# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/28231
#=GF DE Type IV secretion system protein VirD4
#=GF AC 3.40.50.300/FF/28231
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 27.295
#=GS P18594/288-539      AC P18594
#=GS P18594/288-539      OS Agrobacterium fabrum str. C58
#=GS P18594/288-539      DE Protein VirD4
#=GS P18594/288-539      DR GENE3D; 37931ea5958b77bae16f3c36f51c1fc1/288-539; 
#=GS P18594/288-539      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium fabrum; 
#=GS P18594/288-539      DR GO; GO:0005515; GO:0030255; GO:0043684; 
#=GS P13464/288-539      AC P13464
#=GS P13464/288-539      OS Agrobacterium rhizogenes
#=GS P13464/288-539      DE Protein VirD4
#=GS P13464/288-539      DR GENE3D; 1f5e3ace4261c83ff29bb7d9efd695d7/288-539; 
#=GS P13464/288-539      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium rhizogenes; 
#=GS A0A071HWI6/288-539  AC A0A071HWI6
#=GS A0A071HWI6/288-539  OS Agrobacterium rhizogenes
#=GS A0A071HWI6/288-539  DE Type IV secretion system protein VirD4
#=GS A0A071HWI6/288-539  DR GENE3D; 1f5e3ace4261c83ff29bb7d9efd695d7/288-539; 
#=GS A0A071HWI6/288-539  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium rhizogenes; 
#=GS Q8VT85/306-535      AC Q8VT85
#=GS Q8VT85/306-535      OS Agrobacterium tumefaciens
#=GS Q8VT85/306-535      DE VirD4
#=GS Q8VT85/306-535      DR GENE3D; a4f8a7fbb1cce9ddc7f6859ba2c28b64/306-535; 
#=GS Q8VT85/306-535      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium tumefaciens; 
#=GS A0A109JN58/306-540  AC A0A109JN58
#=GS A0A109JN58/306-540  OS Rhizobium sp. BR10423
#=GS A0A109JN58/306-540  DE Type IV secretion system protein VirD4
#=GS A0A109JN58/306-540  DR GENE3D; ba1148328e495d0dae7b99dec7acc66c/306-540; 
#=GS A0A109JN58/306-540  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium sp. BR10423; 
#=GS K0Q3Z9/306-540      AC K0Q3Z9
#=GS K0Q3Z9/306-540      OS Rhizobium mesoamericanum STM3625
#=GS K0Q3Z9/306-540      DE Type IV secretion system-coupling protein virD4
#=GS K0Q3Z9/306-540      DR GENE3D; ba1148328e495d0dae7b99dec7acc66c/306-540; 
#=GS K0Q3Z9/306-540      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium mesoamericanum; 
#=GS A0A0F4FJI5/288-539  AC A0A0F4FJI5
#=GS A0A0F4FJI5/288-539  OS Agrobacterium tumefaciens
#=GS A0A0F4FJI5/288-539  DE Protein virD4
#=GS A0A0F4FJI5/288-539  DR GENE3D; 37931ea5958b77bae16f3c36f51c1fc1/288-539; 
#=GS A0A0F4FJI5/288-539  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium tumefaciens; 
#=GS Q2K2F8/306-540      AC Q2K2F8
#=GS Q2K2F8/306-540      OS Rhizobium etli CFN 42
#=GS Q2K2F8/306-540      DE Transport secretion system IV, VirD4 protein
#=GS Q2K2F8/306-540      DR GENE3D; e32c7784c3acd0e95037a2e0b63f9df6/306-540; 
#=GS Q2K2F8/306-540      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium etli; 
#=GS A0A081CZV7/337-587  AC A0A081CZV7
#=GS A0A081CZV7/337-587  OS Rhizobium rubi NBRC 13261
#=GS A0A081CZV7/337-587  DE Type IV secretory pathway VirD4 component
#=GS A0A081CZV7/337-587  DR GENE3D; c6f4594cfc62f1eae6fff2deeed23d19/337-587; 
#=GS A0A081CZV7/337-587  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium rubi; 
#=GS P09817/284-540      AC P09817
#=GS P09817/284-540      OS Agrobacterium tumefaciens
#=GS P09817/284-540      DE Protein VirD4
#=GS P09817/284-540      DR GENE3D; be31071e8cf3506241460798b38fcb4c/284-540; 
#=GS P09817/284-540      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium tumefaciens; 
#=GS B9K401/306-536      AC B9K401
#=GS B9K401/306-536      OS Agrobacterium vitis S4
#=GS B9K401/306-536      DE VirA/G regulated protein
#=GS B9K401/306-536      DR GENE3D; ce665ab590548ccc69b6de5bb78501ee/306-536; 
#=GS B9K401/306-536      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Agrobacterium; Agrobacterium vitis; 
#=GF TC 523.4 2.9E-161
#=GF SQ 11
P18594/288-539              ----EESRNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRL-
P13464/288-539              ----EESRNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERYEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALSGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGEYTFQARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDKSEIVLIKGQPPLKLRKVRYYSDRMLRRL-
A0A071HWI6/288-539          ----EESRNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERYEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALSGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGEYTFQARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDKSEIVLIKGQPPLKLRKVRYYSDRMLRRL-
Q8VT85/306-535              ----------------------DTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRLKRTCIYLCVSPNDLEVIAPLMRLFFQQVVSILQRSLPTTDERHEVLFLLDEFKHLGKLEAVETAITTMAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFQARSTSYSQARMFDHNIQISDQGAPLLRAEQVRLLDDNYQIVLIKGQPPLKLRKIRYYSDLI-----
A0A109JN58/306-540          ----------------------DTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVHDLRRKRTCVYLCVSPNDLEVVAPLMRLFFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGIQVFMATADDETPTYISKAIGEYTFQARSTSYSQARMFDHNIQISEQGAPLLRPEQMRLLDDQSEIVLIKGQPPLKLRKVRYYSDRTLKRVF
K0Q3Z9/306-540              ----------------------DTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVHDLRRKRTCVYLCVSPNDLEVVAPLMRLFFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGIQVFMATADDETPTYISKAIGEYTFQARSTSYSQARMFDHNIQISEQGAPLLRPEQMRLLDDQSEIVLIKGQPPLKLRKVRYYSDRTLKRVF
A0A0F4FJI5/288-539          ----EESRNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGIYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRL-
Q2K2F8/306-540              ----------------------DTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSIYDLRRRKTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERYEVLFLLDEFRHLGKLEAIETAITTIAGYNGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGEYTFKARSTSYNQTRMFDQNIQISDQGAPLLRPEQVRLIDDRNEIILIKGHPPLKLRKVQYYSDRALKRIF
A0A081CZV7/337-587          -----ESRNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCVYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDNNEIVLIKGHPPLKLRKVRYYSDRMLRRL-
P09817/284-540              AQLAEESLNKEAQRIFDNMAGNDTKILTSYTSVLGDGGLNLWADPLIKAATSRSDFSVYDLRRKKTCIYLCVSPNDLEVLAPLMRLLFQQLVSILQRSLPGKDECHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDDAGKQNFLSNTGVQVFMATADDETPTYISKAIGEYTFKARSTSYSQASMFDHNIQISDQGAALLRPEQVRLLDDQSEIVLIKGRPPLKLRKVQYYSDRTLKRLF
B9K401/306-536              ---------------------NDTKILTSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKKTCIYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPLGDERHDVLFLLDEFKHLGKLEAVETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFQARSTSYSQARMFDHNIQISEQGAPLLRAEQVRLLDDDHEIVLIKGQPPLKLRKVRYYSDLI-----
#=GC scorecons              00001111111111111111129999999999999999999999998999999999987999787997999999999997999999699979999999996699778999999998999999979999998999799999999999997979979999999999979999999999999999999979996999999797799989999979997999699799799447989999699999998799995454531
#=GC scorecons_70           ______________________******************************************************************************__*****************************************************************************************************************************__*******_*************_______
#=GC scorecons_80           ______________________****************************************************************_*************__************************************************************************************_***_***************************_********__*******_*************_______
#=GC scorecons_90           ______________________************************************_***_*_**_***********_******_***_*********__**__*****************_******_***_*************_*_**_***********_********************_***_******_*__*********_***_***_**_**_**___******_********_****_______
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