# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/634388
#=GF DE Replication factor C small subunit
#=GF AC 3.40.50.300/FF/634388
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 43.997
#=GS Q5JHP2/13-70     AC Q5JHP2
#=GS Q5JHP2/13-70     OS Thermococcus kodakarensis KOD1
#=GS Q5JHP2/13-70     DE Replication factor C small subunit
#=GS Q5JHP2/13-70     DR GENE3D; 52afca2660f4847eec88bc341a63a523/13-70; 
#=GS Q5JHP2/13-70     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS Q58817/3-56      AC Q58817
#=GS Q58817/3-56      OS Methanocaldococcus jannaschii DSM 2661
#=GS Q58817/3-56      DE Replication factor C small subunit
#=GS Q58817/3-56      DR GENE3D; a36ccaa8c21474b89294fbda087d7d6e/3-56; 
#=GS Q58817/3-56      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS O57852/15-64     AC O57852
#=GS O57852/15-64     OS Pyrococcus horikoshii OT3
#=GS O57852/15-64     DE Replication factor C small subunit
#=GS O57852/15-64     DR GENE3D; a64a5c902648433b2d075697b61049fc/15-64; 
#=GS O57852/15-64     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii; 
#=GS H3ZM44/14-65     AC H3ZM44
#=GS H3ZM44/14-65     OS Thermococcus litoralis DSM 5473
#=GS H3ZM44/14-65     DE Pab RFC-2 intein
#=GS H3ZM44/14-65     DR GENE3D; 33908f160e62bc2a0ffd93e4d79ec1ca/14-65; 
#=GS H3ZM44/14-65     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus litoralis; 
#=GS Q9V2G4/15-69     AC Q9V2G4
#=GS Q9V2G4/15-69     OS Pyrococcus abyssi GE5
#=GS Q9V2G4/15-69     DE Replication factor C small subunit
#=GS Q9V2G4/15-69     DR GENE3D; 7924198a8657a42cd48977f21d5cd98e/15-69; 
#=GS Q9V2G4/15-69     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus abyssi; 
#=GS Q8U4J3/13-62     AC Q8U4J3
#=GS Q8U4J3/13-62     OS Pyrococcus furiosus DSM 3638
#=GS Q8U4J3/13-62     DE Replication factor C small subunit
#=GS Q8U4J3/13-62     DR GENE3D; bf3b336949554ddcee975dbc74e20a28/13-62; 
#=GS Q8U4J3/13-62     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus furiosus; 
#=GS I6U8Q5/13-62     AC I6U8Q5
#=GS I6U8Q5/13-62     OS Pyrococcus furiosus COM1
#=GS I6U8Q5/13-62     DE Replication factor C small subunit
#=GS I6U8Q5/13-62     DR GENE3D; bf3b336949554ddcee975dbc74e20a28/13-62; 
#=GS I6U8Q5/13-62     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus furiosus; 
#=GS G0HMD2/2-64      AC G0HMD2
#=GS G0HMD2/2-64      OS Thermococcus sp. 4557
#=GS G0HMD2/2-64      DE Replication factor C small subunit
#=GS G0HMD2/2-64      DR GENE3D; 146473f5d81b9bb68a59a0ef1f5fdd36/2-64; 
#=GS G0HMD2/2-64      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus sp. 4557; 
#=GS I3ZUX7/13-67     AC I3ZUX7
#=GS I3ZUX7/13-67     OS Thermococcus cleftensis
#=GS I3ZUX7/13-67     DE Replication factor C small subunit
#=GS I3ZUX7/13-67     DR GENE3D; 29a6d86887325698b8408f3f73f57ef9/13-67; 
#=GS I3ZUX7/13-67     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus cleftensis; 
#=GS F4HLD2/12-119    AC F4HLD2
#=GS F4HLD2/12-119    OS Pyrococcus sp. NA2
#=GS F4HLD2/12-119    DE Uncharacterized protein
#=GS F4HLD2/12-119    DR GENE3D; 3eefbc14c7a5af782416ba6f690464f7/12-119; 
#=GS F4HLD2/12-119    DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus sp. NA2; 
#=GS I3RC89/1-64      AC I3RC89
#=GS I3RC89/1-64      OS Pyrococcus sp. ST04
#=GS I3RC89/1-64      DE Replication factor C small subunit
#=GS I3RC89/1-64      DR GENE3D; 6c2ce47eeb75622ff43ad413294175c5/1-64; 
#=GS I3RC89/1-64      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus sp. ST04; 
#=GS D3S8F9/1-52      AC D3S8F9
#=GS D3S8F9/1-52      OS Methanocaldococcus sp. FS406-22
#=GS D3S8F9/1-52      DE Transcriptional regulator, XRE family
#=GS D3S8F9/1-52      DR GENE3D; 8f58de0c2c88bdba6554132f0a6ad694/1-52; 
#=GS D3S8F9/1-52      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus sp. FS406-22; 
#=GS C9RG91/1-52      AC C9RG91
#=GS C9RG91/1-52      OS Methanocaldococcus vulcanius M7
#=GS C9RG91/1-52      DE Replication factor C
#=GS C9RG91/1-52      DR GENE3D; d39abea56fe300e52879c9697c5f77a4/1-52; 
#=GS C9RG91/1-52      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus vulcanius; 
#=GS A0A097QRF1/1-63  AC A0A097QRF1
#=GS A0A097QRF1/1-63  OS Thermococcus eurythermalis
#=GS A0A097QRF1/1-63  DE Pab RFC-2 intein
#=GS A0A097QRF1/1-63  DR GENE3D; d3afb4a8435e675b08f5cc0c2b60f5c6/1-63; 
#=GS A0A097QRF1/1-63  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus eurythermalis; 
#=GS H1KYI5/1-52      AC H1KYI5
#=GS H1KYI5/1-52      OS Methanotorris formicicus Mc-S-70
#=GS H1KYI5/1-52      DE Transcriptional regulator, XRE family
#=GS H1KYI5/1-52      DR GENE3D; e4d63570c51eba7979ceb6f624e99b83/1-52; 
#=GS H1KYI5/1-52      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris; Methanotorris formicicus; 
#=GF TC 127.0 4.8E-41
#=GF SQ 15
Q5JHP2/13-70             ------------KPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLTGDA---------------------------------KVIAN-----------------
Q58817/3-56              --------IIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT----------------------------------------------------------
O57852/15-64             ------------KPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT----------------------------------------------------------
H3ZM44/14-65             ----------LEKPWVEKYRPERLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT----------------------------------------------------------
Q9V2G4/15-69             ------------KPWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLTGDA---------------------------------KV--------------------
Q8U4J3/13-62             ------------KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT----------------------------------------------------------
I6U8Q5/13-62             ------------KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT----------------------------------------------------------
G0HMD2/2-64              -PDEVQEVRILEKPWVEKYRPARLDDIVGQAHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLTGD--------------------------------------------------------
I3ZUX7/13-67             ------------KPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLTGDA---------------------------------KV--------------------
F4HLD2/12-119            ------------KPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASVSKNTPILVRINERIVRTTFAELDRLYFDESDGDV
I3RC89/1-64              MGEEVREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLTGE--------------------------------------------------------
D3S8F9/1-52              ----------MDKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT----------------------------------------------------------
C9RG91/1-52              ----------MEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT----------------------------------------------------------
A0A097QRF1/1-63          MTEEIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGKCLTG---------------------------------------------------------
H1KYI5/1-52              ----------MEKPWVEKYRPKTLDEVVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT----------------------------------------------------------
#=GC scorecons           000000000011999999999569878998669999996976669999999699999997771000000000000000000000000000000000000000000000000000000000
#=GC scorecons_70        ____________*********__***************************************__________________________________________________________
#=GC scorecons_80        ____________*********__*******__******_*____*******_*******__*__________________________________________________________
#=GC scorecons_90        ____________*********__**_****__******_*____*******_*******_____________________________________________________________
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