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 1081908.1; 
#=GS A0A1X1UR34/113-166  AC A0A1X1UR34
#=GS A0A1X1UR34/113-166  OS Mycobacterium fragae
#=GS A0A1X1UR34/113-166  DE RNA polymerase subunit sigma
#=GS A0A1X1UR34/113-166  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium fragae; 
#=GS A0A0I9Z9R4/113-164  AC A0A0I9Z9R4
#=GS A0A0I9Z9R4/113-164  OS Mycobacterium haemophilum
#=GS A0A0I9Z9R4/113-164  DE RNA polymerase sigma factor SigJ
#=GS A0A0I9Z9R4/113-164  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium haemophilum; 
#=GS A0A1A2PB18/111-162  AC A0A1A2PB18
#=GS A0A1A2PB18/111-162  OS Mycobacterium sp. E1319
#=GS A0A1A2PB18/111-162  DE RNA polymerase subunit sigma
#=GS A0A1A2PB18/111-162  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. E1319; 
#=GS A0A1A2K6N1/111-162  AC A0A1A2K6N1
#=GS A0A1A2K6N1/111-162  OS Mycobacterium sp. E1214
#=GS A0A1A2K6N1/111-162  DE RNA polymerase subunit sigma
#=GS A0A1A2K6N1/111-162  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. E1214; 
#=GS A0A1A2ZT42/115-167  AC A0A1A2ZT42
#=GS A0A1A2ZT42/115-167  OS Mycobacterium sp. E787
#=GS A0A1A2ZT42/115-167  DE RNA polymerase subunit sigma
#=GS A0A1A2ZT42/115-167  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. E787; 
#=GS A0A1S2WD22/111-163  AC A0A1S2WD22
#=GS A0A1S2WD22/111-163  OS Mycobacterium malmoense
#=GS A0A1S2WD22/111-163  DE RNA polymerase sigma factor SigJ
#=GS A0A1S2WD22/111-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium malmoense; 
#=GS A0A1A3CCM2/111-163  AC A0A1A3CCM2
#=GS A0A1A3CCM2/111-163  OS Mycobacterium sp. 1245805.9
#=GS A0A1A3CCM2/111-163  DE RNA polymerase subunit sigma
#=GS A0A1A3CCM2/111-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 1245805.9; 
#=GS A0A1A0KR28/113-166  AC A0A1A0KR28
#=GS A0A1A0KR28/113-166  OS Mycobacterium sp. 1100029.7
#=GS A0A1A0KR28/113-166  DE RNA polymerase subunit sigma
#=GS A0A1A0KR28/113-166  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. 1100029.7; 
#=GS A0A220YHJ4/119-171  AC A0A220YHJ4
#=GS A0A220YHJ4/119-171  OS Mycobacterium chimaera
#=GS A0A220YHJ4/119-171  DE RNA polymerase sigma factor SigJ
#=GS A0A220YHJ4/119-171  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium chimaera; 
#=GS A0A081I2B6/119-171  AC A0A081I2B6
#=GS A0A081I2B6/119-171  OS Mycobacterium sp. TKK-01-0059
#=GS A0A081I2B6/119-171  DE ECF RNA polymerase sigma factor SigJ
#=GS A0A081I2B6/119-171  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium sp. TKK-01-0059; 
#=GS A0A1X2KJ09/119-171  AC A0A1X2KJ09
#=GS A0A1X2KJ09/119-171  OS Mycobacterium paraintracellulare
#=GS A0A1X2KJ09/119-171  DE RNA polymerase sigma factor SigJ
#=GS A0A1X2KJ09/119-171  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium paraintracellulare; 
#=GS A0A1X2CHR1/112-164  AC A0A1X2CHR1
#=GS A0A1X2CHR1/112-164  OS Mycobacterium saskatchewanense
#=GS A0A1X2CHR1/112-164  DE RNA polymerase subunit sigma
#=GS A0A1X2CHR1/112-164  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium saskatchewanense; 
#=GS A0A1X2AMF5/111-163  AC A0A1X2AMF5
#=GS A0A1X2AMF5/111-163  OS Mycobacterium parmense
#=GS A0A1X2AMF5/111-163  DE RNA polymerase subunit sigma
#=GS A0A1X2AMF5/111-163  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium parmense; 
#=GS A0A1B9CH58/119-171  AC A0A1B9CH58
#=GS A0A1B9CH58/119-171  OS Mycobacterium intracellulare subsp. yongonense
#=GS A0A1B9CH58/119-171  DE RNA polymerase sigma factor SigJ
#=GS A0A1B9CH58/119-171  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; Mycobacterium intracellulare subsp. yongonense; 
#=GS J9WNG3/119-171      AC J9WNG3
#=GS J9WNG3/119-171      OS Mycobacterium intracellulare subsp. intracellulare MTCC 9506
#=GS J9WNG3/119-171      DE RNA polymerase sigma-70 factor
#=GS J9WNG3/119-171      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; Mycobacterium intracellulare subsp. intracellulare; 
#=GS X8AAY3/119-171      AC X8AAY3
#=GS X8AAY3/119-171      OS Mycobacterium intracellulare
#=GS X8AAY3/119-171      DE RNA polymerase sigma factor, sigma-70 family protein
#=GS X8AAY3/119-171      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; 
#=GS S4ZDW9/119-171      AC S4ZDW9
#=GS S4ZDW9/119-171      OS Mycobacterium intracellulare subsp. yongonense 05-1390
#=GS S4ZDW9/119-171      DE RNA polymerase sigma factor SigJ
#=GS S4ZDW9/119-171      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; Mycobacterium intracellulare subsp. yongonense; 
#=GS A5U803/107-160      AC A5U803
#=GS A5U803/107-160      OS Mycobacterium tuberculosis H37Ra
#=GS A5U803/107-160      DE RNA polymerase sigma-70 factor
#=GS A5U803/107-160      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF SQ 23
L0TCG5/107-160              MVVLERLRPDQRVAFVLHDGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQP
A0A1X0DCD4/110-163          MVVLERLSPDQRVAFVLHDGFAVPFAEVAEVLGTNEPAARQLASRARKAVAAEP
X8CA10/119-171              MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
I2AII6/119-171              MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
A0A1A3QP88/111-163          MVVLERLSPDQRVAFVLHDGFAVPFADVAEVLGINEAAARQLASRARKAVAAQ-
A0A1X1UR34/113-166          MVVLERLSPDQRVAFVLHDGFAVPFADVADVLGTTEAAARQLASRARKAVAAEP
A0A0I9Z9R4/113-164          MVVLERLSPDQRVAFVLHDGFAVPFADIADVLGTNEAAARQLASRARKAVAV--
A0A1A2PB18/111-162          MVVLERLTPDQRVAFVLHDGFSMPFAEVAGVLGVNEPAARQLASRARKAVAA--
A0A1A2K6N1/111-162          MVVLERLTPDQRVAFVLHDGFSMPFAEVAGVLGVNEPAARQLASRARKAVAA--
A0A1A2ZT42/115-167          MVVLERLSPDQRVAFVLHDGFAVPFADVAEVLGTSEAAARQLASRARKAVGAQ-
A0A1S2WD22/111-163          MVVLERLSPDQRVAFVLHDGFAVPFAEVAGVLGTSETAARQLASRARKAVTAQ-
A0A1A3CCM2/111-163          MVVLERLSPDQRVAFVLHDGFGVPFAEVAEVLGVSEAAARQLASRARKAVTAE-
A0A1A0KR28/113-166          MVVLERLSPDQRVAFVLHDGFALPFSEVAQVLGTNEAAARQLASRARKAVAAAP
A0A220YHJ4/119-171          MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
A0A081I2B6/119-171          MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
A0A1X2KJ09/119-171          MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
A0A1X2CHR1/112-164          MVVLERLSPDQRVAFVLHDGFVVPFAEVARVLGTTEAAARQLASRARKAVAAQ-
A0A1X2AMF5/111-163          MVVLERLSPDQRVAFVLHDGFAVPFAEVARVLATTETAARQLASRARKAVAAS-
A0A1B9CH58/119-171          MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
J9WNG3/119-171              MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
X8AAY3/119-171              MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
S4ZDW9/119-171              MVVLERLSPDQRVAFVLHDGFDVPFAEVAEALGTSEAAARQLASRARKAVAAE-
A5U803/107-160              MVVLERLRPDQRVAFVLHDGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQP
#=GC scorecons              999999969999999999999479987895698659699999999999997830
#=GC scorecons_70           *********************_*******_****_*****************__
#=GC scorecons_80           *******_*************_*******__**__*_*************_*__
#=GC scorecons_90           *******_*************__***_**__**__*_*************_*__
//