# STOCKHOLM 1.0
#=GF ID 4.10.280.10/FF/1801
#=GF DE Clockwork orange, isoform A
#=GF AC 4.10.280.10/FF/1801
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 10.555
#=GS Q9VGZ5/65-122       AC Q9VGZ5
#=GS Q9VGZ5/65-122       OS Drosophila melanogaster
#=GS Q9VGZ5/65-122       DE Transcription factor cwo
#=GS Q9VGZ5/65-122       DR GENE3D; f96d043f9ac82cbe4e7ebeddc9721567/65-122; 
#=GS Q9VGZ5/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VGZ5/65-122       DR GO; GO:0000122; GO:0003700; GO:0005634; GO:0006355; GO:0032922; GO:0042752; GO:0048813; 
#=GS B4G699/163-219      AC B4G699
#=GS B4G699/163-219      OS Drosophila persimilis
#=GS B4G699/163-219      DE GL23696
#=GS B4G699/163-219      DR GENE3D; 1b1772cca62f01fe12e861523857ebd8/163-219; 
#=GS B4G699/163-219      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS W8BMN7/103-159      AC W8BMN7
#=GS W8BMN7/103-159      OS Ceratitis capitata
#=GS W8BMN7/103-159      DE Hairy/enhancer-of-split related with YRPW motif protein
#=GS W8BMN7/103-159      DR GENE3D; 2cfba7173a8d43631e8263d7b4b7e990/103-159; 
#=GS W8BMN7/103-159      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Ceratitidini; Ceratitis; Ceratitis; Ceratitis capitata; 
#=GS B4JIN1/65-121       AC B4JIN1
#=GS B4JIN1/65-121       OS Drosophila grimshawi
#=GS B4JIN1/65-121       DE GH19128
#=GS B4JIN1/65-121       DR GENE3D; 2e25ee8bb632b2ed807a52c0e89062ba/65-121; 
#=GS B4JIN1/65-121       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; grimshawi group; grimshawi subgroup; Drosophila grimshawi; 
#=GS A0A0R3NFZ3/34-90    AC A0A0R3NFZ3
#=GS A0A0R3NFZ3/34-90    OS Drosophila pseudoobscura pseudoobscura
#=GS A0A0R3NFZ3/34-90    DE Uncharacterized protein, isoform B
#=GS A0A0R3NFZ3/34-90    DR GENE3D; 356275317e2985437ab381c64963101d/34-90; 
#=GS A0A0R3NFZ3/34-90    DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B4HIT8/65-122       AC B4HIT8
#=GS B4HIT8/65-122       OS Drosophila sechellia
#=GS B4HIT8/65-122       DE GM23880
#=GS B4HIT8/65-122       DR GENE3D; 35e260878e4656c865c204aa3b9fe5ff/65-122; 
#=GS B4HIT8/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4LW47/65-121       AC B4LW47
#=GS B4LW47/65-121       OS Drosophila virilis
#=GS B4LW47/65-121       DE Uncharacterized protein, isoform A
#=GS B4LW47/65-121       DR GENE3D; 4466c501d1bb7a40bbc5f58a79209eeb/65-121; 
#=GS B4LW47/65-121       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; 
#=GS Q29AL7/65-121       AC Q29AL7
#=GS Q29AL7/65-121       OS Drosophila pseudoobscura pseudoobscura
#=GS Q29AL7/65-121       DE Uncharacterized protein, isoform A
#=GS Q29AL7/65-121       DR GENE3D; 5a1b9b9d30699ae0c9edc2b21e8b27b1/65-121; 
#=GS Q29AL7/65-121       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B4K528/65-122       AC B4K528
#=GS B4K528/65-122       OS Drosophila mojavensis
#=GS B4K528/65-122       DE Uncharacterized protein, isoform A
#=GS B4K528/65-122       DR GENE3D; 901957bb210996fd97873841b3699066/65-122; 
#=GS B4K528/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; 
#=GS B3P1N6/65-122       AC B3P1N6
#=GS B3P1N6/65-122       OS Drosophila erecta
#=GS B3P1N6/65-122       DE GG17540
#=GS B3P1N6/65-122       DR GENE3D; 91dd47ade01f4b6a9a990bbd89494f65/65-122; 
#=GS B3P1N6/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS B4QV84/65-122       AC B4QV84
#=GS B4QV84/65-122       OS Drosophila simulans
#=GS B4QV84/65-122       DE GD18691
#=GS B4QV84/65-122       DR GENE3D; 9d7bb42187c6994cb3b13b1519881a0c/65-122; 
#=GS B4QV84/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A1I8P4Z1/65-122   AC A0A1I8P4Z1
#=GS A0A1I8P4Z1/65-122   OS Stomoxys calcitrans
#=GS A0A1I8P4Z1/65-122   DE Uncharacterized protein
#=GS A0A1I8P4Z1/65-122   DR GENE3D; a13212c987a75df35450d79390f47deb/65-122; 
#=GS A0A1I8P4Z1/65-122   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Muscinae; Stomoxyini; Stomoxys; Stomoxys calcitrans; 
#=GS A0A1I8M4U0/66-123   AC A0A1I8M4U0
#=GS A0A1I8M4U0/66-123   OS Musca domestica
#=GS A0A1I8M4U0/66-123   DE Uncharacterized protein
#=GS A0A1I8M4U0/66-123   DR GENE3D; a4598c4355f8a0037ce39cb18793ae26/66-123; 
#=GS A0A1I8M4U0/66-123   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Muscinae; Muscini; Musca; Musca; Musca domestica; 
#=GS B3LVZ9/65-122       AC B3LVZ9
#=GS B3LVZ9/65-122       OS Drosophila ananassae
#=GS B3LVZ9/65-122       DE Uncharacterized protein, isoform A
#=GS B3LVZ9/65-122       DR GENE3D; ad643b0f9e1651ae1bb5d91573c8a7c1/65-122; 
#=GS B3LVZ9/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A0Q9WDW3/9-69     AC A0A0Q9WDW3
#=GS A0A0Q9WDW3/9-69     OS Drosophila virilis
#=GS A0A0Q9WDW3/9-69     DE Uncharacterized protein, isoform C
#=GS A0A0Q9WDW3/9-69     DR GENE3D; b23be33f78ab25f6fe5a6a4f437bf899/9-69; 
#=GS A0A0Q9WDW3/9-69     DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; 
#=GS A0A0K8V7K8/65-122   AC A0A0K8V7K8
#=GS A0A0K8V7K8/65-122   OS Bactrocera latifrons
#=GS A0A0K8V7K8/65-122   DE Hairy/enhancer-of-split related with YRPW motif protein
#=GS A0A0K8V7K8/65-122   DR GENE3D; b666f3d8bc6deca3648190d4860c2861/65-122; 
#=GS A0A0K8V7K8/65-122   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Dacinae; Dacini; Bactrocera; Bactrocera; Bactrocera latifrons; 
#=GS B4PKP6/65-122       AC B4PKP6
#=GS B4PKP6/65-122       OS Drosophila yakuba
#=GS B4PKP6/65-122       DE Uncharacterized protein, isoform A
#=GS B4PKP6/65-122       DR GENE3D; b801e9331dbc3b90a04a7599d2093656/65-122; 
#=GS B4PKP6/65-122       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS A0A1B0BMJ7/101-157  AC A0A1B0BMJ7
#=GS A0A1B0BMJ7/101-157  OS Glossina palpalis gambiensis
#=GS A0A1B0BMJ7/101-157  DE Uncharacterized protein
#=GS A0A1B0BMJ7/101-157  DR GENE3D; db75fafcf2a68f17074abffd43c833bc/101-157; 
#=GS A0A1B0BMJ7/101-157  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Hippoboscoidea; Glossinidae; Glossina; Nemorhina; Glossina palpalis; Glossina palpalis gambiensis; 
#=GS B4N8X1/65-121       AC B4N8X1
#=GS B4N8X1/65-121       OS Drosophila willistoni
#=GS B4N8X1/65-121       DE Uncharacterized protein, isoform B
#=GS B4N8X1/65-121       DR GENE3D; f0ec9529a5d61a1dda508297f831f2a2/65-121; 
#=GS B4N8X1/65-121       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; 
#=GF TC 147.3 6.1E-47
#=GF SQ 19
Q9VGZ5/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
B4G699/163-219              -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
W8BMN7/103-159              -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
B4JIN1/65-121               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
A0A0R3NFZ3/34-90            -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
B4HIT8/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
B4LW47/65-121               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
Q29AL7/65-121               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
B4K528/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEIL
B3P1N6/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
B4QV84/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
A0A1I8P4Z1/65-122           -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECM
A0A1I8M4U0/66-123           -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECM
B3LVZ9/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
A0A0Q9WDW3/9-69             PQQDPLSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSE--
A0A0K8V7K8/65-122           -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECI
B4PKP6/65-122               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQ
A0A1B0BMJ7/101-157          -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
B4N8X1/65-121               -----LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSEC-
#=GC scorecons              000009999999999999999999999999999999999999999999999999999999940
#=GC scorecons_70           _____********************************************************__
#=GC scorecons_80           _____********************************************************__
#=GC scorecons_90           _____********************************************************__
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