# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/441408
#=GF DE Replicase polyprotein 1ab
#=GF AC 3.40.50.300/FF/441408
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 12.325
#=GS P0C6Y1/5309-5462      AC P0C6Y1
#=GS P0C6Y1/5309-5462      OS Avian infectious bronchitis virus (strain Beaudette)
#=GS P0C6Y1/5309-5462      DE Replicase polyprotein 1ab
#=GS P0C6Y1/5309-5462      DR GENE3D; 5243b6d1879cb4abb49d01ae13e401f0/5309-5462; 
#=GS P0C6Y1/5309-5462      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS P0C6Y1/5309-5462      DR EC; 2.7.7.48; 3.6.4.12; 3.6.4.13; 
#=GS P0C6Y2/5309-5462      AC P0C6Y2
#=GS P0C6Y2/5309-5462      OS Avian infectious bronchitis virus (strain Beaudette CK)
#=GS P0C6Y2/5309-5462      DE Replicase polyprotein 1ab
#=GS P0C6Y2/5309-5462      DR GENE3D; db280800c1fb0e81c0f6d85640d4f811/5309-5462; 
#=GS P0C6Y2/5309-5462      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS P0C6Y2/5309-5462      DR EC; 2.7.7.48; 3.6.4.12; 3.6.4.13; 
#=GS P0C6Y3/5311-5465      AC P0C6Y3
#=GS P0C6Y3/5311-5465      OS Avian infectious bronchitis virus (strain M41)
#=GS P0C6Y3/5311-5465      DE Replicase polyprotein 1ab
#=GS P0C6Y3/5311-5465      DR GENE3D; f2c75b19c67e9ed2c37cb03f1f3c49bf/5311-5465; 
#=GS P0C6Y3/5311-5465      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS P0C6Y3/5311-5465      DR EC; 2.7.7.48; 3.6.4.12; 3.6.4.13; 
#=GS A0A059SFS7/5058-5210  AC A0A059SFS7
#=GS A0A059SFS7/5058-5210  OS Infectious bronchitis virus
#=GS A0A059SFS7/5058-5210  DE ORF1ab
#=GS A0A059SFS7/5058-5210  DR GENE3D; 0337706a3e1855f4770013b57a9e776b/5058-5210; 
#=GS A0A059SFS7/5058-5210  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS A0A1L2FT79/5333-5486  AC A0A1L2FT79
#=GS A0A1L2FT79/5333-5486  OS Infectious bronchitis virus
#=GS A0A1L2FT79/5333-5486  DE 1ab pol protein
#=GS A0A1L2FT79/5333-5486  DR GENE3D; 088cd1da461337f472ba21da5e86f966/5333-5486; 
#=GS A0A1L2FT79/5333-5486  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS A0A0M3R806/5225-5377  AC A0A0M3R806
#=GS A0A0M3R806/5225-5377  OS Infectious bronchitis virus
#=GS A0A0M3R806/5225-5377  DE 1ab protein
#=GS A0A0M3R806/5225-5377  DR GENE3D; 5634868f61a168ba9f1294357adcc4f5/5225-5377; 
#=GS A0A0M3R806/5225-5377  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS C7S7Y8/5307-5463      AC C7S7Y8
#=GS C7S7Y8/5307-5463      OS Infectious bronchitis virus
#=GS C7S7Y8/5307-5463      DE 1ab polyprotein
#=GS C7S7Y8/5307-5463      DR GENE3D; 8786b3f2654ac4c0154923eb669c12ea/5307-5463; 
#=GS C7S7Y8/5307-5463      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS Q6VMD6/5329-5479      AC Q6VMD6
#=GS Q6VMD6/5329-5479      OS Infectious bronchitis virus
#=GS Q6VMD6/5329-5479      DE 1ab polyprotein
#=GS Q6VMD6/5329-5479      DR GENE3D; 937e000ab169d865e047d0a33e9a3c74/5329-5479; 
#=GS Q6VMD6/5329-5479      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS A0A023PMZ4/5290-5442  AC A0A023PMZ4
#=GS A0A023PMZ4/5290-5442  OS Infectious bronchitis virus
#=GS A0A023PMZ4/5290-5442  DE ORF1ab
#=GS A0A023PMZ4/5290-5442  DR GENE3D; ae33f6095d7bca9de3286aad545dbb94/5290-5442; 
#=GS A0A023PMZ4/5290-5442  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GS B4UU00/1332-1484      AC B4UU00
#=GS B4UU00/1332-1484      OS Infectious bronchitis virus
#=GS B4UU00/1332-1484      DE Pol protein
#=GS B4UU00/1332-1484      DR GENE3D; e521249f224c8ed7e29d749feea714f6/1332-1484; 
#=GS B4UU00/1332-1484      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus; Avian coronavirus; 
#=GF TC 354.7 1.9E-110
#=GF SQ 10
P0C6Y1/5309-5462              YRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD---
P0C6Y2/5309-5462              YRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD---
P0C6Y3/5311-5465              YRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNGNSDVGHESGSAYNITQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFIELDS--
A0A059SFS7/5058-5210          YRCPKEIVDTVSTLVYDGKFVANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTEL----
A0A1L2FT79/5333-5486          YRCPKEIVDTVSTLVYDGKFVANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD---
A0A0M3R806/5225-5377          YRCPKEIVDTVSTLVYDGKFVANNPESRECFKVVVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSLHAVNINRFNVALTRAKRGILVVMRQRDELYSALKFTEL----
C7S7Y8/5307-5463              YRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYQALKFIELDSEA
Q6VMD6/5329-5479              YRCPKEIVDTVSTLVYDGKFVANNPESRECFKVVVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYAALKFT------
A0A023PMZ4/5290-5442          YRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNGNFDVGHESGSAYNTTQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTEL----
B4UU00/1332-1484              YRCPKEIVDTVSTLVYDGKFVANNPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFVKDFVCRNKQWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTEL----
#=GC scorecons                9999999999999999999979999999799997999997999999999997999999999999997999979999999999999999999999999999999999999999997997999999999999999999999999999599996662000
#=GC scorecons_70             *************************************************************************************************************************************************_*******____
#=GC scorecons_80             ********************_*******_*************************************_******************************************************************************_****_______
#=GC scorecons_90             ********************_*******_****_*****_***********_**************_****_******************************************_**_***************************_****_______
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