# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/633676
#=GF DE MutS ortholog 4 protein
#=GF AC 3.40.50.300/FF/633676
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 68.470
#=GS Q19272/591-859       AC Q19272
#=GS Q19272/591-859       OS Caenorhabditis elegans
#=GS Q19272/591-859       DE MutS protein homolog 5
#=GS Q19272/591-859       DR GENE3D; 0d54260f208c58aced9c383ed6692f2f/591-859; 
#=GS Q19272/591-859       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q19272/591-859       DR GO; GO:0005515; GO:0005634; GO:0007131; GO:0045143; GO:0051026; 
#=GS A0A061AKP2/145-413   AC A0A061AKP2
#=GS A0A061AKP2/145-413   OS Caenorhabditis elegans
#=GS A0A061AKP2/145-413   DE MSH (MutS Homolog) family
#=GS A0A061AKP2/145-413   DR GENE3D; 960587bb5ab6cbf176bd986b9980a69a/145-413; 
#=GS A0A061AKP2/145-413   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A7UVX1/955-1240      AC A7UVX1
#=GS A7UVX1/955-1240      OS Neurospora crassa OR74A
#=GS A7UVX1/955-1240      DE MutS ortholog 4 protein
#=GS A7UVX1/955-1240      DR GENE3D; dd23f6c7f1912caac468ea50c94394b3/955-1240; 
#=GS A7UVX1/955-1240      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; 
#=GS E3M3L2/586-855       AC E3M3L2
#=GS E3M3L2/586-855       OS Caenorhabditis remanei
#=GS E3M3L2/586-855       DE CRE-MSH-5 protein
#=GS E3M3L2/586-855       DR GENE3D; 6a7436fd68b2283cfe122306813d9e10/586-855; 
#=GS E3M3L2/586-855       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS H2WQL6/590-858       AC H2WQL6
#=GS H2WQL6/590-858       OS Caenorhabditis japonica
#=GS H2WQL6/590-858       DE Uncharacterized protein
#=GS H2WQL6/590-858       DR GENE3D; b96144cb249a13e441c3555a1a93f586/590-858; 
#=GS H2WQL6/590-858       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A0B0DSJ1/955-1240  AC A0A0B0DSJ1
#=GS A0A0B0DSJ1/955-1240  OS Neurospora crassa
#=GS A0A0B0DSJ1/955-1240  DE Uncharacterized protein
#=GS A0A0B0DSJ1/955-1240  DR GENE3D; dd23f6c7f1912caac468ea50c94394b3/955-1240; 
#=GS A0A0B0DSJ1/955-1240  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; 
#=GS F8MZC2/832-1051      AC F8MZC2
#=GS F8MZC2/832-1051      OS Neurospora tetrasperma FGSC 2508
#=GS F8MZC2/832-1051      DE Uncharacterized protein
#=GS F8MZC2/832-1051      DR GENE3D; 3d7419877d24728ee9580c46605bf03c/832-1051; 
#=GS F8MZC2/832-1051      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; 
#=GS Q6MGL0/836-1071      AC Q6MGL0
#=GS Q6MGL0/836-1071      OS Neurospora crassa
#=GS Q6MGL0/836-1071      DE Related to meiosis-specific MutS homolog
#=GS Q6MGL0/836-1071      DR GENE3D; 614bc0a72f45a7d14a53cc97cb5760cf/836-1071; 
#=GS Q6MGL0/836-1071      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; 
#=GS A0A1I7TDT7/369-637   AC A0A1I7TDT7
#=GS A0A1I7TDT7/369-637   OS Caenorhabditis tropicalis
#=GS A0A1I7TDT7/369-637   DE Uncharacterized protein
#=GS A0A1I7TDT7/369-637   DR GENE3D; cf06a37e30c27120d555d047651ec98f/369-637; 
#=GS A0A1I7TDT7/369-637   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS G4U8U2/955-1239      AC G4U8U2
#=GS G4U8U2/955-1239      OS Neurospora tetrasperma FGSC 2509
#=GS G4U8U2/955-1239      DE Uncharacterized protein
#=GS G4U8U2/955-1239      DR GENE3D; bc969ac529480741bc3da2f564a4dc96/955-1239; 
#=GS G4U8U2/955-1239      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; 
#=GF TC 48.0 4.0E-16
#=GF SQ 10
Q19272/591-859               WNCPALVDEPVIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALR----------KATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEG---------IPPPVIGRACRIYKALKAGTLLKEIKAEV-SNDNEKQLVEDMDVVLAD------ED---------------
A0A061AKP2/145-413           WNCPALVDEPVIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALR----------KATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEG---------IPPPVIGRACRIYKALKAGTLLKEIKAEV-SNDNEKQLVEDMDVVLAD------ED---------------
A7UVX1/955-1240              -VRPMITDSMVIKQAR--HPI-VEARTDQYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFGVEMRETNAILR----------QATAQSMIIMDELGRGTSPKDGQALAIAIVEKLIKMK----PRVFFATHFTRIPQLL---NKIYPRDVLNVHFQ--GQSQAVGQITQITLPHTLAGGPVQNEDYGIELARCVLPGSIVNTAEEVLKALREGQKPQQSGEKG-REARQRKLTLALPVVMKQALDSTMDDAALGSYLRRLQTEFT
E3M3L2/586-855               WNCPTLVDESVIEALELYHPISVLVVKKNFVPNQVSSGRNGVKASIITGPNACGKSVYMKSIGILAFLAHIGSFVPARHATVGVVDRIVTRMFTIDSVLDGMSTFAKDVEQVALALR----------KGTGNSLVIIDEFGKGTMTEVGLSLLASCMTYWMKKGAQRCPHIFLSSHFHALPKHIPNDNNIAEFLTFTVHREPGGKIRYLFRLTPGMVDCSFAMAVAKEEG---------IPTSILGRACRIYKALKSGTPLKEVRAEV-SNENDEERVAEMDVVLED------ESG--------------
H2WQL6/590-858               WNCPSLVDEPVIEAAELFHPISALLVKKQAIPNPVCSGRNGIKVSVITGPNACGKSVYMKSIGIMAFLAHIGSFVPARHAKVGIVDRIVTRMFTVDSVLDGISTFAKDVEQVALALR----------KATCRSLVIIDEFGKGTMTEVGLSLLSSCLNHWMRKGIQGCPHVFLASHFHALPRYMLLETNLATFLTFTVIREAGGKIKYLFQLVPGLVDCSFAMAVAKEQG---------ISTSVIGRACRIYKALKSGSLLKEVRAEV-TNDNEEQQISDMDIVLSD------QD---------------
A0A0B0DSJ1/955-1240          -VRPMITDSMVIKQAR--HPI-VEARTDQYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFGVEMRETNAILR----------QATAQSMIIMDELGRGTSPKDGQALAIAIVEKLIKMK----PRVFFATHFTRIPQLL---NKIYPRDVLNVHFQ--GQSQAVGQITQITLPHTLAGGPVQNEDYGIELARCVLPGSIVNTAEEVLKALREGQKPQQSGEKG-REARQRKLTLALPVVMKQALDSTMDDAALGSYLRRLQTEFT
F8MZC2/832-1051              YVRPMITDSMVIKQAR--HPI-VEARTNHYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDKVFARVSTDDAPENNLGTFGVEMRETNVILR----------QATAQSMIIMDELGRGTSPKDGQALAIAIIEKLIKMK----PRVFFATHFTRI-------------------------------------------RPVQNEDYGIELARCVLPASIVDNAEEVLKALREGQRPPQSGEKG-REARQRKLTLAL-----------------------------
Q6MGL0/836-1071              YVRPMITDSMVIKQAR--HPI-VEARTDQYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFGVEMRETNAILRYPFLPYNMSEQATAQSMIIMDELGRGTSPKDGQALAIAIVEKLIKMK----PRVFFATHFTRI-------------------------------------------RPVQNEDYGIELARCVLPGSIVNTAEEVLKALREGQKPQQSGEKG-REARQRKLTLALPVVMKQ-----------------------
A0A1I7TDT7/369-637           WNCPTLVDEPIIEALELYHPISVLVVKKNFVPNEVSSGRNGIKASIITGPNACGKSVYMKSIGILAFLTHIGSFVPARHAKVGLVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALR----------KATGSSLVIIDEFGKGTMTEVGLSLLASCMTYWMQKGPTHCPHIFLSSHFHSLPKFIPLDLNIATFLTFTVLREPGGQIKYLFRLTPGTVDCSFAMAVAKEEG---------IPMPIIARACRIYKAIKAGTPLKEVRAEVKTTDDEDQMVFDMDIVLAD------D----------------
G4U8U2/955-1239              -VRPIITDSMVIKQAR--HPI-VEARANHYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFGVEMRETNVILR----------QATAQSMIIMDELGRGTSPKDGQALAIAIIEKLIKMK----PRVFFATHFTRIPQLL---NKIYPRDVLNVHFE--GQSQAVGQITQITLPHTLAGGPVQNEDYGIELARCVLPGSIVDHAEEVLKALREGQRPPQSGEKG-REARQRKLTLALPVVMKQALDSTMDDAALGSYLRRLQTEF-
#=GC scorecons               2559465954896555119991745445468694959955647457999595699957679766645666699999965947675987569659496546566996476565545990000000000679549679699697995664956955645545654500119679666995465223111234222233352241153332323343223233352456668622222222267367644945759987494354645565045555555535635653400000033000000000000000
#=GC scorecons_70            ___*_*_*__**______***_*_______*_*_*_**____*__****_*__***_*****_*___***********_*_*_*_***_***_*_*___*___**__**_*____**__________***__************____*__*________*_______*****__**__*______________________________________________*_*__________**_***__*__*_****_*____*_________________*__*__________________________
#=GC scorecons_80            ___*___*__**______***_*_______*_*_*_**________***_*__***_*__*__________******__*_*_*_**___*__*_*_______**__________**___________**__*__*_**_*_**____*__*________________*__*___**___________________________________________________*___________*__*___*____***__*____________________________________________________
#=GC scorecons_90            ___*___*__**______***_________*_*_*_**________***_*__***____*__________******__*_____**___*__*_*_______**__________**____________*__*__*_**_*_**____*__*________________*__*___**______________________________________________________________________*____**___*____________________________________________________
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