# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/628905
#=GF DE Sigma-54 dependent DNA-binding response regulator, Fis family
#=GF AC 3.40.50.300/FF/628905
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 37.994
#=GS A0A073KJ99/146-323  AC A0A073KJ99
#=GS A0A073KJ99/146-323  OS Shewanella xiamenensis
#=GS A0A073KJ99/146-323  DE Two component, sigma54 specific, Fis family transcriptional regulator
#=GS A0A073KJ99/146-323  DR GENE3D; d552001560f8a51f7d7b2e59218cc66b/146-323; 
#=GS A0A073KJ99/146-323  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella xiamenensis; 
#=GS A0A073KJ99/146-323  DR EC; 3.6.1.15; 
#=GS Q8EB45/140-324      AC Q8EB45
#=GS Q8EB45/140-324      OS Shewanella oneidensis MR-1
#=GS Q8EB45/140-324      DE Two component signal transduction system Sigma54-dependent response regulator Fis family
#=GS Q8EB45/140-324      DR GENE3D; 8ecff5a64607a57d994834c4ea3e186e/140-324; 
#=GS Q8EB45/140-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS Q8EB45/140-324      DR GO; GO:0000156; GO:0000160; GO:0006995; 
#=GS A3QAV0/141-323      AC A3QAV0
#=GS A3QAV0/141-323      OS Shewanella loihica PV-4
#=GS A3QAV0/141-323      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS A3QAV0/141-323      DR GENE3D; 3b26fcbe5fa8ab0e963ff585e0b0df02/141-323; 
#=GS A3QAV0/141-323      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella loihica; 
#=GS D4ZG42/143-323      AC D4ZG42
#=GS D4ZG42/143-323      OS Shewanella violacea DSS12
#=GS D4ZG42/143-323      DE Sigma-54 dependent nitrogen response regulator
#=GS D4ZG42/143-323      DR GENE3D; 6aaee68c2b77ca39c7bf13a892f5ce87/143-323; 
#=GS D4ZG42/143-323      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella violacea; 
#=GS A0A0Q0I3M0/145-328  AC A0A0Q0I3M0
#=GS A0A0Q0I3M0/145-328  OS Shewanella sp. P1-14-1
#=GS A0A0Q0I3M0/145-328  DE Nitrogen regulation protein NR(I)
#=GS A0A0Q0I3M0/145-328  DR GENE3D; 8af0f3df40efbb459ac90266b654cdff/145-328; 
#=GS A0A0Q0I3M0/145-328  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella sp. P1-14-1; 
#=GS Q12KA0/146-323      AC Q12KA0
#=GS Q12KA0/146-323      OS Shewanella denitrificans OS217
#=GS Q12KA0/146-323      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS Q12KA0/146-323      DR GENE3D; 912c7f11bf37965e1086340b93b16d64/146-323; 
#=GS Q12KA0/146-323      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella denitrificans; 
#=GS B1KH13/143-324      AC B1KH13
#=GS B1KH13/143-324      OS Shewanella woodyi ATCC 51908
#=GS B1KH13/143-324      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS B1KH13/143-324      DR GENE3D; 9f1ea2c7f6ae7805b464eb511ab7c2b1/143-324; 
#=GS B1KH13/143-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella woodyi; 
#=GS A1S9K7/170-353      AC A1S9K7
#=GS A1S9K7/170-353      OS Shewanella amazonensis SB2B
#=GS A1S9K7/170-353      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS A1S9K7/170-353      DR GENE3D; b22df9c7bcec8a8fca41585fba15ab5f/170-353; 
#=GS A1S9K7/170-353      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella amazonensis; 
#=GS B8CJ82/142-324      AC B8CJ82
#=GS B8CJ82/142-324      OS Shewanella piezotolerans WP3
#=GS B8CJ82/142-324      DE Sigma-54 dependent nitrogen response regulator
#=GS B8CJ82/142-324      DR GENE3D; 1bdec4257777b73332fcfa30013acc12/142-324; 
#=GS B8CJ82/142-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella piezotolerans; 
#=GS A0L0B2/145-323      AC A0L0B2
#=GS A0L0B2/145-323      OS Shewanella sp. ANA-3
#=GS A0L0B2/145-323      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS A0L0B2/145-323      DR GENE3D; 536853769a7be37f0d66aa6f9a20c742/145-323; 
#=GS A0L0B2/145-323      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella sp. ANA-3; 
#=GS Q086R1/162-338      AC Q086R1
#=GS Q086R1/162-338      OS Shewanella frigidimarina NCIMB 400
#=GS Q086R1/162-338      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS Q086R1/162-338      DR GENE3D; 4ac880abac34ce96ae1f29e644ad85f3/162-338; 
#=GS Q086R1/162-338      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella frigidimarina; 
#=GS A8H7Y8/142-323      AC A8H7Y8
#=GS A8H7Y8/142-323      OS Shewanella pealeana ATCC 700345
#=GS A8H7Y8/142-323      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS A8H7Y8/142-323      DR GENE3D; 5175c417e81e5b2577bd8fb3307701fd/142-323; 
#=GS A8H7Y8/142-323      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella pealeana; 
#=GS A0A0C3R369/141-323  AC A0A0C3R369
#=GS A0A0C3R369/141-323  OS Shewanella sp. cp20
#=GS A0A0C3R369/141-323  DE Histidine kinase
#=GS A0A0C3R369/141-323  DR GENE3D; 5b717e99e35325f501126df32b597312/141-323; 
#=GS A0A0C3R369/141-323  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella sp. cp20; 
#=GS B0TSM4/147-324      AC B0TSM4
#=GS B0TSM4/147-324      OS Shewanella halifaxensis HAW-EB4
#=GS B0TSM4/147-324      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS B0TSM4/147-324      DR GENE3D; 6e6879714fa3e6cc04184dd478da8105/147-324; 
#=GS B0TSM4/147-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella halifaxensis; 
#=GS A8FZQ0/143-324      AC A8FZQ0
#=GS A8FZQ0/143-324      OS Shewanella sediminis HAW-EB3
#=GS A8FZQ0/143-324      DE Two component, sigma54 specific, transcriptional regulator, fis family
#=GS A8FZQ0/143-324      DR GENE3D; 72baa6354b949bfeb477e371f7f97470/143-324; 
#=GS A8FZQ0/143-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella sediminis; 
#=GS A9L3G1/141-324      AC A9L3G1
#=GS A9L3G1/141-324      OS Shewanella baltica OS195
#=GS A9L3G1/141-324      DE Two component, sigma54 specific, transcriptional regulator, Fis family
#=GS A9L3G1/141-324      DR GENE3D; 82f7e70bd51233aaa915adaa34a96c90/141-324; 
#=GS A9L3G1/141-324      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella baltica; 
#=GS A0A1E5IRU4/142-324  AC A0A1E5IRU4
#=GS A0A1E5IRU4/142-324  OS Shewanella colwelliana
#=GS A0A1E5IRU4/142-324  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A1E5IRU4/142-324  DR GENE3D; acf91dfcdccf79f18ce920de028d07dd/142-324; 
#=GS A0A1E5IRU4/142-324  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella colwelliana; 
#=GF TC 327.8 1.5E-101
#=GF SQ 17
A0A073KJ99/146-323          ------ADADLCGIVFGSGAMQRCIDLALQLARSDVSVLITGPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLAQDIAEGRFREDLFYRLNVIELALPP-
Q8EB45/140-324              QRQVAIADAELCGIVFGSGAMQRCIDLALQLARSDVSVLITGPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARMGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLAQDIAEGRFREDLFYRLNVIELALPPL
A3QAV0/141-323              -RMSAIKDADLCGIVFGSGAMQRCIDLALQIAKSDVSVLITGPNGAGKDKLADILHANSPLKHKPFIKVNIGALPMELLEAELFGAEAGAFTGANKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVKVRVISATNADLAEDIASGRFREDLFYRLNVIELALPP-
D4ZG42/143-323              ---VAIKDADLCGIVFASGSMQRSVDLALQIARSDVSVLITGPNGAGKDKLADIIHANSPLKNKPFIKVNIGALPMDLLEAELFGAEAGAFTGANKTRIGRFEAADGGTLFLDEIGNLSLSGQIKLLRVLQTGEFERLGSHQTRKVKVRVLSATNAELALDIREGRFREDLFYRLNVIELELSP-
A0A0Q0I3M0/145-328          -RMSVINNADLCGMVFGSGAMQRCIDLALQVAKSDVSVMITGPNGAGKDKIADIVQANSLLNKQPFIKVNIGALPMDLLEAELFGAEAGAFTGANKVRIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVISATNADLADDIAKGTFREDLFYRLNVIELPLPPL
Q12KA0/146-323              ------TQGNLCGLIFASGAMQRCVDLALQIARSDVSVLVTGPNGAGKDKIADILHANSPLKDKPFIKVNIGALPMDLLEAELFGAEAGAFTGANKVRIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVLSATNSNLTEDIAKGRFREDLFYRLNVIELKLPS-
B1KH13/143-324              ---SAIKGADLCGIVFGSGAMQRSVDLALQIARSDVSVLITGPNGAGKDKLADIIHANSSLKTKPFIKVNVGALPIDLLEAELFGAEAGAFTGANKTRIGRFEAADGGTLFLDEIGNLPLSGQIKLLRVLQTGEFERLGSHQTKKVNVRVLSATNADLAEDIKQGCFREDLFYRLNVIELALAPL
A1S9K7/170-353              -RTAVIHEANLCGLVFGSTAMERCVDLALQLAKSDVSVLITGPNGAGKDRLADILHANSPLKDKPFIKVNVGALPMELMEAELFGAEAGAFTGATKSRIGRFEAANGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKCKVRVLSATNADLRQDIQTGRFREDLFYRLNVVELALPPL
B8CJ82/142-324              --MAAIKDADLCGIVFNSGAMQRCVDLALQIARSDVSVLVTGPNGAGKDKLADIIHANSNLKHKPFIKVNIGALPMELLEAELFGAEAGAFTGATKSRIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVISATNADLIHEIQASRFREDLFYRLNVIELALPAL
A0L0B2/145-323              -----IADADLCGIVFGSGAMQRCIDLALQLARSDVSVLITGPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLAQDIAEGRFREDLFYRLNVIELALPP-
Q086R1/162-338              -------GADLCGLIFGSGAMQRCVDLALQVARSDVSVMITGPNGAGKDKIADILQANSPLKDKPFIKVNIGALPMDLLEAELFGAEAGAFTGANKTRMGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVISATNADLADDIAHGRFREDLFYRLNVIELAISP-
A8H7Y8/142-323              --MVAIKDAELCGIVFNSGAMQRCVDLALQIAKSDVSVLITGPNGAGKDKLADIIHANSPLRYKPFIKVNIGALPMDLLEAELFGAEAGAYTGATKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRRVNVRVVSATNADLAQDIQAGRFREDLFYRLNVIELALPA-
A0A0C3R369/141-323          -RMSAIKDADLCGIVFGSGAMQRCIDLALQIAKSDVSVLITGPNGAGKDKLADILHANSPLKHKPFIKVNIGALPMELLEAELFGAEAGAFTGANKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVKVRVISATNADLAEDIASGRFREDLFYRLNVIELALPP-
B0TSM4/147-324              -------DADLCGMVFNSGAMQRCVDLALQIARSDVSVLITGPNGAGKDKLADIIHANSPLKHKPFIKVNIGALPMDLLEAELFGAEAGAFTGATKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVKVRVISATNANLAEEIQTGRFREDLFYRLNVIELALPTL
A8FZQ0/143-324              ---SAIKGADLCGIVFGSGAMQRCVDLALQIARSDVSVLITGPNGAGKDKLADIIHANSPLKSKPFIKVNIGALPMELLEAELFGAEAGAFTGANKTRIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVLSATNADLDEEIRTGRFREDLFYRLNVIELALPPL
A9L3G1/141-324              -RQVAFADADLCGIVFGSGAMQRCIDLALQLARSDVSVLITGPNGAGKDKLADILHANSPLKNKPFIKVNVGALPMDLLEAELFGAEAGAFTGATKARIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTQKVKVRVISATNADLAQDIAEGRFREDLFYRLNVIELALSPL
A0A1E5IRU4/142-324          --MSVINDAQLCGIIFASGAMQRCIDLALQIAKSDVSVLITGPNGAGKDKLADIIHANSPLQNKPFIKVNIGALPMELLEAELFGAEAGAFTGANKTRIGRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKVNVRVISATNADLADDIAAGRFREDLFYRLNVIELALPPL
#=GC scorecons              00123435869996795988989779999969799999789999999998799967999697489999997999987989999999999989996959899999989999999999998999989999999999999999979587699969999879647953879999999999989968662
#=GC scorecons_70           ________********_*************_*******************************_*********************************_**********************************************_**_***********__**__********************_
#=GC scorecons_80           ________*_***_**_*******_*****_***********************_****_**_*************_*****************_*_**********************************************_**_***_*******__**__****************_*___
#=GC scorecons_90           ________*_***__*_******__*****_*_*****_***********_***__***_*__*******_*****_*****************_*_*_******************************************_*_*__***_*****_*___*__*_**************_*___
//