# STOCKHOLM 1.0
#=GF ID 3.30.420.10/FF/45381
#=GF DE Probable Pol polyprotein
#=GF AC 3.30.420.10/FF/45381
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 44.961
#=GS P04026/393-544      AC P04026
#=GS P04026/393-544      OS Golden hamster intracisternal A-particle H18
#=GS P04026/393-544      DE Putative Pol polyprotein
#=GS P04026/393-544      DR GENE3D; 0091df83cbba4f7c4be17a9221cc318d/393-544; 
#=GS P04026/393-544      DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; 
#=GS P04026/393-544      DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q61706/12-155       AC Q61706
#=GS Q61706/12-155       OS Mus musculus
#=GS Q61706/12-155       DE RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 106
#=GS Q61706/12-155       DR GENE3D; 33e2e2303ae02d9d6486d3f2f3946ff2/12-155; 
#=GS Q61706/12-155       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q7TQ37/350-498      AC Q7TQ37
#=GS Q7TQ37/350-498      OS Mus musculus
#=GS Q7TQ37/350-498      DE Pol protein
#=GS Q7TQ37/350-498      DR GENE3D; 54579fd877e486ea479c0ab6d9533f35/350-498; 
#=GS Q7TQ37/350-498      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q1W5W7/612-760      AC Q1W5W7
#=GS Q1W5W7/612-760      OS Mus musculus
#=GS Q1W5W7/612-760      DE Putative gag-pol protein
#=GS Q1W5W7/612-760      DR GENE3D; 897f83e2a77ee4d1b7269c1fa083d800/612-760; 
#=GS Q1W5W7/612-760      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS B7U9H2/495-619      AC B7U9H2
#=GS B7U9H2/495-619      OS Mus musculus
#=GS B7U9H2/495-619      DE LCMV-GP/IAP-pol fusion protein
#=GS B7U9H2/495-619      DR GENE3D; e2034d489843b16821ac47f5c32e1cde/495-619; 
#=GS B7U9H2/495-619      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P12894/359-507      AC P12894
#=GS P12894/359-507      OS Mouse intracisternal A-particle MIAIL3
#=GS P12894/359-507      DE Probable Pol polyprotein
#=GS P12894/359-507      DR GENE3D; 4dc8c3e8ea7df6b0e5ba63034cae171b/359-507; 
#=GS P12894/359-507      DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; 
#=GS P12894/359-507      DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P11368/440-588      AC P11368
#=GS P11368/440-588      OS Mouse intracisternal A-particle MIA14
#=GS P11368/440-588      DE Putative Pol polyprotein
#=GS P11368/440-588      DR GENE3D; c9590f9568832f10f873a4112f5b53c1/440-588; 
#=GS P11368/440-588      DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; 
#=GS P11368/440-588      DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS A0A0P6CB18/250-398  AC A0A0P6CB18
#=GS A0A0P6CB18/250-398  OS Daphnia magna
#=GS A0A0P6CB18/250-398  DE HERV-K 16p3.3 provirus ancestral Env polyprotein
#=GS A0A0P6CB18/250-398  DR GENE3D; 2c69504aabba3f4e438e8dca8e5540c3/250-398; 
#=GS A0A0P6CB18/250-398  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS F9W6J4/462-610      AC F9W6J4
#=GS F9W6J4/462-610      OS Trypanosoma congolense IL3000
#=GS F9W6J4/462-610      DE WGS project CAEQ00000000 data, annotated contig 1482
#=GS F9W6J4/462-610      DR GENE3D; fff656ecb55e24fe9e76865987637fef/462-610; 
#=GS F9W6J4/462-610      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GF TC 269.6 2.3E-84
#=GF SQ 9
P04026/393-544              LNQAIVFPQVTAKDPLPDGTVVYTDGSKTGLGAYVVKDRVISKQYNETSPQVVECLIVLEVLEAFPGPLNIVSDSSYVVNAVNLLEIAGIIRSSSRVANIFQKIQAALLNRRFPVFITHVRAHSGLP--GPMSLGNDLADKATKLVATALSTHA
Q61706/12-155               -NIYMF-----RRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKIFLEPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRFPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
Q7TQ37/350-498              -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLKPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
Q1W5W7/612-760              -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLKPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
B7U9H2/495-619              -------------------------WKRRCIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLKPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
P12894/359-507              -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLKPLNIVSDSYYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
P11368/440-588              -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPRMVECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEGGWSDKPSSRVANIFQQIQLVLLS-RSPVYITHVRAHSGLPTSAPWLSGNDLADKATS-GGCSLSS--
A0A0P6CB18/250-398          -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLKPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
F9W6J4/462-610              -NQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVSKQYNENSPQVVECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSRRSPVYITHVRAHSGLP--GPMALGNDLADKATKVVAAALSS--
#=GC scorecons              0543343333334455345455555667667999977779799999979977999979999976964999999996999999999957656779999999997996799769599799999999999007965699999999974675799700
#=GC scorecons_70           __________________________*************************************_**_*******************_**_********************_*_**************__***_***********_**_****__
#=GC scorecons_80           ___________________________*__*****___*********_**************__*__********_**********_*___*_************__**__*_**************__**___*********___*_***___
#=GC scorecons_90           _______________________________****____*_******_**__****_*****__*__********_**********_______*********_**__**__*_**_***********___*___*********______**___
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