# STOCKHOLM 1.0 #=GF ID 3.40.50.300/FF/204774 #=GF DE DNA repair protein RAD50 #=GF AC 3.40.50.300/FF/204774 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 92.585 #=GS E9PM98/3-102 AC E9PM98 #=GS E9PM98/3-102 OS Homo sapiens #=GS E9PM98/3-102 DE DNA repair protein RAD50 #=GS E9PM98/3-102 DR GENE3D; cb5c23bec2d7e5cf1ba4030aba8a90d4/3-102; #=GS E9PM98/3-102 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; #=GS Q99M38/2-48 AC Q99M38 #=GS Q99M38/2-48 OS Mus musculus #=GS Q99M38/2-48 DE Rad50 protein #=GS Q99M38/2-48 DR GENE3D; be85bf95c0ea25b695c46321b0b30229/2-48; #=GS Q99M38/2-48 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS W4YJN5/3-135 AC W4YJN5 #=GS W4YJN5/3-135 OS Strongylocentrotus purpuratus #=GS W4YJN5/3-135 DE Uncharacterized protein #=GS W4YJN5/3-135 DR GENE3D; 9ef780366bff6d17328a4e16c6b1f175/3-135; #=GS W4YJN5/3-135 DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; #=GS T1EJQ3/3-137 AC T1EJQ3 #=GS T1EJQ3/3-137 OS Helobdella robusta #=GS T1EJQ3/3-137 DE Uncharacterized protein #=GS T1EJQ3/3-137 DR GENE3D; c54ec0dd8f68a340c87ff2392b11aa80/3-137; #=GS T1EJQ3/3-137 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Rhynchobdellida; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS A0A093Q6Z7/3-283 AC A0A093Q6Z7 #=GS A0A093Q6Z7/3-283 OS Manacus vitellinus #=GS A0A093Q6Z7/3-283 DE DNA repair protein RAD50 #=GS A0A093Q6Z7/3-283 DR GENE3D; 051658bd554123d202271754c3f905ab/3-283; #=GS A0A093Q6Z7/3-283 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Aves; Neognathae; Passeriformes; Pipridae; Manacus; Manacus vitellinus; #=GS W5LKZ2/1-158 AC W5LKZ2 #=GS W5LKZ2/1-158 OS Astyanax mexicanus #=GS W5LKZ2/1-158 DE Uncharacterized protein #=GS W5LKZ2/1-158 DR GENE3D; 0ca017bf22c6b4fa63486bd1d3f3d948/1-158; #=GS W5LKZ2/1-158 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Characiphysae; Characiformes; Characoidei; Characidae; Astyanax; Astyanax mexicanus; #=GS A0A1D6Q2M5/4-284 AC A0A1D6Q2M5 #=GS A0A1D6Q2M5/4-284 OS Zea mays #=GS A0A1D6Q2M5/4-284 DE Uncharacterized protein #=GS A0A1D6Q2M5/4-284 DR GENE3D; 0ed45c9bec6fa8cb7a3d7957d6369cf8/4-284; #=GS A0A1D6Q2M5/4-284 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0M8ZVH2/3-246 AC A0A0M8ZVH2 #=GS A0A0M8ZVH2/3-246 OS Melipona quadrifasciata #=GS A0A0M8ZVH2/3-246 DE DNA repair protein RAD50 #=GS A0A0M8ZVH2/3-246 DR GENE3D; 24d62609919b9c08e7a4b058e3d01e65/3-246; #=GS A0A0M8ZVH2/3-246 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Meliponinae; Melipona; Melipona quadrifasciata; #=GS A0A1E5VXV6/3-137 AC A0A1E5VXV6 #=GS A0A1E5VXV6/3-137 OS Dichanthelium oligosanthes #=GS A0A1E5VXV6/3-137 DE DNA repair protein RAD50 #=GS A0A1E5VXV6/3-137 DR GENE3D; 2819ea1be4cce5fef91b1221746b0539/3-137; #=GS A0A1E5VXV6/3-137 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Dichantheliinae; Dichanthelium; Dichanthelium oligosanthes; #=GS L8Y591/2-47 AC L8Y591 #=GS L8Y591/2-47 OS Tupaia chinensis #=GS L8Y591/2-47 DE DNA repair protein RAD50 #=GS L8Y591/2-47 DR GENE3D; 4c3fc066b47a4bcf5143c27ff84aaa58/2-47; #=GS L8Y591/2-47 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Scandentia; Tupaiidae; Tupaia; Tupaia chinensis; #=GS S9WZU9/41-202 AC S9WZU9 #=GS S9WZU9/41-202 OS Camelus ferus #=GS S9WZU9/41-202 DE Uncharacterized protein #=GS S9WZU9/41-202 DR GENE3D; 4f4474891ad6174a576d0389233992d5/41-202; #=GS S9WZU9/41-202 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Tylopoda; Camelidae; Camelus; Camelus ferus; #=GS W5LKX5/3-95 AC W5LKX5 #=GS W5LKX5/3-95 OS Astyanax mexicanus #=GS W5LKX5/3-95 DE Uncharacterized protein #=GS W5LKX5/3-95 DR GENE3D; 5ab134a5ca321f08e6b0548b1fc670a0/3-95; #=GS W5LKX5/3-95 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Characiphysae; Characiformes; Characoidei; Characidae; Astyanax; Astyanax mexicanus; #=GS G5E2F1/3-193 AC G5E2F1 #=GS G5E2F1/3-193 OS Hymenochirus curtipes #=GS G5E2F1/3-193 DE Putative rad50 protein #=GS G5E2F1/3-193 DR GENE3D; 33d42448cc7f2ef80323d09244bdfa29/3-193; #=GS G5E2F1/3-193 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Pipinae; Hymenochirus; Hymenochirus curtipes; #=GS A0A0S7MGG5/21-105 AC A0A0S7MGG5 #=GS A0A0S7MGG5/21-105 OS Poeciliopsis prolifica #=GS A0A0S7MGG5/21-105 DE RAD50 #=GS A0A0S7MGG5/21-105 DR GENE3D; ab0fdc899ec19736d96f1911e388a7f5/21-105; #=GS A0A0S7MGG5/21-105 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Atherinomorphae; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae; Poeciliinae; Poeciliopsis; Poeciliopsis prolifica; #=GS H3A560/1-180 AC H3A560 #=GS H3A560/1-180 OS Latimeria chalumnae #=GS H3A560/1-180 DE Uncharacterized protein #=GS H3A560/1-180 DR GENE3D; a206adeb3ad5f4c34326cb2d7bc2b369/1-180; #=GS H3A560/1-180 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Coelacanthiformes; Coelacanthidae; Latimeria; Latimeria chalumnae; #=GS H2ZS42/2-44 AC H2ZS42 #=GS H2ZS42/2-44 OS Latimeria chalumnae #=GS H2ZS42/2-44 DE Uncharacterized protein #=GS H2ZS42/2-44 DR GENE3D; b15c674cf3e0aedf91f6fb77a2f2c32a/2-44; #=GS H2ZS42/2-44 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Coelacanthiformes; Coelacanthidae; Latimeria; Latimeria chalumnae; #=GS A0A1A6GH59/3-226 AC A0A1A6GH59 #=GS A0A1A6GH59/3-226 OS Neotoma lepida #=GS A0A1A6GH59/3-226 DE Uncharacterized protein #=GS A0A1A6GH59/3-226 DR GENE3D; dabd7fc5b089565bf061b3168e35855a/3-226; #=GS A0A1A6GH59/3-226 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Neotominae; Neotoma; Neotoma lepida; #=GS A0A087TSK1/3-117 AC A0A087TSK1 #=GS A0A087TSK1/3-117 OS Stegodyphus mimosarum #=GS A0A087TSK1/3-117 DE DNA repair protein RAD50 #=GS A0A087TSK1/3-117 DR GENE3D; e9d7f7ddd0a0a33555eccfe6392779db/3-117; #=GS A0A087TSK1/3-117 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Eresoidea; Eresidae; Stegodyphus; Stegodyphus mimosarum; #=GF TC 91.9 2.2E-29 #=GF SQ 18 E9PM98/3-102 -RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KGNTFVHDPKVAQETDVRAQIRLQ-FRDVNGELIAVQRSMA----------------------------------------------------------------W---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Q99M38/2-48 SRIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTVSPE-----------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- W4YJN5/3-135 -SVEELSIQGIRGFGQDDGDRQVIQFFHPLTIIMGQNGAGKT-----------------------------VAHETEVKAQVKLC-FKDKAGKDVVVTRSMVATKKEKRIEFKSLEGTIERVDNFGKKP-GL--KCAEIDRAMVESLGVSKQVLSNVIFCHQEDANW---------------------------------------------------------------------------------------------------------------------------------------------------------------------- T1EJQ3/3-137 -YIDKMVIQGIRSFGPGDENRGMIHFFMPLTLILGPNGTGKT-----------------------------VARETEVKAQVRLQ-FHDVRGDKCLAQRSVVGTQKKNKVEFKTLDGLIQKKLSNGETV-TLNSRCAETDKEMISLLGVSKPILENVIFCHQEDSNW---------------------------------------------------------------------------------------------------------------------------------------------------------------------- A0A093Q6Z7/3-283 -RIEKMSILGVRSFGVEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KGKTFVHDPKVRVVVTKFDVL---LLKELAGNLFGDFVSLCS-------------------GRNGEKIGSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIFSATRYIKALEA-LRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLA----ASKENVKTIESQLEPLKSSLAA-VEQNLTKVMRLDNDVKALESRRQQMEKD-NQDLQQKMEKVFQGTDE--------------------- W5LKZ2/1-158 ----------------------------------------------------------------------------------------------------------------------------------------------MISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIFSATRYIKVLET-LRQLRLKQSNTVKSCQMELKYLKQNKEKAQEIKDLLSTKEGQLA----ASKESVQRIESQIDPLENRLND-IDDNLGKVMKLDNDIKALDSRKKQMEDD-NRELEEKMEQVF-------------------------- A0A1D6Q2M5/4-284 --VDKMLIKGIRSF--DPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSRSGHTFVHDPKVAGETETKGQIKLR-FKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTINPHTGEL-REN------------------------IAQDQEKSDASKSQMEQLKEK---ICGTEREILQMETSLDELRRLQG--------------QIDIKATERSTLLTQQHEKLA----ALSEENEDTDEELMEWQTKFEERIALLETKISKLVRDMDDEASYSSVLSKQ-NSELTHEIGKLQAEADAHLTMKHERDSDIKNICTKHNL A0A0M8ZVH2/3-246 -RIRRLSIRGIRNFG-DTNDEAMIRFSRPLTLILGPNGTGKTTIIEALKFATCGEFPPGSDRGKSFIHDPVLSATSSVRGVVKAE-II---------------------------------------VV-SLTNRCANVDAELTLAMGVSKPILDYVIFCHQEDLNWPFQDGKKLKEKFDEIFDSARFNKALESIMKQIKD--------MNQTMYVLKEQKQNCQHIVNDAIDKETKLE----DNKNRLECSKSKIEELNKELEP-VLQKLKKFEKLDADYKDLQNEESNVLMNINNNFS--------------------------------- A0A1E5VXV6/3-137 -TVDKMLIKGIRSF--DPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSRSGHTFVHDPKVAGETETKGQIKLR-FKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTINPHTGEV-CTS------------------------FF-------------------------------------------------------------------------------------------------------------------------------FSSV-----N------------------------------------- L8Y591/2-47 SRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTVAQE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- S9WZU9/41-202 -WIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTVAQE-----------------------------TDVRAQIRLQ-FRDVNGELVAVQRSMV---------------------------------------------------------CTQKSK-------KTEFKTLEGVITRTKYIKALET-LRQVRQTQGQKIKECQTELKYLKQNKEKACEIRDQITSKEAQLT----SSKEIVKSYENELDSLE-----------------------------------------------------------------------VI W5LKX5/3-95 -KIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPGS-KGNTFVHDPKVRGLLNSSSDI----FK------------------------------------------------------------------------------------------------------------------------KCQ-------------------------------------------------------VANELNNI----------------------------------------------------------- G5E2F1/3-193 --------------------------------------------------------------------DPKVAHETDVRAQIRLQ-LKDVNGERVAVHRSMLCTQKGKSMEFKSLEGVITRV-KHGEKV-SLSTKCAEMDKEMISALGVSAAVLNNAIFCHQEDSNWPLSEGRQLKVK-DEIFSATRYIKALET-LRQVRH---------QREMDRVNKESQRLNREKGELLVQQGRLQLEADQHQQEIRKRDSLIKTLAAQLE-------------------FDGFKQAPF----------------------------------------- A0A0S7MGG5/21-105 -KIDKMSILGVRSFGIEDKDKQIISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPGS-KGGAFVHDPKDAHETDVRAQIRLL-FS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- H3A560/1-180 ---------------------------------------------------------------------------------------------------------------------------RHGEKV-SLSSKCAEIDREMISALGVSKAVLNSVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALDT-LRQVRQKQGQRVRECQTELRYLKQNKEKAHEIQDQLTSKEAQLT----ASKENVKTINSQIDPLTKRLDE-IERSLTTVMKIDNDIKALDSRKEQMEQD-NQELEQKIETVFQGTD---------------------- H2ZS42/2-44 SKIDRMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- A0A1A6GH59/3-226 -RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KGNTFVHDPKS---IVVKILVKLC-LN----------CSFFY-------------------YKHGENV-SISSKCAEIDREMISCLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALDT-LRQVRQTQGQK------------------------------------------------------NRLKE-IEHNLSKIMRLDNEIKALDSRKKQMEKD-NSELEQKMEKVFQGTDEQL----------------NDL A0A087TSK1/3-117 -VIEKMSIMGIRSFGPEDSNRQVIEFFKPLTLILGPNGSGKTTIIECLRYMTTGDPPPNSDRGGSFVLDPKFAGEQEVKGQVKLQ-FRDVLGKKVIVTRSLLASQAVKKITLKTLEG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ #=GC scorecons 025445453545454244344345255255544455554555222311110111111111011011112222211222222322103211021010001210000000000000000000000011101011101111010111101111101111122222211221011110110101111111111111110111110000000000100000000000100000000000000100000000000000000000100010000000000000000000000000000000010000000000000000000000000000000000000 #=GC scorecons_70 _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ #=GC scorecons_80 _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ #=GC scorecons_90 _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ //