# STOCKHOLM 1.0
#=GF ID 3.10.28.10/FF/22029
#=GF DE Intein-containing DNA polymerase II
#=GF AC 3.10.28.10/FF/22029
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 49.168
#=GS Q5JET0/1179-1337      AC Q5JET0
#=GS Q5JET0/1179-1337      OS Thermococcus kodakarensis KOD1
#=GS Q5JET0/1179-1337      DE DNA polymerase II large subunit
#=GS Q5JET0/1179-1337      DR GENE3D; 902c0456425ea1d1f59c9257c3263def/1179-1337; 
#=GS Q5JET0/1179-1337      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS Q5JET0/1179-1337      DR EC; 2.7.7.7; 
#=GS A0A100XXN2/822-980    AC A0A100XXN2
#=GS A0A100XXN2/822-980    OS Thermococcus celericrescens
#=GS A0A100XXN2/822-980    DE DNA polymerase II large subunit
#=GS A0A100XXN2/822-980    DR GENE3D; 1191e3b765deb12939d0ec0b08d78dac/822-980; 
#=GS A0A100XXN2/822-980    DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celericrescens; 
#=GS A0A100XXN2/822-980    DR EC; 2.7.7.7; 
#=GS A0A160VTY0/1170-1329  AC A0A160VTY0
#=GS A0A160VTY0/1170-1329  OS Thermococcus chitonophagus
#=GS A0A160VTY0/1170-1329  DE DNA polymerase II large subunit
#=GS A0A160VTY0/1170-1329  DR GENE3D; 7caff8849e26de052f135a708ad124f8/1170-1329; 
#=GS A0A160VTY0/1170-1329  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus chitonophagus; 
#=GS A0A160VTY0/1170-1329  DR EC; 2.7.7.7; 
#=GS A0A075LQQ3/1163-1323  AC A0A075LQQ3
#=GS A0A075LQQ3/1163-1323  OS Palaeococcus pacificus DY20341
#=GS A0A075LQQ3/1163-1323  DE DNA polymerase II large subunit
#=GS A0A075LQQ3/1163-1323  DR GENE3D; a6506d2e6545937cce9c1b38252c606a/1163-1323; 
#=GS A0A075LQQ3/1163-1323  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus; Palaeococcus pacificus; 
#=GS A0A075LQQ3/1163-1323  DR EC; 2.7.7.7; 
#=GS B6YUE7/1177-1334      AC B6YUE7
#=GS B6YUE7/1177-1334      OS Thermococcus onnurineus NA1
#=GS B6YUE7/1177-1334      DE DNA polymerase II large subunit
#=GS B6YUE7/1177-1334      DR GENE3D; ad458c598142e43051530fbcd12ab781/1177-1334; 
#=GS B6YUE7/1177-1334      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus onnurineus; 
#=GS B6YUE7/1177-1334      DR EC; 2.7.7.7; 
#=GS W0I9Q3/1167-1330      AC W0I9Q3
#=GS W0I9Q3/1167-1330      OS Thermococcus paralvinellae
#=GS W0I9Q3/1167-1330      DE DNA polymerase II large subunit
#=GS W0I9Q3/1167-1330      DR GENE3D; f34d6b7ce1a038fb8ecc499354c040d7/1167-1330; 
#=GS W0I9Q3/1167-1330      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus paralvinellae; 
#=GS W0I9Q3/1167-1330      DR EC; 2.7.7.7; 
#=GS A0A101DKW2/1162-1323  AC A0A101DKW2
#=GS A0A101DKW2/1162-1323  OS Thermococcales archaeon 44_46
#=GS A0A101DKW2/1162-1323  DE DNA polymerase II large subunit
#=GS A0A101DKW2/1162-1323  DR GENE3D; 39ac17310d2e1449c0694b21c840338e/1162-1323; 
#=GS A0A101DKW2/1162-1323  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcales archaeon 44_46; 
#=GF TC 0.0 0.0E+00
#=GF SQ 7
Q5JET0/1179-1337              KPLLRVVGYYLAEGYARESKSVYQLSFSMAEKEVREDLKRALREAFGDGFGIYERGGKVTVGSRILYLLFTEVLKAGKNAYSKRVPSLVFTLPREAVAEMLKAYFEGDGSALKSVPRVVAYSVNKALLEDIETLLLAKFGIRGYYTFDNNANRGNARGR-----
A0A100XXN2/822-980            KPLMRVLGYYLAEGYARESESVYQISFSVADEEAREDLKKVLREAFGDGFGIHERGEEVTVGSRVLYLLFTEVLKAGKNAHTKRVPSMVYTLPKEAVVEMLRAYFEGDGSALRTVPRVVVYSVNKPLLEDVETLLLGKFGIRGYDTVDKNANRGNARGR-----
A0A160VTY0/1170-1329          KPLMRVLGYYLAEGYARKSESVYQISFSIADEEVREDLKKALREAFGDGFGIYENREKVTIGSRILYLLFTEVLSAGRNAYTKRIPQLVYILPKDAVAEMLRAYFEGNGSALRTVPRVVAYSVNKVLLQDIETLLISKFGIRGYYTLDKNANRGNARGRL----
A0A075LQQ3/1163-1323          KPLLKLIGYYLAEGYARESNSVYQISFSNGDKETREDIKRALREAFGDGFGIYERGEKITVGSRIIYLLFTRVLKAGSGARDKRVPSFVFKLPREKVRHLLRAYFEGDGSAIKTAARVVVYSVNKPLLEDIETLLLSKFGIRGYYTMDKNANRGNARGRLY---
B6YUE7/1177-1334              -PFLRVLGYYLAEGYARKSNSVYQIGFSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRVPAFVFKLTPELVAEMLRAYFEGDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYYTLDKNANRGNARGR-----
W0I9Q3/1167-1330              EPLLRLIGYYLAEGYARESDSVYQISFSNGDEDVREDIKRALRKAFGDGFGIYERGEKITVGSRVIYLLFTRVLKIGKGAKDKRVPAFVFKLPKEKVRHLLQAYFEGDGSALKTAARVVVYSVNKPLLEDIETLLLSKFGIRGYYTMDKNANRGNARGRLYHIE
A0A101DKW2/1162-1323          TSLMKVLGYYLAEGYARKSDSVYQLSFSIADKEAREDLKTALREAFDDGFGIYERREKITVSSRVLYLLFTEVLKAGSNAHNKRVPPIVFTLPKEVVAEMLKAYFEGDGSALKTVPRVVVYSVNKTLLEDIETLLISKFKIRGYYTIDENANRGNARARVYY--
#=GC scorecons                37767659999999999594999967994685759996957997997899997976776977996699999699779469449979449749757394669699999799977766999699999499798999965996999979496999999997921000
#=GC scorecons_70             _*****_**********_*_********_**_*_*****_***************_***************_*****__*__****__**_**_*_*__**_***********************_**********_*********_*_**********_____
#=GC scorecons_80             _**_*__**********_*_****_***__*_*_***_*_***************_**_*****__*****_**__*__*__****__**_**_*_*___*_************__***_*****_*********__**_****_*_*_**********_____
#=GC scorecons_90             _______**********_*_****__**______***_*__**_**__****_*_____*__**__*****_**__*__*__**_*__*__*____*___*_*****_***_____***_*****_**_*_****__**_****_*_*_********_*_____
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