# STOCKHOLM 1.0
#=GF ID 3.30.1460.30/FF/1513
#=GF DE DNA transformation protein
#=GF AC 3.30.1460.30/FF/1513
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 97.092
#=GS A0A011NC33/4-105  AC A0A011NC33
#=GS A0A011NC33/4-105  OS Mannheimia haemolytica serotype A1/A6 str. PKL10
#=GS A0A011NC33/4-105  DE DNA transformation protein
#=GS A0A011NC33/4-105  DR GENE3D; 12fd5b4f76ed50447a430b603825df0e/4-105; 
#=GS A0A011NC33/4-105  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica; 
#=GS E2P8E1/5-103      AC E2P8E1
#=GS E2P8E1/5-103      OS Mannheimia haemolytica serotype A2 str. BOVINE
#=GS E2P8E1/5-103      DE Putative DNA transformation protein
#=GS E2P8E1/5-103      DR GENE3D; 13fcf06b2355647ba4d5c0a44293fb67/5-103; 
#=GS E2P8E1/5-103      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica; 
#=GS K0FZ56/5-106      AC K0FZ56
#=GS K0FZ56/5-106      OS Actinobacillus suis H91-0380
#=GS K0FZ56/5-106      DE DNA transformation protein
#=GS K0FZ56/5-106      DR GENE3D; 22766e522968fff74d3299e44f4c6f2f/5-106; 
#=GS K0FZ56/5-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus suis; 
#=GS M9X288/5-104      AC M9X288
#=GS M9X288/5-104      OS Mannheimia haemolytica M42548
#=GS M9X288/5-104      DE TfoX-like regulator of competence-specific genes
#=GS M9X288/5-104      DR GENE3D; 2e587ee8b77b1f3b9a12feb851d3769f/5-104; 
#=GS M9X288/5-104      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica; 
#=GS B8F752/6-105      AC B8F752
#=GS B8F752/6-105      OS Haemophilus parasuis SH0165
#=GS B8F752/6-105      DE DNA transformation protein, regulator of competence-specific genes
#=GS B8F752/6-105      DR GENE3D; 46ba0d0b7ac4473d2dcd2628d84deed8/6-105; 
#=GS B8F752/6-105      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS A0A0E1RMU9/6-105  AC A0A0E1RMU9
#=GS A0A0E1RMU9/6-105  OS Haemophilus parasuis 29755
#=GS A0A0E1RMU9/6-105  DE DNA transformation protein, regulator of competence-specific genes
#=GS A0A0E1RMU9/6-105  DR GENE3D; 46ba0d0b7ac4473d2dcd2628d84deed8/6-105; 
#=GS A0A0E1RMU9/6-105  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS U4RQR3/6-105      AC U4RQR3
#=GS U4RQR3/6-105      OS Haemophilus parasuis str. Nagasaki
#=GS U4RQR3/6-105      DE DNA transformation protein
#=GS U4RQR3/6-105      DR GENE3D; 46ba0d0b7ac4473d2dcd2628d84deed8/6-105; 
#=GS U4RQR3/6-105      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS J4KCD0/5-63       AC J4KCD0
#=GS J4KCD0/5-63       OS Haemophilus sputorum HK 2154
#=GS J4KCD0/5-63       DE TfoX N-terminal domain protein
#=GS J4KCD0/5-63       DR GENE3D; 5526a9eaee87bce62b4984843dc5200f/5-63; 
#=GS J4KCD0/5-63       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus sputorum; 
#=GS I2NGM8/5-105      AC I2NGM8
#=GS I2NGM8/5-105      OS Haemophilus paraphrohaemolyticus HK411
#=GS I2NGM8/5-105      DE TfoX C-terminal domain protein
#=GS I2NGM8/5-105      DR GENE3D; 665ec66d613f8e626fcc8cbec3808714/5-105; 
#=GS I2NGM8/5-105      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus paraphrohaemolyticus; 
#=GS I3DGC3/5-106      AC I3DGC3
#=GS I3DGC3/5-106      OS Haemophilus parahaemolyticus HK385
#=GS I3DGC3/5-106      DE TfoX C-terminal domain protein
#=GS I3DGC3/5-106      DR GENE3D; 69ac4453eca2325fc3a39f2d26739769/5-106; 
#=GS I3DGC3/5-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parahaemolyticus; 
#=GS W0QCE2/4-106      AC W0QCE2
#=GS W0QCE2/4-106      OS Mannheimia varigena USDA-ARS-USMARC-1296
#=GS W0QCE2/4-106      DE DNA transformation protein
#=GS W0QCE2/4-106      DR GENE3D; 9ce957204deb4fdbbd21e40236f6aeb6/4-106; 
#=GS W0QCE2/4-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia varigena; 
#=GS M4RGE9/7-106      AC M4RGE9
#=GS M4RGE9/7-106      OS Bibersteinia trehalosi USDA-ARS-USMARC-192
#=GS M4RGE9/7-106      DE DNA transformation protein
#=GS M4RGE9/7-106      DR GENE3D; c9ae2081b95b8b63f52f88dadbb7d0de/7-106; 
#=GS M4RGE9/7-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi; 
#=GS A0A179CV84/7-106  AC A0A179CV84
#=GS A0A179CV84/7-106  OS Bibersteinia trehalosi Y31
#=GS A0A179CV84/7-106  DE DNA transformation protein
#=GS A0A179CV84/7-106  DR GENE3D; c9ae2081b95b8b63f52f88dadbb7d0de/7-106; 
#=GS A0A179CV84/7-106  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi; 
#=GS U4RL15/7-106      AC U4RL15
#=GS U4RL15/7-106      OS Haemophilus parasuis MN-H
#=GS U4RL15/7-106      DE TfoX C-terminal domain protein
#=GS U4RL15/7-106      DR GENE3D; e7bedebb62616aa375d01eaad57e6a10/7-106; 
#=GS U4RL15/7-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS U4RQB6/7-106      AC U4RQB6
#=GS U4RQB6/7-106      OS Haemophilus parasuis SW114
#=GS U4RQB6/7-106      DE TfoX C-terminal domain protein
#=GS U4RQB6/7-106      DR GENE3D; e7bedebb62616aa375d01eaad57e6a10/7-106; 
#=GS U4RQB6/7-106      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS A0A084EAM5/7-106  AC A0A084EAM5
#=GS A0A084EAM5/7-106  OS [Haemophilus] parasuis
#=GS A0A084EAM5/7-106  DE DNA transformation protein
#=GS A0A084EAM5/7-106  DR GENE3D; e7bedebb62616aa375d01eaad57e6a10/7-106; 
#=GS A0A084EAM5/7-106  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GS A0A063CVJ1/7-106  AC A0A063CVJ1
#=GS A0A063CVJ1/7-106  OS Haemophilus parasuis HPS10
#=GS A0A063CVJ1/7-106  DE DNA transformation protein
#=GS A0A063CVJ1/7-106  DR GENE3D; e7bedebb62616aa375d01eaad57e6a10/7-106; 
#=GS A0A063CVJ1/7-106  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; [Haemophilus] parasuis; 
#=GF TC 90.1 4.8E-29
#=GF SQ 17
A0A011NC33/4-105          TNEIRQEIAPLFSPIIGQFRLKTYFSYYAVFKNDLMIALYQNNSIYLRIATKYSELIFNHPDTNPLSDNKIGLQSNKFYNLPADILANNSLFTDLVISIVDE--
E2P8E1/5-103              -NEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQNGATYLRIAKKDIEYIRQYPETCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGII----
K0FZ56/5-106              -TKELERLKALLSP-LGEVTFKPYFSFLGIFKNDTMFALYKDQHLYVRKSAQYLEEITQTISIHFLVDRHINCRSKIFYLLPSSILNNLQTYSHWITSAIHEYQ
M9X288/5-104              -NEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQNGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGIIE---
B8F752/6-105              --AKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAK-NLSLLLDSQTGINLKSFYLIPPDLLNDLQQVSHWVVESVKDI-
A0A0E1RMU9/6-105          --AKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAK-NLSLLLDSQTGINLKSFYLIPPDLLNDLQQVSHWVVESVKDI-
U4RQR3/6-105              --AKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAK-NLSLLLDSQTGINLKSFYLIPPDLLNDLQQVSHWVVESVKDI-
J4KCD0/5-63               -NELKAPLSAIFTPLIGEFRIKTYFSYYGIFKDKIMLALYKDEQLYLRIAKTDLEEIKLL--------------------------------------------
I2NGM8/5-105              -QAVEKPISTLFEPIVGKVKIKTYFSYYAVFANGFMLALYKNNMVFLRASTNSKAEIQQLEGTYPLQDHDVGINTKNFYAMSYKFALETPKFSIWLTSILEE--
I3DGC3/5-106              -HAVEQPISALFEPITGKIRLKTHFSYYGIHTNGFMIALYKNNTIFIRASRQSKTEIQQLEETYVLQDPEVGLNTKNFFAIPYHTALNESRFSHWVRSILEEL-
W0QCE2/4-106              INEIRKEIIPLFEPIIGEIRIKTYFSYYAIFKNNFMIALYQNKATFLRISQYDIADISQHPSTYNLSDDKIGLQSRKFHFIPSSILSDTRKFSSLIRSTINEL-
M4RGE9/7-106              ---KTRLIREIFADIIGETRVKTFFSYYAIFKNDLLFGLYKNDKFYLRMPEHASENELIS-QLERLDDARFGIHNKNFYHLPQSILLNPEVYSHLVKTTLKEIA
A0A179CV84/7-106          ---KTRLIREIFADIIGETRVKTFFSYYAIFKNDLLFGLYKNDKFYLRMPEHASENELIS-QLERLDDARFGIHNKNFYHLPQSILLNPEVYSHLVKTTLKEIA
U4RL15/7-106              ---KTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKSFYLIPTEILYDLKPISHWITNGIQEI-
U4RQB6/7-106              ---KTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKSFYLIPTEILYDLKPISHWITNGIQEI-
A0A084EAM5/7-106          ---KTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKSFYLIPTEILYDLKPISHWITNGIQEI-
A0A063CVJ1/7-106          ---KTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKSFYLIPTEILYDLKPISHWITNGIQEI-
#=GC scorecons            01234537446637679545498799886757644757997644487655343455433323432727343654353763562345253324644523343420
#=GC scorecons_70         _______*__**_****____*******_*_**__*_*****___***_________________*_*___*_____*___*__________*___________
#=GC scorecons_80         _______*_____*_**____*******_*_*_____***_____**__________________*_*_________*__________________________
#=GC scorecons_90         ________________*____**_****__________**________________________________________________________________
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