# STOCKHOLM 1.0 #=GF ID 1.10.10.10/FF/000514 #=GF DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial #=GF AC 1.10.10.10/FF/000514 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 43.058 #=GS Q9ZNX9/440-517 AC Q9ZNX9 #=GS Q9ZNX9/440-517 OS Arabidopsis thaliana #=GS Q9ZNX9/440-517 DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial #=GS Q9ZNX9/440-517 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9ZNX9/440-517 DR GO; GO:0005515; GO:0005739; GO:0006352; GO:0009507; GO:0009553; GO:0009658; GO:0010114; GO:0010207; GO:0010218; GO:0016987; GO:0045893; GO:0071472; GO:0071483; GO:2001141; #=GS Q84JN3/423-500 AC Q84JN3 #=GS Q84JN3/423-500 OS Oryza sativa Japonica Group #=GS Q84JN3/423-500 DE Os05g0586600 protein #=GS Q84JN3/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q84JN3/423-500 DR GO; GO:0003899; GO:0009536; GO:0016987; #=GS A0A178URC9/440-517 AC A0A178URC9 #=GS A0A178URC9/440-517 OS Arabidopsis thaliana #=GS A0A178URC9/440-517 DE SIGE #=GS A0A178URC9/440-517 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS K7LXZ2/435-512 AC K7LXZ2 #=GS K7LXZ2/435-512 OS Glycine max #=GS K7LXZ2/435-512 DE Uncharacterized protein #=GS K7LXZ2/435-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A3B6A3M2/417-494 AC A0A3B6A3M2 #=GS A0A3B6A3M2/417-494 OS Triticum aestivum #=GS A0A3B6A3M2/417-494 DE Uncharacterized protein #=GS A0A3B6A3M2/417-494 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS A0A3L6R6J0/412-493 AC A0A3L6R6J0 #=GS A0A3L6R6J0/412-493 OS Panicum miliaceum #=GS A0A3L6R6J0/412-493 DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial #=GS A0A3L6R6J0/412-493 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS V7CVP2/434-511 AC V7CVP2 #=GS V7CVP2/434-511 OS Phaseolus vulgaris #=GS V7CVP2/434-511 DE Uncharacterized protein #=GS V7CVP2/434-511 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus; Phaseolus vulgaris; #=GS A0A1S3UGK8/434-511 AC A0A1S3UGK8 #=GS A0A1S3UGK8/434-511 OS Vigna radiata var. radiata #=GS A0A1S3UGK8/434-511 DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 #=GS A0A1S3UGK8/434-511 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna radiata; Vigna radiata var. radiata; #=GS A0A287GS32/274-351 AC A0A287GS32 #=GS A0A287GS32/274-351 OS Hordeum vulgare subsp. vulgare #=GS A0A287GS32/274-351 DE Uncharacterized protein #=GS A0A287GS32/274-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Hordeinae; Hordeum; Hordeum vulgare; Hordeum vulgare subsp. vulgare; #=GS A0A0B2QT32/435-512 AC A0A0B2QT32 #=GS A0A0B2QT32/435-512 OS Glycine soja #=GS A0A0B2QT32/435-512 DE RNA polymerase sigma factor rpoD #=GS A0A0B2QT32/435-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A453A230/417-494 AC A0A453A230 #=GS A0A453A230/417-494 OS Aegilops tauschii subsp. strangulata #=GS A0A453A230/417-494 DE Uncharacterized protein #=GS A0A453A230/417-494 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; #=GS A0A0D9WKC7/414-491 AC A0A0D9WKC7 #=GS A0A0D9WKC7/414-491 OS Leersia perrieri #=GS A0A0D9WKC7/414-491 DE Uncharacterized protein #=GS A0A0D9WKC7/414-491 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A0A446JE99/417-494 AC A0A446JE99 #=GS A0A446JE99/417-494 OS Triticum turgidum subsp. durum #=GS A0A446JE99/417-494 DE Uncharacterized protein #=GS A0A446JE99/417-494 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum turgidum; Triticum turgidum subsp. durum; #=GS A0A0E0L6C4/420-497 AC A0A0E0L6C4 #=GS A0A0E0L6C4/420-497 OS Oryza punctata #=GS A0A0E0L6C4/420-497 DE Uncharacterized protein #=GS A0A0E0L6C4/420-497 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; #=GS A0A0E0PRV9/423-500 AC A0A0E0PRV9 #=GS A0A0E0PRV9/423-500 OS Oryza rufipogon #=GS A0A0E0PRV9/423-500 DE Uncharacterized protein #=GS A0A0E0PRV9/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS I1PYE3/423-500 AC I1PYE3 #=GS I1PYE3/423-500 OS Oryza glaberrima #=GS I1PYE3/423-500 DE Uncharacterized protein #=GS I1PYE3/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A0E0A3F4/423-500 AC A0A0E0A3F4 #=GS A0A0E0A3F4/423-500 OS Oryza glumipatula #=GS A0A0E0A3F4/423-500 DE Uncharacterized protein #=GS A0A0E0A3F4/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS J3MA78/660-737 AC J3MA78 #=GS J3MA78/660-737 OS Oryza brachyantha #=GS J3MA78/660-737 DE Uncharacterized protein #=GS J3MA78/660-737 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; #=GS M8A035/341-418 AC M8A035 #=GS M8A035/341-418 OS Triticum urartu #=GS M8A035/341-418 DE RNA polymerase sigma factor rpoD #=GS M8A035/341-418 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum urartu; #=GS A0A0D3GBE7/423-500 AC A0A0D3GBE7 #=GS A0A0D3GBE7/423-500 OS Oryza barthii #=GS A0A0D3GBE7/423-500 DE Uncharacterized protein #=GS A0A0D3GBE7/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0HJ42/423-500 AC A0A0E0HJ42 #=GS A0A0E0HJ42/423-500 OS Oryza sativa f. spontanea #=GS A0A0E0HJ42/423-500 DE Uncharacterized protein #=GS A0A0E0HJ42/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS A0A453A247/307-384 AC A0A453A247 #=GS A0A453A247/307-384 OS Aegilops tauschii subsp. strangulata #=GS A0A453A247/307-384 DE Uncharacterized protein #=GS A0A453A247/307-384 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; #=GS A0A3B5Y7K5/417-494 AC A0A3B5Y7K5 #=GS A0A3B5Y7K5/417-494 OS Triticum aestivum #=GS A0A3B5Y7K5/417-494 DE Uncharacterized protein #=GS A0A3B5Y7K5/417-494 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS A2Y810/423-500 AC A2Y810 #=GS A2Y810/423-500 OS Oryza sativa Indica Group #=GS A2Y810/423-500 DE Uncharacterized protein #=GS A2Y810/423-500 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A3L6T1H4/413-493 AC A0A3L6T1H4 #=GS A0A3L6T1H4/413-493 OS Panicum miliaceum #=GS A0A3L6T1H4/413-493 DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial #=GS A0A3L6T1H4/413-493 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS A0A3B5Z6C4/415-492 AC A0A3B5Z6C4 #=GS A0A3B5Z6C4/415-492 OS Triticum aestivum #=GS A0A3B5Z6C4/415-492 DE Uncharacterized protein #=GS A0A3B5Z6C4/415-492 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; #=GS K7LXZ5/411-488 AC K7LXZ5 #=GS K7LXZ5/411-488 OS Glycine max #=GS K7LXZ5/411-488 DE Uncharacterized protein #=GS K7LXZ5/411-488 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A445HAP9/411-488 AC A0A445HAP9 #=GS A0A445HAP9/411-488 OS Glycine soja #=GS A0A445HAP9/411-488 DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform D #=GS A0A445HAP9/411-488 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS I0IJN9/435-512 AC I0IJN9 #=GS I0IJN9/435-512 OS Glycine max #=GS I0IJN9/435-512 DE Sigma-like factor 5A #=GS I0IJN9/435-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 29 Q9ZNX9/440-517 -RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI----V Q84JN3/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A178URC9/440-517 -RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI----V K7LXZ2/435-512 -RQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV----V A0A3B6A3M2/417-494 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A3L6R6J0/412-493 -KHNTLLRLAIDDLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVDYLRSAHYRLQS V7CVP2/434-511 -RQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYV----V A0A1S3UGK8/434-511 -RQVAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEISGNLNISREMVRKHEVKALMKLKHPARLDYLRRYA----V A0A287GS32/274-351 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A0B2QT32/435-512 -RQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV----V A0A453A230/417-494 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A0D9WKC7/414-491 NKHNTLLRLAIDDLLDSLKPKENLVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A446JE99/417-494 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A0E0L6C4/420-497 SKHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A0E0PRV9/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- I1PYE3/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A0E0A3F4/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- J3MA78/660-737 SKHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- M8A035/341-418 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A0D3GBE7/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A0E0HJ42/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A453A247/307-384 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A0A3B5Y7K5/417-494 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- A2Y810/423-500 SSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM----- A0A3L6T1H4/413-493 -KHNTLLRLAIDDLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVDYLRRMTQE-RS A0A3B5Z6C4/415-492 HKHNRLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGRRTLSEIAGNLRISREMVRKYELKALMKLKHPTRVDYLRRYM----- K7LXZ5/411-488 -RQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV----V A0A445HAP9/411-488 -RQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV----V I0IJN9/435-512 -RQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYV----V #=GC scorecons 15645699996996999999998698999799997959996998999699997999796999999997696799977500001 #=GC scorecons_70 __*__*******************************_****************************************______ #=GC scorecons_80 ______****_**_*********_************_***_******_**********_*********_*_******______ #=GC scorecons_90 ______****_**_*********_*****_****_*_***_******_****_***_*_********__*__***________ //