# STOCKHOLM 1.0 #=GF ID 3.40.50.300/FF/252306 #=GF DE ATP-dependent RNA helicase SrmB #=GF AC 3.40.50.300/FF/252306 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 12.195 #=GS Q9KU63/217-423 AC Q9KU63 #=GS Q9KU63/217-423 OS Vibrio cholerae O1 biovar El Tor str. N16961 #=GS Q9KU63/217-423 DE ATP-dependent RNA helicase SrmB #=GS Q9KU63/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS Q9KU63/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS Q9KU63/217-423 DR GO; GO:0004004; GO:0016070; #=GS Q9KU63/217-423 DR EC; 3.6.4.13; #=GS A0A0N8VC59/217-421 AC A0A0N8VC59 #=GS A0A0N8VC59/217-421 OS Vibrio metoecus #=GS A0A0N8VC59/217-421 DE ATP-dependent RNA helicase SrmB #=GS A0A0N8VC59/217-421 DR GENE3D; 03526768f39d5bb8cde3c68dad04b145/217-421; #=GS A0A0N8VC59/217-421 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio metoecus; #=GS A0A0N8VC59/217-421 DR EC; 3.6.4.13; #=GS C2HUV8/217-423 AC C2HUV8 #=GS C2HUV8/217-423 OS Vibrio albensis VL426 #=GS C2HUV8/217-423 DE ATP-dependent RNA helicase SrmB #=GS C2HUV8/217-423 DR GENE3D; 6180093234a6d9496b0c945329f1a73c/217-423; #=GS C2HUV8/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio albensis; #=GS C2HUV8/217-423 DR EC; 3.6.4.13; #=GS A0A085PZ82/217-423 AC A0A085PZ82 #=GS A0A085PZ82/217-423 OS Vibrio cholerae #=GS A0A085PZ82/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A085PZ82/217-423 DR GENE3D; 6180093234a6d9496b0c945329f1a73c/217-423; #=GS A0A085PZ82/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A085PZ82/217-423 DR EC; 3.6.4.13; #=GS A0A0H3AKK0/217-423 AC A0A0H3AKK0 #=GS A0A0H3AKK0/217-423 OS Vibrio cholerae O395 #=GS A0A0H3AKK0/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A0H3AKK0/217-423 DR GENE3D; 6180093234a6d9496b0c945329f1a73c/217-423; #=GS A0A0H3AKK0/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H3AKK0/217-423 DR EC; 3.6.4.13; #=GS D7HD44/217-423 AC D7HD44 #=GS D7HD44/217-423 OS Vibrio cholerae RC385 #=GS D7HD44/217-423 DE ATP-dependent RNA helicase SrmB #=GS D7HD44/217-423 DR GENE3D; 6180093234a6d9496b0c945329f1a73c/217-423; #=GS D7HD44/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS D7HD44/217-423 DR EC; 3.6.4.13; #=GS C9E5Y0/217-423 AC C9E5Y0 #=GS C9E5Y0/217-423 OS Vibrio fluvialis #=GS C9E5Y0/217-423 DE ATP-dependent RNA helicase SrmB #=GS C9E5Y0/217-423 DR GENE3D; 6180093234a6d9496b0c945329f1a73c/217-423; #=GS C9E5Y0/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio fluvialis; #=GS C9E5Y0/217-423 DR EC; 3.6.4.13; #=GS A0A0H5ZUV2/217-423 AC A0A0H5ZUV2 #=GS A0A0H5ZUV2/217-423 OS Vibrio cholerae #=GS A0A0H5ZUV2/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A0H5ZUV2/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS A0A0H5ZUV2/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H5ZUV2/217-423 DR EC; 3.6.4.13; #=GS A0A0X1L3E3/217-423 AC A0A0X1L3E3 #=GS A0A0X1L3E3/217-423 OS Vibrio cholerae MO10 #=GS A0A0X1L3E3/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A0X1L3E3/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS A0A0X1L3E3/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0X1L3E3/217-423 DR EC; 3.6.4.13; #=GS A0A0H3QEN7/217-423 AC A0A0H3QEN7 #=GS A0A0H3QEN7/217-423 OS Vibrio cholerae B33 #=GS A0A0H3QEN7/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A0H3QEN7/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS A0A0H3QEN7/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H3QEN7/217-423 DR EC; 3.6.4.13; #=GS C3LSR5/217-423 AC C3LSR5 #=GS C3LSR5/217-423 OS Vibrio cholerae M66-2 #=GS C3LSR5/217-423 DE ATP-dependent RNA helicase SrmB #=GS C3LSR5/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS C3LSR5/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS C3LSR5/217-423 DR EC; 3.6.4.13; #=GS A0A0K9UTT8/217-423 AC A0A0K9UTT8 #=GS A0A0K9UTT8/217-423 OS Vibrio cholerae 2740-80 #=GS A0A0K9UTT8/217-423 DE ATP-dependent RNA helicase SrmB #=GS A0A0K9UTT8/217-423 DR GENE3D; 776e7c2b29fbfc22485154884bdfd0eb/217-423; #=GS A0A0K9UTT8/217-423 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0K9UTT8/217-423 DR EC; 3.6.4.13; #=GS D0IDA8/217-416 AC D0IDA8 #=GS D0IDA8/217-416 OS Vibrio sp. RC586 #=GS D0IDA8/217-416 DE ATP-dependent RNA helicase SrmB #=GS D0IDA8/217-416 DR GENE3D; 8fe4b745bb50a8b4f83a5ae552f08dea/217-416; #=GS D0IDA8/217-416 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; #=GS D0IDA8/217-416 DR EC; 3.6.4.13; #=GS A0A0Q0Q339/217-421 AC A0A0Q0Q339 #=GS A0A0Q0Q339/217-421 OS Vibrio metoecus #=GS A0A0Q0Q339/217-421 DE ATP-dependent RNA helicase SrmB #=GS A0A0Q0Q339/217-421 DR GENE3D; a5a9e192aed3a9021a1fb640e50cc7d5/217-421; #=GS A0A0Q0Q339/217-421 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio metoecus; #=GS A0A0Q0Q339/217-421 DR EC; 3.6.4.13; #=GS A0A0H6YM55/223-429 AC A0A0H6YM55 #=GS A0A0H6YM55/223-429 OS Vibrio cholerae #=GS A0A0H6YM55/223-429 DE ATP-dependent RNA helicase SrmB #=GS A0A0H6YM55/223-429 DR GENE3D; b1aa0776374f87e4015f058ed9afa646/223-429; #=GS A0A0H6YM55/223-429 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H6YM55/223-429 DR EC; 3.6.4.13; #=GS A0A085PJU5/217-422 AC A0A085PJU5 #=GS A0A085PJU5/217-422 OS Vibrio cholerae #=GS A0A085PJU5/217-422 DE ATP-dependent RNA helicase SrmB #=GS A0A085PJU5/217-422 DR GENE3D; b16c01f4ad6baf85178732a001c5c16b/217-422; #=GS A0A085PJU5/217-422 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A085PJU5/217-422 DR EC; 3.6.4.13; #=GS D2YKY0/217-416 AC D2YKY0 #=GS D2YKY0/217-416 OS Vibrio mimicus VM573 #=GS D2YKY0/217-416 DE ATP-dependent RNA helicase SrmB #=GS D2YKY0/217-416 DR GENE3D; faf866bb03c3795f6dd9347bafda458f/217-416; #=GS D2YKY0/217-416 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus; #=GS D2YKY0/217-416 DR EC; 3.6.4.13; #=GS D2YBN9/217-416 AC D2YBN9 #=GS D2YBN9/217-416 OS Vibrio mimicus VM603 #=GS D2YBN9/217-416 DE ATP-dependent RNA helicase SrmB #=GS D2YBN9/217-416 DR GENE3D; faf866bb03c3795f6dd9347bafda458f/217-416; #=GS D2YBN9/217-416 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus; #=GS D2YBN9/217-416 DR EC; 3.6.4.13; #=GS A0A085TI73/217-416 AC A0A085TI73 #=GS A0A085TI73/217-416 OS Vibrio cholerae #=GS A0A085TI73/217-416 DE ATP-dependent RNA helicase SrmB #=GS A0A085TI73/217-416 DR GENE3D; faf866bb03c3795f6dd9347bafda458f/217-416; #=GS A0A085TI73/217-416 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A085TI73/217-416 DR EC; 3.6.4.13; #=GS A0A1D8SDD0/217-416 AC A0A1D8SDD0 #=GS A0A1D8SDD0/217-416 OS Vibrio mimicus #=GS A0A1D8SDD0/217-416 DE ATP-dependent RNA helicase SrmB #=GS A0A1D8SDD0/217-416 DR GENE3D; afa5df553cc4625ce58ccd535655494b/217-416; #=GS A0A1D8SDD0/217-416 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus; #=GS A0A1D8SDD0/217-416 DR EC; 3.6.4.13; #=GF TC 450.3 2.2E-139 #=GF SQ 20 Q9KU63/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0N8VC59/217-421 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKPADKGAVKKKATSKP--KAAKKKTAKKA C2HUV8/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A085PZ82/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0H3AKK0/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAATKA D7HD44/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAATKA C9E5Y0/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0H5ZUV2/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0X1L3E3/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0H3QEN7/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA C3LSR5/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A0K9UTT8/217-423 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA D0IDA8/217-416 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKATDKGTAKKKTAS--KARTAKKK----- A0A0Q0Q339/217-421 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKPADKGAVKKKATSKP--KAAKKKAAKKA A0A0H6YM55/223-429 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATKA A0A085PJU5/217-422 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRSELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDSKKTADKDVVKKKSTSKPKAKSTKKKAAPK- D2YKY0/217-416 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKATDKGTAKKKTAS--KAKTAKKK----- D2YBN9/217-416 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKATDKGTAKKKTAS--KAKTAKKK----- A0A085TI73/217-416 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKATDKGTAKKKTAS--KAKTAKKK----- A0A1D8SDD0/217-416 ERKKISQWYHRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKVTDKGTAKKKTAS--KAKTAKKK----- #=GC scorecons 999999999999999999999999999999999999999999999998999999999999999999999999969999969999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999995995699866999769336686699923232 #=GC scorecons_70 *************************************************************************_*****_************************************************************************************************_**_****__******__***_****_____ #=GC scorecons_80 *************************************************************************_*****_************************************************************************************************_**__***__****_*____*__***_____ #=GC scorecons_90 *************************************************************************_*****_************************************************************************************************_**__***__***__*____*__***_____ //