# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/417386
#=GF DE ATP-dependent helicase YqhH
#=GF AC 3.40.50.300/FF/417386
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 33.106
#=GS A0A0M0L3P7/271-551  AC A0A0M0L3P7
#=GS A0A0M0L3P7/271-551  OS Jeotgalibacillus marinus
#=GS A0A0M0L3P7/271-551  DE ATP-dependent helicase
#=GS A0A0M0L3P7/271-551  DR GENE3D; cf3ec4ad89fcc85b3d6f0c42727c362b/271-551; 
#=GS A0A0M0L3P7/271-551  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus; Jeotgalibacillus marinus; 
#=GS A0A0M0L3P7/271-551  DR EC; 3.1.21.5; 
#=GS G4NQ81/271-551      AC G4NQ81
#=GS G4NQ81/271-551      OS Bacillus subtilis subsp. spizizenii TU-B-10
#=GS G4NQ81/271-551      DE YqhH
#=GS G4NQ81/271-551      DR GENE3D; cf3ec4ad89fcc85b3d6f0c42727c362b/271-551; 
#=GS G4NQ81/271-551      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. spizizenii; 
#=GS G4NQ81/271-551      DR EC; 3.1.21.5; 
#=GS P54509/325-548      AC P54509
#=GS P54509/325-548      OS Bacillus subtilis subsp. subtilis str. 168
#=GS P54509/325-548      DE Uncharacterized ATP-dependent helicase YqhH
#=GS P54509/325-548      DR GENE3D; 5a786f804b56cc9fe608c57a34ca982b/325-548; 
#=GS P54509/325-548      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS S6FMQ6/305-497      AC S6FMQ6
#=GS S6FMQ6/305-497      OS Bacillus velezensis UCMB5033
#=GS S6FMQ6/305-497      DE Putative RNA polymerase-associated helicase protein
#=GS S6FMQ6/305-497      DR GENE3D; 08c493e5797535f1504085a73ca06394/305-497; 
#=GS S6FMQ6/305-497      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus velezensis; 
#=GS A0A0K6LZE9/108-388  AC A0A0K6LZE9
#=GS A0A0K6LZE9/108-388  OS Bacillus subtilis
#=GS A0A0K6LZE9/108-388  DE RNA polymerase-associated protein RapA
#=GS A0A0K6LZE9/108-388  DR GENE3D; 2b90176e7a51e54292a585b5a5a48492/108-388; 
#=GS A0A0K6LZE9/108-388  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS A0A1A5V8N4/274-543  AC A0A1A5V8N4
#=GS A0A1A5V8N4/274-543  OS Bacillus amyloliquefaciens
#=GS A0A1A5V8N4/274-543  DE Putative ATP-dependent helicase YqhH
#=GS A0A1A5V8N4/274-543  DR GENE3D; 5484cd81114267005127601ed8a342a5/274-543; 
#=GS A0A1A5V8N4/274-543  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS A0A0A0TTP2/274-543  AC A0A0A0TTP2
#=GS A0A0A0TTP2/274-543  OS Bacillus subtilis
#=GS A0A0A0TTP2/274-543  DE ATP-dependent helicase
#=GS A0A0A0TTP2/274-543  DR GENE3D; 5484cd81114267005127601ed8a342a5/274-543; 
#=GS A0A0A0TTP2/274-543  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS L8AK08/325-548      AC L8AK08
#=GS L8AK08/325-548      OS Bacillus subtilis BEST7613
#=GS L8AK08/325-548      DE RNA polymerase-associated helicase
#=GS L8AK08/325-548      DR GENE3D; 5a786f804b56cc9fe608c57a34ca982b/325-548; 
#=GS L8AK08/325-548      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS A0A1B2BD40/325-548  AC A0A1B2BD40
#=GS A0A1B2BD40/325-548  OS Bacillus subtilis subsp. subtilis
#=GS A0A1B2BD40/325-548  DE ATP-dependent helicase
#=GS A0A1B2BD40/325-548  DR GENE3D; 5a786f804b56cc9fe608c57a34ca982b/325-548; 
#=GS A0A1B2BD40/325-548  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS A0A162S7T0/325-548  AC A0A162S7T0
#=GS A0A162S7T0/325-548  OS Bacillus subtilis
#=GS A0A162S7T0/325-548  DE Superfamily II DNA/RNA helicases SNF2 family
#=GS A0A162S7T0/325-548  DR GENE3D; 5a786f804b56cc9fe608c57a34ca982b/325-548; 
#=GS A0A162S7T0/325-548  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS A0A0K6LDB7/274-542  AC A0A0K6LDB7
#=GS A0A0K6LDB7/274-542  OS Bacillus amyloliquefaciens
#=GS A0A0K6LDB7/274-542  DE RNA polymerase-associated protein RapA
#=GS A0A0K6LDB7/274-542  DR GENE3D; 69ff3f348e162d55ae2c38f8b251dbb7/274-542; 
#=GS A0A0K6LDB7/274-542  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS A0A0E1LRL3/274-542  AC A0A0E1LRL3
#=GS A0A0E1LRL3/274-542  OS Bacillus sp. BH072
#=GS A0A0E1LRL3/274-542  DE ATP-dependent helicase
#=GS A0A0E1LRL3/274-542  DR GENE3D; 69ff3f348e162d55ae2c38f8b251dbb7/274-542; 
#=GS A0A0E1LRL3/274-542  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sp. BH072; 
#=GS A0A0K6KE05/325-549  AC A0A0K6KE05
#=GS A0A0K6KE05/325-549  OS Bacillus cereus
#=GS A0A0K6KE05/325-549  DE RNA polymerase-associated protein RapA
#=GS A0A0K6KE05/325-549  DR GENE3D; 88fa7e14a2d76c45c365ca7932db83c1/325-549; 
#=GS A0A0K6KE05/325-549  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus; 
#=GS A0A1L3SIP2/325-549  AC A0A1L3SIP2
#=GS A0A1L3SIP2/325-549  OS Bacillus subtilis
#=GS A0A1L3SIP2/325-549  DE ATP-dependent helicase
#=GS A0A1L3SIP2/325-549  DR GENE3D; 88fa7e14a2d76c45c365ca7932db83c1/325-549; 
#=GS A0A1L3SIP2/325-549  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS E1UKZ4/331-604      AC E1UKZ4
#=GS E1UKZ4/331-604      OS Bacillus amyloliquefaciens DSM 7
#=GS E1UKZ4/331-604      DE Putative RNA polymerase-associated helicase protein
#=GS E1UKZ4/331-604      DR GENE3D; e2390f83686aa50c9b18f31ca5649987/331-604; 
#=GS E1UKZ4/331-604      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS A0A0K6LGQ0/305-497  AC A0A0K6LGQ0
#=GS A0A0K6LGQ0/305-497  OS Bacillus amyloliquefaciens
#=GS A0A0K6LGQ0/305-497  DE RNA polymerase-associated protein RapA
#=GS A0A0K6LGQ0/305-497  DR GENE3D; ea16b82c1727dc2f7237acd3c36c7cb4/305-497; 
#=GS A0A0K6LGQ0/305-497  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS A0A1A0D2K7/305-497  AC A0A1A0D2K7
#=GS A0A1A0D2K7/305-497  OS Bacillus siamensis
#=GS A0A1A0D2K7/305-497  DE Putative ATP-dependent helicase YqhH
#=GS A0A1A0D2K7/305-497  DR GENE3D; ee0b58a2ab096747d34816a869940d3f/305-497; 
#=GS A0A1A0D2K7/305-497  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus siamensis; 
#=GS A0A0K6MB55/324-549  AC A0A0K6MB55
#=GS A0A0K6MB55/324-549  OS Bacillus subtilis
#=GS A0A0K6MB55/324-549  DE RNA polymerase-associated protein RapA
#=GS A0A0K6MB55/324-549  DR GENE3D; 70a5b5d63b45970894dcbefe7893f173/324-549; 
#=GS A0A0K6MB55/324-549  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS A0A0K6KQW7/303-498  AC A0A0K6KQW7
#=GS A0A0K6KQW7/303-498  OS Bacillus subtilis
#=GS A0A0K6KQW7/303-498  DE RNA polymerase-associated protein RapA
#=GS A0A0K6KQW7/303-498  DR GENE3D; b05e9724973263926f46de8492cc4b44/303-498; 
#=GS A0A0K6KQW7/303-498  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GF TC 454.4 3.3E-141
#=GF SQ 19
A0A0M0L3P7/271-551          QRHVETVPIEFSPSEQALYDEISSLKEGINKPASMFSIMTLQRECCSSREAVYMTLKKMLDQTEKQVPAIDEHTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGKLDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQQP
G4NQ81/271-551              QRHVETVPIEFSPSEQALYDEISSLKEGINKPASMFSIMTLQRECCSSREAVYMTLKKMLDQTEKQVPAIDEHTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGKLDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQQP
P54509/325-548              ------------------------------------------------------TLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGELDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKK---
S6FMQ6/305-497              -----------------------------------FSIMTLQRECCSSREAVYMTLKKMLDQKDKQAPAFDDQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFE-----------------------------------------------------
A0A0K6LZE9/108-388          QRHVETVPIEFSPSEQALYDEISSLKEGINKPASMFSIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEHTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGKLDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQQP
A0A1A5V8N4/274-543          ----ETVPITFSPTEQALYDDIAALKNGTEKPTSAFSIMTLQRECCSSREAVYMTLKKMLDQKEQKAPAFDEQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVVGELDDILTKIKVNNFEDHLHDILCHSLTEEEMRIKMDNLTSFL-------
A0A0A0TTP2/274-543          ----ETVPITFSPTEQALYDDIAALKNGTEKPTSAFSIMTLQRECCSSREAVYMTLKKMLDQKEQKAPAFDEQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVVGELDDILTKIKVNNFEDHLHDILCHSLTEEEMRIKMDNLTSFL-------
L8AK08/325-548              ------------------------------------------------------TLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGELDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKK---
A0A1B2BD40/325-548          ------------------------------------------------------TLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGELDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKK---
A0A162S7T0/325-548          ------------------------------------------------------TLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGELDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKK---
A0A0K6LDB7/274-542          ----ETVPITFSPTEQALYDDIAALKNGTEKPASAFSIMTLQRECCSSREAVYMTLKKMLDQKDKHAPAFDDQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVVGELDDILTKIKVSNFEDHLHDILCHSLTEEEMRIKMDNLTSF--------
A0A0E1LRL3/274-542          ----ETVPITFSPTEQALYDDIAALKNGTEKPASAFSIMTLQRECCSSREAVYMTLKKMLDQKDKHAPAFDDQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVVGELDDILTKIKVSNFEDHLHDILCHSLTEEEMRIKMDNLTSF--------
A0A0K6KE05/325-549          ------------------------------------------------------TLKKMLDQKEKQAPAIDEHTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGKLDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQ--
A0A1L3SIP2/325-549          ------------------------------------------------------TLKKMLDQKEKQAPAIDEHTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGKLDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQ--
E1UKZ4/331-604              KRHVETVPITFSPTEQALYDDIAALKNGTEKPTSAFSIMTLQRECCSSREAVYMTLKKMLDQKEQKAPAFDEQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFENVVGELDDILTKIKVNNFEDHLHDILCHSLTEEEMRIKMDNLTSFL-------
A0A0K6LGQ0/305-497          -----------------------------------FSIMTLQRECCSSREAVYMTLKKMLDQKDKQAPAFDEQTIANLMDRINQVTQNSKAIQVVDLIQKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFE-----------------------------------------------------
A0A1A0D2K7/305-497          -----------------------------------FSIMTLQRECCSSREAVYMTLKKMLDQKDKQAPAFDEQTIANLMDRINQVTQNSKAIQVVDLIKKINDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKVQVLIATEAGGEGINLQFCNHIINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYDKIHLFE-----------------------------------------------------
A0A0K6MB55/324-549          -----------------------------------------------------MTLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGELDDILTKIQVNNFEEHLHDILYHSATEEEMKIKMDNLTSFLSYKKQ--
A0A0K6KQW7/303-498          --------------------------------ASMFSIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEHTISVLIERINQVTQNSKALQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFE-----------------------------------------------------
#=GC scorecons              00001111101110111111010011010011111333333333333333333499999999777779959759965968999999999996999999699699999999999999999999999999999999999999999999999997999999999999999999996999999999999999999999999999999999999999999999999799999934443444444443434443444444344244444344444444431111000
#=GC scorecons_70           ______________________________________________________***************_**_**__*******************************************************************************************************************************************************_____________________________________________________
#=GC scorecons_80           ______________________________________________________***********_***_**_**__*_************_******_**_**********************************************************************_************************************************_******_____________________________________________________
#=GC scorecons_90           ______________________________________________________********_____**_*__**__*_************_******_**_*************************************************_********************_************************************************_******_____________________________________________________
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