# STOCKHOLM 1.0 #=GF ID 3.40.50.300/FF/633197 #=GF DE Replication associated protein #=GF AC 3.40.50.300/FF/633197 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 84.903 #=GS Q805H4/148-298 AC Q805H4 #=GS Q805H4/148-298 OS Porcine circovirus 1 (isolate China) #=GS Q805H4/148-298 DE Replication-associated protein #=GS Q805H4/148-298 DR GENE3D; 0deb330620929dac55b79cd7f9115e00/148-298; #=GS Q805H4/148-298 DR ORG; Viruses; Circoviridae; Circovirus; Porcine circovirus 1; #=GS Q805H4/148-298 DR GO; GO:0039684; #=GS Q805H4/148-298 DR EC; 3.6.1.3; #=GS Q8BB16/147-303 AC Q8BB16 #=GS Q8BB16/147-303 OS Porcine circovirus 2 #=GS Q8BB16/147-303 DE Replication-associated protein #=GS Q8BB16/147-303 DR GENE3D; de05977c4ec361cba68a153c29b5d5a8/147-303; #=GS Q8BB16/147-303 DR ORG; Viruses; Circoviridae; Circovirus; Porcine circovirus 2; #=GS Q8BB16/147-303 DR GO; GO:0039684; #=GS Q8BB16/147-303 DR EC; 3.6.1.3; #=GS Q3L227/148-298 AC Q3L227 #=GS Q3L227/148-298 OS Porcine circovirus 1 #=GS Q3L227/148-298 DE Rep #=GS Q3L227/148-298 DR GENE3D; 0deb330620929dac55b79cd7f9115e00/148-298; #=GS Q3L227/148-298 DR ORG; Viruses; Circoviridae; Circovirus; Porcine circovirus 1; #=GS Q3L227/148-298 DR EC; 3.6.1.3; #=GS Q91EK3/148-276 AC Q91EK3 #=GS Q91EK3/148-276 OS Goose circovirus #=GS Q91EK3/148-276 DE Replication-associated protein #=GS Q91EK3/148-276 DR GENE3D; 3d6bb10e296cd5ec8cee0f8be267c381/148-276; #=GS Q91EK3/148-276 DR ORG; Viruses; Circoviridae; Circovirus; Goose circovirus; #=GS Q91EK3/148-276 DR EC; 3.6.1.3; #=GS Q9IG45/183-299 AC Q9IG45 #=GS Q9IG45/183-299 OS Columbid circovirus #=GS Q9IG45/183-299 DE Replication-associated protein #=GS Q9IG45/183-299 DR GENE3D; ad4661888e170a05501a6a9d89ae501a/183-299; #=GS Q9IG45/183-299 DR ORG; Viruses; Circoviridae; Circovirus; Columbid circovirus; #=GS Q9IG45/183-299 DR EC; 3.6.1.3; #=GS Q8AYV0/148-276 AC Q8AYV0 #=GS Q8AYV0/148-276 OS Goose circovirus #=GS Q8AYV0/148-276 DE Putative replication associated protein #=GS Q8AYV0/148-276 DR GENE3D; 886c94ad9c6871c6696bd832f25b76ea/148-276; #=GS Q8AYV0/148-276 DR ORG; Viruses; Circoviridae; Circovirus; Goose circovirus; #=GS A0A0D3MCT8/115-279 AC A0A0D3MCT8 #=GS A0A0D3MCT8/115-279 OS Bat circovirus #=GS A0A0D3MCT8/115-279 DE Rep #=GS A0A0D3MCT8/115-279 DR GENE3D; db6200ac7b5192c6d6a0fa1af0d36472/115-279; #=GS A0A0D3MCT8/115-279 DR ORG; Viruses; Circoviridae; Circovirus; Bat circovirus; #=GS K9K7M9/146-300 AC K9K7M9 #=GS K9K7M9/146-300 OS Porcine circovirus 2 #=GS K9K7M9/146-300 DE Rep protein #=GS K9K7M9/146-300 DR GENE3D; 0e6ecea026b96b972b7126eb1daf53ab/146-300; #=GS K9K7M9/146-300 DR ORG; Viruses; Circoviridae; Circovirus; Porcine circovirus 2; #=GS W8SNN0/149-290 AC W8SNN0 #=GS W8SNN0/149-290 OS Mink circovirus #=GS W8SNN0/149-290 DE Replication-associated protein #=GS W8SNN0/149-290 DR GENE3D; 436e9047e8893fec1d828d6874898749/149-290; #=GS W8SNN0/149-290 DR ORG; Viruses; Circoviridae; Circovirus; Mink circovirus; #=GS A0A0D3MCK8/150-297 AC A0A0D3MCK8 #=GS A0A0D3MCK8/150-297 OS Bat circovirus #=GS A0A0D3MCK8/150-297 DE Rep #=GS A0A0D3MCK8/150-297 DR GENE3D; 582f3e8554c5df1f3cdf9c52fc9da58b/150-297; #=GS A0A0D3MCK8/150-297 DR ORG; Viruses; Circoviridae; Circovirus; Bat circovirus; #=GS A0A0E3Z3S0/178-276 AC A0A0E3Z3S0 #=GS A0A0E3Z3S0/178-276 OS Zebra finch circovirus #=GS A0A0E3Z3S0/178-276 DE Replicase #=GS A0A0E3Z3S0/178-276 DR GENE3D; 7ec5ae847e7d226ef660053c4676d264/178-276; #=GS A0A0E3Z3S0/178-276 DR ORG; Viruses; Circoviridae; Circovirus; Zebra finch circovirus; #=GS D4N3R0/153-304 AC D4N3R0 #=GS D4N3R0/153-304 OS Human stool-associated circular virus NG13 #=GS D4N3R0/153-304 DE Replication-association protein #=GS D4N3R0/153-304 DR GENE3D; 831d77faef6bab0360a8964051d0df6a/153-304; #=GS D4N3R0/153-304 DR ORG; Viruses; Circoviridae; Circovirus; Human faeces associated circovirus; #=GS A0A088DA36/11-134 AC A0A088DA36 #=GS A0A088DA36/11-134 OS Beak and feather disease virus #=GS A0A088DA36/11-134 DE Replication associated protein #=GS A0A088DA36/11-134 DR GENE3D; 97056485980a89a80921ba9acee52234/11-134; #=GS A0A088DA36/11-134 DR ORG; Viruses; Circoviridae; Circovirus; Beak and feather disease virus; #=GS Q1L2D4/172-270 AC Q1L2D4 #=GS Q1L2D4/172-270 OS Starling circovirus #=GS Q1L2D4/172-270 DE Putative replication-associated protein #=GS Q1L2D4/172-270 DR GENE3D; 9da81746a0ed85dda7990f8768749892/172-270; #=GS Q1L2D4/172-270 DR ORG; Viruses; Circoviridae; Circovirus; Starling circovirus; #=GS A0A0N9N7I3/161-269 AC A0A0N9N7I3 #=GS A0A0N9N7I3/161-269 OS Tadarida brasiliensis circovirus 1 #=GS A0A0N9N7I3/161-269 DE Replicase #=GS A0A0N9N7I3/161-269 DR GENE3D; 85057f3a05bf1502fbdbfee127137f3b/161-269; #=GS A0A0N9N7I3/161-269 DR ORG; Viruses; Circoviridae; Circovirus; Tadarida brasiliensis circovirus 1; #=GS R4LAH3/135-299 AC R4LAH3 #=GS R4LAH3/135-299 OS Bat circovirus #=GS R4LAH3/135-299 DE Replicase #=GS R4LAH3/135-299 DR GENE3D; b2cf1e00d64692395a78acc416fea0b4/135-299; #=GS R4LAH3/135-299 DR ORG; Viruses; Circoviridae; Circovirus; Bat circovirus; #=GS B0YPT4/147-277 AC B0YPT4 #=GS B0YPT4/147-277 OS Swan circovirus #=GS B0YPT4/147-277 DE Putative replication-associated protein #=GS B0YPT4/147-277 DR GENE3D; d058d2a46781a40b3ff59944b6fc3f1d/147-277; #=GS B0YPT4/147-277 DR ORG; Viruses; Circoviridae; Circovirus; Swan circovirus; #=GS K7YJJ8/181-298 AC K7YJJ8 #=GS K7YJJ8/181-298 OS Columbid circovirus #=GS K7YJJ8/181-298 DE Replication-associated protein #=GS K7YJJ8/181-298 DR GENE3D; d26f2a45f048534af9dfac83c71cb69c/181-298; #=GS K7YJJ8/181-298 DR ORG; Viruses; Circoviridae; Circovirus; Columbid circovirus; #=GS A0A0U2KU82/42-199 AC A0A0U2KU82 #=GS A0A0U2KU82/42-199 OS Porcine circovirus #=GS A0A0U2KU82/42-199 DE Replicase protein #=GS A0A0U2KU82/42-199 DR GENE3D; d5af1d7cf000a6d0885dbf2c4787de70/42-199; #=GS A0A0U2KU82/42-199 DR ORG; Viruses; Circoviridae; Circovirus; Porcine circovirus; #=GS A7LI84/149-276 AC A7LI84 #=GS A7LI84/149-276 OS Duck circovirus #=GS A7LI84/149-276 DE Rep #=GS A7LI84/149-276 DR GENE3D; e8b72e7c7914083114bfc98cc15ae7ee/149-276; #=GS A7LI84/149-276 DR ORG; Viruses; Circoviridae; Circovirus; Duck circovirus; #=GS A4GX87/149-276 AC A4GX87 #=GS A4GX87/149-276 OS Muscovy duck circovirus #=GS A4GX87/149-276 DE Rep #=GS A4GX87/149-276 DR GENE3D; e8b72e7c7914083114bfc98cc15ae7ee/149-276; #=GS A4GX87/149-276 DR ORG; Viruses; Circoviridae; Circovirus; Duck circovirus; #=GS R4L1J0/149-286 AC R4L1J0 #=GS R4L1J0/149-286 OS Bat circovirus #=GS R4L1J0/149-286 DE Relicase #=GS R4L1J0/149-286 DR GENE3D; ec8dfb22d200a255f8f71f56bac6b416/149-286; #=GS R4L1J0/149-286 DR ORG; Viruses; Circoviridae; Circovirus; Bat circovirus; #=GS A0A088DA20/100-228 AC A0A088DA20 #=GS A0A088DA20/100-228 OS Beak and feather disease virus #=GS A0A088DA20/100-228 DE Replication associated protein #=GS A0A088DA20/100-228 DR GENE3D; fc9e084effbf5195d1b1e49cfdf368ea/100-228; #=GS A0A088DA20/100-228 DR ORG; Viruses; Circoviridae; Circovirus; Beak and feather disease virus; #=GF TC 173.1 2.0E-54 #=GF SQ 23 Q805H4/148-298 ----------------------------------AELLKVSGKMQQRDWKTAVHVIVGPPGCGKSQWARNF--AEPS-DTYWKPSRNKWWDGYHGEEVVVLDDFYGWLPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEWYSSTAV-PAVEALYRRITTLQFWKTAGEQ--STEVPEGRFEA--- Q8BB16/147-303 ------------------------------FRGLAELLKVSGKMQKRDWKTNVHVIVGPPGCGKSKWAANF--ADPE-TTYWKPPRNKWWDGYHGEEVVVIDDFYGWLPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAV-PAVEALYRRITSLVFWKNATEQ--STEEGG-QFVTLSP Q3L227/148-298 ----------------------------------AELLKVSGKMQQRDWKTAVHVIVGPPGCGKSQWARNF--AEPS-DTYWKPSRNKWWDGYHGEEVVVLDDFYGWLPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEWYSSTAV-PAVEALYRRITTLQFWKTAGEQ--STEVPEGRFEA--- Q91EK3/148-276 -------------------------------------LRQLIVETARDWKTEVIVLIGRPGSGKSRYAFEF----PAREKYYK-SRGKWWDGYNGQDVVVMDDFYGWLPYDDLLRICDRYPLRVEYKGGMTQFVAKTLIITSNREPRDWYKCE---FDVSALYRRINQYLILTP-------------------- Q9IG45/183-299 ------------------------------------------------FKTEVIVITGPPGCGKSRWAADY----PG-SKFYK-MKGEWWDGYDHQEVVIIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEER--CCVQALFRRINKWLVWN--------------------- Q8AYV0/148-276 -------------------------------------LRQLIVETARDWKTEVIVLIGRPGSGKSRYAFEF----PAREKYYK-SRGKWWDGYNGQDVVVMDDFYGWLPYDDLLRICDRYPLRVEYKGGMTQFVAKTLIITSNREPRDWYKCE---FDVSALYRRINQYLILTP-------------------- A0A0D3MCT8/115-279 ELSKAVDLLKKNGGNLSEVADVYPEVYIRHGRGLRDYVTAACLSGQRDWKTRVIVIIGQPGVGKTRYVNSQ--CKGH-SVYWK-PRGPWWDGYTNQECVVFDDFYGWVTFDELLRVCDRYPLKVPVKGSFVEFVAKFIYITSNEPPENWYDKENIRGKIEAFFRRIDEY------------------------- K9K7M9/146-300 -----------------------------NFRGLAELLKVSGKMQTGVWQTTVLVIVAPPGGGKSKCASNF--ADPE-TSYSTPHRNKWWDPSHGEEVVVIDDFYGWLAWADPLRLSDRYSLSVETKKRNLPCLARSILITSNQTPLESYSSTAV-PAPGALYRRITSLVFWKNATEQ--STEEGG-QVVT--- W8SNN0/149-290 --------------------------------------IQAGLTKPRAWKTEVHVIVGPPGVGKSRHVQET--AGEN-ALYWK-PRGKWWDGYTGQSHVVLDDFYGWLPYDDLLRLCDRYPLRVETKGGTVEFVAKVIWITSNKQVKDWYDYEELKVDARALYRRLTTYQVMRQGGELYNVQMT---------- A0A0D3MCK8/150-297 -----------------------------------ELIKASNKLPRRAWKTEVHVHVGPPGCGKSKWASEF--ADPE-VTYWKPPRNKWWDGYASHEVVILDDFYGWLPFDELLRICDRYPLEVEVKGGLVPFLARTVIITSNKMPQEWYSSDAV-PHAEALYRRITTLISWQTATQP--SMGDSAPQY----- A0A0E3Z3S0/178-276 ---------------------------------------------------------------------EQ----EG-TKYYK-MKGDWWDGYSNEDIVVIDDFYGWIPFCELLRLCDRYPHKVPVKGSYVEFTSKKIIITSNTHPNHWYNEEK--CYMQALFRRINKWLFWDVFG------------------ D4N3R0/153-304 --------------------------------------WQLIGFSARDFKTEVFVYVGPPGCGKSRAAAELGAASGG-KVYYK-PRGEWWDGYNGEATVIIDDFYGWLKYDELLRLCDRYPHRVPVKGGFVQFCSKRIILTSNIHVWMWYRFES--YDASALMRRINVYKLWNGSVCTFDDLCDEKYNFLTPLK A0A088DA36/11-134 ---------------------------------------------PRDFKTEVDVIWGPPGCGKSRWANEQ----PG-TKYYK-MRGEWWDGYDGEDIVVLDDFYGWLPYCEMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKED---CDPKPLFRRFTRVWWYTGDKLE---------------- Q1L2D4/172-270 -----------------------------------------------------------------RWANEQ----VG-TKFYK-MKGDWWDGYCNEDIVIIDDFYGWIPFCELLRLCDRYPHKVPVKGSYVEFNSKQIIITSNTPPDSWYNEDK--CYVQALFRRINRWLVW---------------------- A0A0N9N7I3/161-269 ------------------------------------------LVKPRDFKTEVIVLVGEPGSGKSKYANEL----PG-SKYWK-PRGQWWDGYNGEDIVVLDDFYGWVPYDELLRIGDRYPLKVQVKGAFVEFTSKMLVITSNKRPEEWYDKEKI-------------------------------------AD R4LAH3/135-299 -------------------AESHPVQFVRYHRGLSELLKVAGKAKARDWKTSVHVIIGPPGCGKSKWACNF--AEPE-VTFWKAPRNKWWDGYCGQEVVILDDFYGWLPYDEMLRLCDRYPLTVETKGGTVPFLARTILITSNKVPQEWYSSESV-PTAEALFRRITTLQLWKTTTTP--SMESEE-KFVT--- B0YPT4/147-277 ------------------------------------RLRQLIVETLRDWKTEVIVLIGPPGSGKSRYVFEF----PAERKYYK-ARGKWWDGYEGNDVVVMDDFYGWLPYDDLLRICDRYPIRVEYKGGMTQFVAKTLIITSNREPREWYKCE---VDCTALYRRIDRYLVQTPD------------------- K7YJJ8/181-298 ------------------------------------------------FKTEVIVITGPPGCGKSRWAADY----PG-SKFYK-MKGEWWDGYDHQEVVVIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEEK--CCVQALFRRINKWLVWNH-------------------- A0A0U2KU82/42-199 -----------------------------NFRGLAELLKVSGKMQKRDWKTNVHVIVGPPGCGKSKWAAKF--ADPE-TTYWKPPRNKWWDGYHGEEVVVIDDFYGWLPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAV-PAVEALYRRITSLVFWKNATEQ--STEEGG-QFVTLSP A7LI84/149-276 ---------------------------------------HLIVETQRDWKTEVIVLIGPPGTGKSRYAFEF----PAENKYYK-PRGKWWDGYSGNDVVVMDDFYGWLPYDDLLRITDRYPLRVEFKGGMTQFVAKTLIITSNREPRDWYKSE---FDLSALYRRINKYLVYNID------------------- A4GX87/149-276 ---------------------------------------HLIVETQRDWKTEVIVLIGPPGTGKSRYAFEF----PAENKYYK-PRGKWWDGYSGNDVVVMDDFYGWLPYDDLLRITDRYPLRVEFKGGMTQFVAKTLIITSNREPRDWYKSE---FDLSALYRRINKYLVYNID------------------- R4L1J0/149-286 --------------------------------------ITAGLSQQRAWKTEVHVIVGVPGVGKSRHVSEQ----HS-DIYWK-PRGKWWDGYCNQEVVCLDDYYGWIPYDDLLRLCDRYPLRVETKGGTVSFVAKKIYITSNKQIKDWYNFEELKVDPRALYRRVTSYKVMREGGELYDVV------------ A0A088DA20/100-228 ---------------------------------------------PRDFKTEVDVIWGPPGCGKSRWANEQ----PG-TKYYK-MRGEWWDGYDGEDIVVIDDFYGWLPYCEMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKPPETWYKED---CDPKPLFRRFTRVWWYNVDKLE---------QVRS--D #=GC scorecons 00000000000000000000000000000000000001112111225446747374464773776646254001054034858047659998835565975998999675577996699985495498536484673657999437348943521033337768865332333211100000000000000000 #=GC scorecons_70 _________________________________________________**_*_*__*_**_***__*____________*_*__**_*****___*_**_********__****__****__*__**__*_*_**_*_****__*__**__________**_***____________________________ #=GC scorecons_80 ________________________________________________________________________________*_*__*__*****_____*__******_*___***__****__*__**____*__*___****__*__**__________**_**_____________________________ #=GC scorecons_90 __________________________________________________________________________________*_____*****_____*__******______**__****__*__**____*_______***_____**_____________**_____________________________ //