# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000520
#=GF DE RNA polymerase sigma factor sigA-like
#=GF AC 1.10.10.10/FF/000520
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 56.492
#=GS O24629/334-385      AC O24629
#=GS O24629/334-385      OS Arabidopsis thaliana
#=GS O24629/334-385      DE RNA polymerase sigma factor sigA
#=GS O24629/334-385      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O24629/334-385      DR GO; GO:0005515; GO:0006352; GO:0006355; GO:0009507; GO:0016987; GO:0071461; GO:0071482; GO:0080005; GO:2001141; 
#=GS Q0J7T6/352-403      AC Q0J7T6
#=GS Q0J7T6/352-403      OS Oryza sativa Japonica Group
#=GS Q0J7T6/352-403      DE RNA polymerase sigma factor sigA
#=GS Q0J7T6/352-403      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q0J7T6/352-403      DR GO; GO:0006355; GO:0080005; GO:2001141; 
#=GS A0A1U8K5E2/340-391  AC A0A1U8K5E2
#=GS A0A1U8K5E2/340-391  OS Gossypium hirsutum
#=GS A0A1U8K5E2/340-391  DE RNA polymerase sigma factor sigA-like isoform X2
#=GS A0A1U8K5E2/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GS A0A2P6SQ17/342-392  AC A0A2P6SQ17
#=GS A0A2P6SQ17/342-392  OS Rosa chinensis
#=GS A0A2P6SQ17/342-392  DE Putative RNA polymerase sigma-70 like domain, RNA polymerase sigma-B factor
#=GS A0A2P6SQ17/342-392  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Rosales; Rosaceae; Rosoideae; Rosa; Rosa chinensis; 
#=GS A0A3S3P205/321-372  AC A0A3S3P205
#=GS A0A3S3P205/321-372  OS Cinnamomum micranthum f. kanehirae
#=GS A0A3S3P205/321-372  DE RNA polymerase sigma factor sigA-like protein
#=GS A0A3S3P205/321-372  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum; Cinnamomum micranthum f. kanehirae; 
#=GS A0A0D3AS29/316-367  AC A0A0D3AS29
#=GS A0A0D3AS29/316-367  OS Brassica oleracea var. oleracea
#=GS A0A0D3AS29/316-367  DE Uncharacterized protein
#=GS A0A0D3AS29/316-367  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A1R3IXH2/340-391  AC A0A1R3IXH2
#=GS A0A1R3IXH2/340-391  OS Corchorus capsularis
#=GS A0A1R3IXH2/340-391  DE RNA polymerase sigma-70
#=GS A0A1R3IXH2/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus; Corchorus capsularis; 
#=GS V4LCW0/351-402      AC V4LCW0
#=GS V4LCW0/351-402      OS Eutrema salsugineum
#=GS V4LCW0/351-402      DE Uncharacterized protein
#=GS V4LCW0/351-402      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A061F045/340-391  AC A0A061F045
#=GS A0A061F045/340-391  OS Theobroma cacao
#=GS A0A061F045/340-391  DE Sigma factor A isoform 1
#=GS A0A061F045/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; 
#=GS M5X2A7/344-394      AC M5X2A7
#=GS M5X2A7/344-394      OS Prunus persica
#=GS M5X2A7/344-394      DE Uncharacterized protein
#=GS M5X2A7/344-394      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus; Prunus persica; 
#=GS O49935/313-364      AC O49935
#=GS O49935/313-364      OS Sinapis alba
#=GS O49935/313-364      DE Sig1 protein
#=GS O49935/313-364      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Sinapis; Sinapis alba; 
#=GS R0GH75/353-404      AC R0GH75
#=GS R0GH75/353-404      OS Capsella rubella
#=GS R0GH75/353-404      DE Uncharacterized protein
#=GS R0GH75/353-404      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A498JK54/347-397  AC A0A498JK54
#=GS A0A498JK54/347-397  OS Malus domestica
#=GS A0A498JK54/347-397  DE Uncharacterized protein
#=GS A0A498JK54/347-397  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus; Malus domestica; 
#=GS A0A0D2N3P8/331-381  AC A0A0D2N3P8
#=GS A0A0D2N3P8/331-381  OS Gossypium raimondii
#=GS A0A0D2N3P8/331-381  DE Uncharacterized protein
#=GS A0A0D2N3P8/331-381  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; 
#=GS A0A078J1Z3/323-374  AC A0A078J1Z3
#=GS A0A078J1Z3/323-374  OS Brassica napus
#=GS A0A078J1Z3/323-374  DE BnaA02g20170D protein
#=GS A0A078J1Z3/323-374  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS M4CWB6/324-375      AC M4CWB6
#=GS M4CWB6/324-375      OS Brassica rapa subsp. pekinensis
#=GS M4CWB6/324-375      DE Uncharacterized protein
#=GS M4CWB6/324-375      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7KZ14/335-386      AC D7KZ14
#=GS D7KZ14/335-386      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KZ14/335-386      DE RNA polymerase sigma subunit 1
#=GS D7KZ14/335-386      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS K3YH90/331-382      AC K3YH90
#=GS K3YH90/331-382      OS Setaria italica
#=GS K3YH90/331-382      DE Uncharacterized protein
#=GS K3YH90/331-382      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A0D9X4Q9/363-414  AC A0A0D9X4Q9
#=GS A0A0D9X4Q9/363-414  OS Leersia perrieri
#=GS A0A0D9X4Q9/363-414  DE Uncharacterized protein
#=GS A0A0D9X4Q9/363-414  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A0E0QEQ6/352-403  AC A0A0E0QEQ6
#=GS A0A0E0QEQ6/352-403  OS Oryza rufipogon
#=GS A0A0E0QEQ6/352-403  DE Uncharacterized protein
#=GS A0A0E0QEQ6/352-403  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0I7K5/352-403  AC A0A0E0I7K5
#=GS A0A0E0I7K5/352-403  OS Oryza sativa f. spontanea
#=GS A0A0E0I7K5/352-403  DE Uncharacterized protein
#=GS A0A0E0I7K5/352-403  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A0D2TKZ2/340-391  AC A0A0D2TKZ2
#=GS A0A0D2TKZ2/340-391  OS Gossypium raimondii
#=GS A0A0D2TKZ2/340-391  DE Uncharacterized protein
#=GS A0A0D2TKZ2/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; 
#=GS A0A078ISK2/312-363  AC A0A078ISK2
#=GS A0A078ISK2/312-363  OS Brassica napus
#=GS A0A078ISK2/312-363  DE BnaCnng23900D protein
#=GS A0A078ISK2/312-363  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A1U8JSY0/331-381  AC A0A1U8JSY0
#=GS A0A1U8JSY0/331-381  OS Gossypium hirsutum
#=GS A0A1U8JSY0/331-381  DE RNA polymerase sigma factor sigA-like
#=GS A0A1U8JSY0/331-381  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GS A0A1U8I039/340-391  AC A0A1U8I039
#=GS A0A1U8I039/340-391  OS Gossypium hirsutum
#=GS A0A1U8I039/340-391  DE RNA polymerase sigma factor sigA-like
#=GS A0A1U8I039/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GS A0A1U8MKP9/331-381  AC A0A1U8MKP9
#=GS A0A1U8MKP9/331-381  OS Gossypium hirsutum
#=GS A0A1U8MKP9/331-381  DE RNA polymerase sigma factor sigA-like
#=GS A0A1U8MKP9/331-381  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GS A0A0D9X4Q8/350-401  AC A0A0D9X4Q8
#=GS A0A0D9X4Q8/350-401  OS Leersia perrieri
#=GS A0A0D9X4Q8/350-401  DE Uncharacterized protein
#=GS A0A0D9X4Q8/350-401  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A2YRJ0/204-255      AC A2YRJ0
#=GS A2YRJ0/204-255      OS Oryza sativa Indica Group
#=GS A2YRJ0/204-255      DE Uncharacterized protein
#=GS A2YRJ0/204-255      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GF SQ 28
O24629/334-385              LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
Q0J7T6/352-403              FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVN
A0A1U8K5E2/340-391          LRLPTYLHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
A0A2P6SQ17/342-392          LRLPTHLHERLGLIRNAKVRLEEKGITPSIDRIAESLNMSKKKVRNATEAI-
A0A3S3P205/321-372          LRLPAHLHERLCLIRNAKIRLEEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A0D3AS29/316-367          LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A1R3IXH2/340-391          LRLPTHLHERLGLIRNAKNRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
V4LCW0/351-402              LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A061F045/340-391          LRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
M5X2A7/344-394              LRLPTHLHERLGLIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAI-
O49935/313-364              LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
R0GH75/353-404              LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A498JK54/347-397          LRLPTHLHERLGLIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAI-
A0A0D2N3P8/331-381          LRLPTHMHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATKA-D
A0A078J1Z3/323-374          LRLPTHLHERLGLIRNAKLRLQEKGVTPSIDRIAESLNMSQKKVRNATEAVS
M4CWB6/324-375              LRLPTHLHERLGLIRNAKLRLQEKGVTPSIDRIAESLNMSQKKVRNATEAVS
D7KZ14/335-386              LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
K3YH90/331-382              FRLPTYLHERLIAIRSAKYALEDQGIAPTTENIAGSLNISEKKVNNATEAVN
A0A0D9X4Q9/363-414          FRLPTYLHERLIAIRSTKYTLEDQGIAPTIENIAESLNISEKKVLNATEAVN
A0A0E0QEQ6/352-403          FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVN
A0A0E0I7K5/352-403          FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVN
A0A0D2TKZ2/340-391          LRLPTYLHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
A0A078ISK2/312-363          LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A1U8JSY0/331-381          LRLPTHMHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATKA-D
A0A1U8I039/340-391          LRLPTYLHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
A0A1U8MKP9/331-381          LRLPTHMHERLGLIRNAKYRLEEKGITPTIDRIAESLNMSQKKVRNATEA-D
A0A0D9X4Q8/350-401          FRLPTYLHERLIAIRSTKYTLEDQGIAPTIENIAESLNISEKKVLNATEAVN
A2YRJ0/204-255              FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVN
#=GC scorecons              6999878999945995894597769869687699699969699949998964
#=GC scorecons_70           ***********__**_**__***********_********_***_******_
#=GC scorecons_80           _****_*****__**_**__*_*_**_*_**_**_***_*_***_*****__
#=GC scorecons_90           _****_*****__**__*__*___**_*_*__**_***_*_***_*****__
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