# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/422238
#=GF DE SNF2 domain-containing protein CLASSY 1
#=GF AC 3.40.50.300/FF/422238
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 24.672
#=GS Q9M297/981-1254       AC Q9M297
#=GS Q9M297/981-1254       OS Arabidopsis thaliana
#=GS Q9M297/981-1254       DE SNF2 domain-containing protein CLASSY 1
#=GS Q9M297/981-1254       DR GENE3D; 9cccefb41357988a52d527776f6d1e82/981-1254; 
#=GS Q9M297/981-1254       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9M297/981-1254       DR GO; GO:0005730; GO:0031047; 
#=GS F4K493/987-1260       AC F4K493
#=GS F4K493/987-1260       OS Arabidopsis thaliana
#=GS F4K493/987-1260       DE SNF2 domain-containing protein CLASSY 2
#=GS F4K493/987-1260       DR GENE3D; 3fb0845f7a0f73194c3502e96331caab/987-1260; 
#=GS F4K493/987-1260       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A1I9LTS2/983-1256   AC A0A1I9LTS2
#=GS A0A1I9LTS2/983-1256   OS Arabidopsis thaliana
#=GS A0A1I9LTS2/983-1256   DE Chromatin remodeling 38
#=GS A0A1I9LTS2/983-1256   DR GENE3D; 6a2475712222bd39648b863927f4ed33/983-1256; 
#=GS A0A1I9LTS2/983-1256   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178VEK9/981-1254   AC A0A178VEK9
#=GS A0A178VEK9/981-1254   OS Arabidopsis thaliana
#=GS A0A178VEK9/981-1254   DE CLSY1
#=GS A0A178VEK9/981-1254   DR GENE3D; 9cccefb41357988a52d527776f6d1e82/981-1254; 
#=GS A0A178VEK9/981-1254   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS V4MJU2/1004-1277      AC V4MJU2
#=GS V4MJU2/1004-1277      OS Eutrema salsugineum
#=GS V4MJU2/1004-1277      DE Uncharacterized protein
#=GS V4MJU2/1004-1277      DR GENE3D; 254823a3cf91522aaa8a6994aba096ef/1004-1277; 
#=GS V4MJU2/1004-1277      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS M4CDM1/972-1245       AC M4CDM1
#=GS M4CDM1/972-1245       OS Brassica rapa subsp. pekinensis
#=GS M4CDM1/972-1245       DE Uncharacterized protein
#=GS M4CDM1/972-1245       DR GENE3D; 3d232acc7a4e804ebc90ab2deceb3344/972-1245; 
#=GS M4CDM1/972-1245       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7LPC8/979-1252       AC D7LPC8
#=GS D7LPC8/979-1252       OS Arabidopsis lyrata subsp. lyrata
#=GS D7LPC8/979-1252       DE Putative uncharacterized protein
#=GS D7LPC8/979-1252       DR GENE3D; 47817787ffca0d472d672f3e03268a40/979-1252; 
#=GS D7LPC8/979-1252       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A078DYT7/991-1264   AC A0A078DYT7
#=GS A0A078DYT7/991-1264   OS Brassica napus
#=GS A0A078DYT7/991-1264   DE BnaA10g15020D protein
#=GS A0A078DYT7/991-1264   DR GENE3D; 68b259859c49c06d8c9c142b28475a7a/991-1264; 
#=GS A0A078DYT7/991-1264   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS V4LI40/1006-1279      AC V4LI40
#=GS V4LI40/1006-1279      OS Eutrema salsugineum
#=GS V4LI40/1006-1279      DE Uncharacterized protein
#=GS V4LI40/1006-1279      DR GENE3D; 8d5623e1a01cd8e2357c77b0e8f496b0/1006-1279; 
#=GS V4LI40/1006-1279      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A078J182/991-1264   AC A0A078J182
#=GS A0A078J182/991-1264   OS Brassica napus
#=GS A0A078J182/991-1264   DE BnaC09g54090D protein
#=GS A0A078J182/991-1264   DR GENE3D; def15aa554273ad27c5ba6914df6a414/991-1264; 
#=GS A0A078J182/991-1264   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3EDT2/1012-1285  AC A0A0D3EDT2
#=GS A0A0D3EDT2/1012-1285  OS Brassica oleracea var. oleracea
#=GS A0A0D3EDT2/1012-1285  DE Uncharacterized protein
#=GS A0A0D3EDT2/1012-1285  DR GENE3D; ef7bf4845349105487f68ae0750709c2/1012-1285; 
#=GS A0A0D3EDT2/1012-1285  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS M4DX12/997-1270       AC M4DX12
#=GS M4DX12/997-1270       OS Brassica rapa subsp. pekinensis
#=GS M4DX12/997-1270       DE Uncharacterized protein
#=GS M4DX12/997-1270       DR GENE3D; 08cb0b85cf12bd5ba8beebbb6bc419ef/997-1270; 
#=GS M4DX12/997-1270       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7M012/986-1259       AC D7M012
#=GS D7M012/986-1259       OS Arabidopsis lyrata subsp. lyrata
#=GS D7M012/986-1259       DE Putative uncharacterized protein
#=GS D7M012/986-1259       DR GENE3D; 0b7886131a5992ed1423a16a7f8556bf/986-1259; 
#=GS D7M012/986-1259       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS R0GUE6/986-1259       AC R0GUE6
#=GS R0GUE6/986-1259       OS Capsella rubella
#=GS R0GUE6/986-1259       DE Uncharacterized protein
#=GS R0GUE6/986-1259       DR GENE3D; 86e8427417f8dac79f0f96f61ff3d746/986-1259; 
#=GS R0GUE6/986-1259       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS R0FCI7/988-1261       AC R0FCI7
#=GS R0FCI7/988-1261       OS Capsella rubella
#=GS R0FCI7/988-1261       DE Uncharacterized protein
#=GS R0FCI7/988-1261       DR GENE3D; 931db59de522de3f38312c2891290683/988-1261; 
#=GS R0FCI7/988-1261       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A087GVE1/974-1247   AC A0A087GVE1
#=GS A0A087GVE1/974-1247   OS Arabis alpina
#=GS A0A087GVE1/974-1247   DE Uncharacterized protein
#=GS A0A087GVE1/974-1247   DR GENE3D; e63f2d6c2a55d81ea5284dada7c28490/974-1247; 
#=GS A0A087GVE1/974-1247   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS A0A0D3DMF3/996-1269   AC A0A0D3DMF3
#=GS A0A0D3DMF3/996-1269   OS Brassica oleracea var. oleracea
#=GS A0A0D3DMF3/996-1269   DE Uncharacterized protein
#=GS A0A0D3DMF3/996-1269   DR GENE3D; fa779ad7eaf4e8688b91ab8a18573c97/996-1269; 
#=GS A0A0D3DMF3/996-1269   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GF TC 0.0 0.0E+00
#=GF SQ 17
Q9M297/981-1254               QIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTCCAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
F4K493/987-1260               QIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSNCCTKFFNPQELSEIGKLKHDAKKGSKVMFVLNLIFRVVKREKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIFSEEFVADPSLWQAEKIEDDILREIVGEDKVKSFHMIMKNEKAST
A0A1I9LTS2/983-1256           QIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTCCAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
A0A178VEK9/981-1254           QIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTCCAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
V4MJU2/1004-1277              QIYTLLMNSTDLQHKTLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFIELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVEEDRVKSFHMIMKNEKAST
M4CDM1/972-1245               QIYTLLMNSTDIQHKILTKLGNVMASYHGFLLELELLVTLAAIHPWLVKTSACCAKFLNPQELLEIEKLKPDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFIELFESIFRWQRGREILTLTGDQELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYKRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKAST
D7LPC8/979-1252               QIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTCCTKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWQRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
A0A078DYT7/991-1264           QIYTLLMNSTDIQHKILTKLGNVMASYHGFLLELELLVTLAAIHPWLVKTSACCAKFLNPQELLEIEKLKPDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFIELFESIFRWQRGREILTLTGDQELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYKRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKAST
V4LI40/1006-1279              QIYTLLMNSTDIQHNILTKLQNVMETYHGFPLELELLVTLAAIHPWLVKTSTCCAKFFNPQELVEIEKLKHDAKKGSKVMFVLNMVFRVVKREKILIFCHNIAPIRLFIELFENVFRWQRGKEILTLTGDLELFERGRVIDKFEDPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKIVYVYQLLSRGTLEEDKYKRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKAST
A0A078J182/991-1264           QIYTLLMNSTDIQHKILTKLGNVMASYHGFLLELELLVTLAAIHPWLVKTSACCAKFLNAQELLEIERLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFIELFESIFRWQRGREILTLTGDQELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYKRTTWKEWVSSMIFSEDFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKAST
A0A0D3EDT2/1012-1285          QIYTLLMNSTDIQHKILTKLGNVMASYHGFLLELELLVTLAAIHPWLVKTSACCAKFLNAQELLEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFIELFESIFRWQRGREILTLTGDQELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYKRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKAST
M4DX12/997-1270               QIYTLLMNSTDLQHKTLTKLQTVMSTYHGYPLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGREILTLTGDLELFDRGRVIDKFEEHGGPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
D7M012/986-1259               QIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSNCCKKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVYRVVKREKILIFCHNIAPIRMFTELFENVFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVADPSLWQAEKIEDDVLREIVGEDKVKSFHMIMKNEKAST
R0GUE6/986-1259               QIYTLLMNSTDIQHKTLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTCCTKFFNPQELSEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWQRGRELLTLTGDLELFERGRVIDKFEEPGGPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
R0FCI7/988-1261               QIYTLLMNSADVQHKILTKLQDVIKTNYGYQLEVELQVTLAAIHPWLVKTSNCCTKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVYRVVKREKILIFCHNIAPIRLFIEMFENVFRWQRGREILTLTGDLELFERGRVIDKFEEHGNPSRILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRAKSFHMIMKNEKAST
A0A087GVE1/974-1247           QIYTLLMNSTDVQHKTLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVVKKEKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVFVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSMWQAEKIEDDVLREIVEEDRVKSFHMIMKNEKAST
A0A0D3DMF3/996-1269           QIYTLLMNSTDLQHKTLTKLQTVMSTYHGYPLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGREILTLTGDLELFDRGRVIDKFEEHGGPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVHVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKAST
#=GC scorecons                9999979998969985999966774676975997996799999999997765996997977995998899799999999999998889999899999999999999795989967999699896999999699989999999998795699899999999999999999999999999999999999999999999998989999999999999997999999999899999899799959999999998999996997899999999999999
#=GC scorecons_70             ***************_*****_**_*****_*****_**************_**_********_********************************************_*********************_****************_*******************************************************************************************_***************_******************
#=GC scorecons_80             ***********_***_****__**__*_**_**_**__**********_*__**_**_**_**_********************************************_****_****_****_******_**************_*__**************************************************************************************_***_***************_**_***************
#=GC scorecons_90             *****_*****_***_****________*__**_**__**********____**_**_*__**_******_***********************************_*_****__***_****_******_**************_*__*******************************************************************_******************_***_***************_**_***************
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