# STOCKHOLM 1.0
#=GF ID 3.30.420.10/FF/44851
#=GF DE Pro-Pol polyprotein
#=GF AC 3.30.420.10/FF/44851
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 47.004
#=GS 2lsnA00/1-165   AC P14350
#=GS 2lsnA00/1-165   OS Human spumaretrovirus
#=GS 2lsnA00/1-165   DE Pro-Pol polyprotein
#=GS 2lsnA00/1-165   DR CATH; 2lsn; A:1-165; 
#=GS 2lsnA00/1-165   DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS 2lsnA00/1-165   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P23074/590-751  AC P23074
#=GS P23074/590-751  OS Macaque simian foamy virus
#=GS P23074/590-751  DE Pro-Pol polyprotein
#=GS P23074/590-751  DR GENE3D; 035351b66c88f352e6f454747603de46/590-751; 
#=GS P23074/590-751  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Macaque simian foamy virus; 
#=GS P23074/590-751  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P27401/589-751  AC P27401
#=GS P27401/589-751  OS Simian foamy virus (TYPE 3 / STRAIN LK3)
#=GS P27401/589-751  DE Pro-Pol polyprotein
#=GS P27401/589-751  DR GENE3D; 2e4fb41e0fca6f3bd78e4eadde3b0653/589-751; 
#=GS P27401/589-751  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; African green monkey simian foamy virus; 
#=GS P27401/589-751  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q87040/589-751  AC Q87040
#=GS Q87040/589-751  OS Pan troglodytes foamy virus
#=GS Q87040/589-751  DE Pro-Pol polyprotein
#=GS Q87040/589-751  DR GENE3D; 90273283b4cce6154296f9febc7c3a25/589-751; 
#=GS Q87040/589-751  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS Q87040/589-751  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P14350/589-751  AC P14350
#=GS P14350/589-751  OS Human spumaretrovirus
#=GS P14350/589-751  DE Pro-Pol polyprotein
#=GS P14350/589-751  DR GENE3D; ae247a73165b9cfcfcbd34f9ff7cacd2/589-751; 
#=GS P14350/589-751  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS P14350/589-751  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS B3FX03/18-180   AC B3FX03
#=GS B3FX03/18-180   OS Simian foamy virus
#=GS B3FX03/18-180   DE Pol protein
#=GS B3FX03/18-180   DR GENE3D; 2f44b6ce45d137c0e9c8ff51faf60929/18-180; 
#=GS B3FX03/18-180   DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS K7YNA8/589-751  AC K7YNA8
#=GS K7YNA8/589-751  OS Simian foamy virus
#=GS K7YNA8/589-751  DE Pol protein
#=GS K7YNA8/589-751  DR GENE3D; 425106f1f489eb92e77ae72bae9762af/589-751; 
#=GS K7YNA8/589-751  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS O56226/392-549  AC O56226
#=GS O56226/392-549  OS Human spumaretrovirus
#=GS O56226/392-549  DE Pr125
#=GS O56226/392-549  DR GENE3D; 4e36c3c42770e3fec879c73e283da3e9/392-549; 
#=GS O56226/392-549  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS E2GD57/590-752  AC E2GD57
#=GS E2GD57/590-752  OS Simian foamy virus-gorilla
#=GS E2GD57/590-752  DE Pol protein
#=GS E2GD57/590-752  DR GENE3D; 4ff786f478ec44dacea3536599c50e16/590-752; 
#=GS E2GD57/590-752  DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS B3FXI8/18-180   AC B3FXI8
#=GS B3FXI8/18-180   OS Simian foamy virus
#=GS B3FXI8/18-180   DE Reverse transcriptase
#=GS B3FXI8/18-180   DR GENE3D; 614cb7c8a872062dab8d6156bdb4f640/18-180; 
#=GS B3FXI8/18-180   DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS B3FXJ1/18-180   AC B3FXJ1
#=GS B3FXJ1/18-180   OS Simian foamy virus
#=GS B3FXJ1/18-180   DE Reverse transcriptase
#=GS B3FXJ1/18-180   DR GENE3D; 614cb7c8a872062dab8d6156bdb4f640/18-180; 
#=GS B3FXJ1/18-180   DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GS B3FXK5/18-180   AC B3FXK5
#=GS B3FXK5/18-180   OS Simian foamy virus
#=GS B3FXK5/18-180   DE Reverse transcriptase
#=GS B3FXK5/18-180   DR GENE3D; 614cb7c8a872062dab8d6156bdb4f640/18-180; 
#=GS B3FXK5/18-180   DR ORG; Viruses; Retroviridae; Spumaretrovirinae; Spumavirus; Simian foamy virus; 
#=GF TC 329.0 2.4E-102
#=GF SQ 12
2lsnA00/1-165           GAMGQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYVVN
P23074/590-751          ---SEFAMVFYTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKIVHQWSIPLGDHTAQLAEIAAVEFACKKALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLKPDIIIMHEKGHQQPMTTLHTEGNNLADKLATQGSYVVH
P27401/589-751          --PSEFSMVFYTDGSAIKHPNVNKSHNAGMGIAQVQFKPEFTVINTWSIPLGDHTAQLAEVAAVEFACKKALKIDGPVLIVTDSFYVAESVNKELPYWQSNGFFNNKKKPLKHVSKWKSIADCIQLKPDIIIIHEKGHQPTASTFHTEGNNLADKLATQGSYVVN
Q87040/589-751          --PSQYEGVFCTDGSAIKSPDPTKSNNAGMGIVHAIYNPEYKILNQWSIPLGHHTAQMAEIAAVEFACKKALKVPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKEPLKHISKWKSIAECLSIKPDITIQHEKGHQPINTSIHTEGNALADKLATQGSYVVN
P14350/589-751          --PSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGISLQIPVFILKGNALADKLATQGSYVVN
B3FX03/18-180           --PSQYESVFYTDGSAIKSPDPTKSNNAGMGIVHASYKPEYQILDQWSIPLGNHTAQMAEITAVEFACKKALKISGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSIKPDITIQHERGHQPMNTSIHTEGNALADKLATQGSYVVN
K7YNA8/589-751          --PSEFNMVFYTDGSAIKHPNIKKSHSAGMGIAQVQFKPDFTIVNTWSIPLGDHTAQMAEIAAVEFACKKALKITGPVLVVTDSFYVAESANKELPYWQSNGFVNNKKKPLKHVSKWKSIAECLQLKPDIVIMHEKGHQPSNTTFHTEGNNLADKLATQGSYVVN
O56226/392-549          --PSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGISLQIPVFILKGNALADKLC--GGM---
E2GD57/590-752          --PSQYNSVFYTDGSAIRSPDPTKSHNAGMGIVQVKFSPELQVINQWSIPLGNHTAQMAEIAAVEFACKKALKITGPVLIITDSFYVAESTNKELPYWKSNGFVNNKKKPLKHVSKWKSIAECLSLKPDITIQHERGHQPIYTSIHTEGNALADKLATQGSYVVN
B3FXI8/18-180           --PSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDIVIQHEKGHQPTNTSIHTEGNALADKLATQGSYVVN
B3FXJ1/18-180           --PSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDIVIQHEKGHQPTNTSIHTEGNALADKLATQGSYVVN
B3FXK5/18-180           --PSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHVTYKPEYQILNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSLKPDIVIQHEKGHQPTNTSIHTEGNALADKLATQGSYVVN
#=GC scorecons          006867549989999998597559966999996664759865767699999969999799889999999999984999977999999999799999997999969999899897999999989756999959599796653364566799699999766977665
#=GC scorecons_70       ___***__**********_**__**_********__*_***_*_********_*********************_*************************************************_*****_*_****_*_______****_*************_
#=GC scorecons_80       ___*_*__**********_*___**__*****____*_**______******_*********************_****_**********_*******_****_*********_**********__****_*_****___________**_******__***___
#=GC scorecons_90       ___*____**********_*___**__*****______**______******_****_****************_****__*********_*******_****_*********_*********___****_*_**_*___________**_*****___*_____
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