# STOCKHOLM 1.0
#=GF ID 2.60.40.10/FF/7522
#=GF DE Protein Pkd1
#=GF AC 2.60.40.10/FF/7522
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 64.668
#=GS P98161/1132-1208      AC P98161
#=GS P98161/1132-1208      OS Homo sapiens
#=GS P98161/1132-1208      DE Polycystin-1
#=GS P98161/1132-1208      DR GENE3D; f8758a1b2a933314b9e0b99e08f3e53e/1132-1208; 
#=GS P98161/1132-1208      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P98161/1132-1208      DR GO; GO:0000139; GO:0001701; GO:0001822; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005886; GO:0005887; GO:0005929; GO:0006611; GO:0007050; GO:0007156; GO:0007160; GO:0007161; GO:0007259; GO:0007507; GO:0009653; GO:0016021; GO:0016323; GO:0018105; GO:0019901; GO:0019904; GO:0021510; GO:0021915; GO:0030660; GO:0031514; GO:0031659; GO:0032092; GO:0042994; GO:0043588; GO:0044325; GO:0045944; GO:0048565; GO:0048754; GO:0048806; GO:0050982; GO:0051216; GO:0060170; GO:0060428; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072164; GO:0072177; GO:0072205; GO:0072218; GO:0072237; GO:0072287; 
#=GS O08852/1125-1202      AC O08852
#=GS O08852/1125-1202      OS Mus musculus
#=GS O08852/1125-1202      DE Polycystin-1
#=GS O08852/1125-1202      DR GENE3D; 70d511dcc197d2022ccc0a70ae1ee0d2/1125-1202; 
#=GS O08852/1125-1202      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS O08852/1125-1202      DR GO; GO:0001502; GO:0001568; GO:0001701; GO:0001822; GO:0001889; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005886; GO:0005929; GO:0006611; GO:0006807; GO:0006816; GO:0007050; GO:0007259; GO:0007507; GO:0009986; GO:0016323; GO:0016337; GO:0018105; GO:0019901; GO:0019904; GO:0030010; GO:0030155; GO:0031514; GO:0031659; GO:0032092; GO:0034405; GO:0036303; GO:0042994; GO:0044325; GO:0045944; GO:0048754; GO:0050982; GO:0060236; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072001; 
#=GS Q5DU58/153-230        AC Q5DU58
#=GS Q5DU58/153-230        OS Mus musculus
#=GS Q5DU58/153-230        DE MFLJ00285 protein
#=GS Q5DU58/153-230        DR GENE3D; 95b2ed6ad8997b33f7a7b655047cec53/153-230; 
#=GS Q5DU58/153-230        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q9ERV0/1115-1192      AC Q9ERV0
#=GS Q9ERV0/1115-1192      OS Rattus norvegicus
#=GS Q9ERV0/1115-1192      DE Pkd1
#=GS Q9ERV0/1115-1192      DR GENE3D; d9942655790de79a8ede43778f4f3d25/1115-1192; 
#=GS Q9ERV0/1115-1192      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS Q9ERV0/1115-1192      DR GO; GO:0005794; GO:0007204; GO:0016020; GO:0016301; GO:0016328; GO:0043066; 
#=GS F1MAD3/1124-1201      AC F1MAD3
#=GS F1MAD3/1124-1201      OS Rattus norvegicus
#=GS F1MAD3/1124-1201      DE Polycystin 1, transient receptor potential channel-interacting
#=GS F1MAD3/1124-1201      DR GENE3D; b90f6b6ffb44ad7a39d55d0d2f904ae6/1124-1201; 
#=GS F1MAD3/1124-1201      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS F1MAD3/1124-1201      DR GO; GO:0005794; GO:0007204; GO:0016020; GO:0016328; 
#=GS W5QFZ4/75-152         AC W5QFZ4
#=GS W5QFZ4/75-152         OS Ovis aries
#=GS W5QFZ4/75-152         DE Uncharacterized protein
#=GS W5QFZ4/75-152         DR GENE3D; 1957db417d704044c3703d020103b7d0/75-152; 
#=GS W5QFZ4/75-152         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A096NL12/1110-1187  AC A0A096NL12
#=GS A0A096NL12/1110-1187  OS Papio anubis
#=GS A0A096NL12/1110-1187  DE Uncharacterized protein
#=GS A0A096NL12/1110-1187  DR GENE3D; 197635b5ca13430c3c74f3aa48f62c6e/1110-1187; 
#=GS A0A096NL12/1110-1187  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS F1Q0G0/1063-1140      AC F1Q0G0
#=GS F1Q0G0/1063-1140      OS Canis lupus familiaris
#=GS F1Q0G0/1063-1140      DE Uncharacterized protein
#=GS F1Q0G0/1063-1140      DR GENE3D; 23d75bd30790289883b5c1f56e03ceaa/1063-1140; 
#=GS F1Q0G0/1063-1140      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS G7Q081/33-110         AC G7Q081
#=GS G7Q081/33-110         OS Macaca fascicularis
#=GS G7Q081/33-110         DE Putative uncharacterized protein
#=GS G7Q081/33-110         DR GENE3D; 3798c22170918ce5b65a9c4dfac7d4c7/33-110; 
#=GS G7Q081/33-110         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A1A6HQ82/1071-1148  AC A0A1A6HQ82
#=GS A0A1A6HQ82/1071-1148  OS Neotoma lepida
#=GS A0A1A6HQ82/1071-1148  DE Uncharacterized protein
#=GS A0A1A6HQ82/1071-1148  DR GENE3D; 4550125ed3a3037a1b55596a80a0f0a8/1071-1148; 
#=GS A0A1A6HQ82/1071-1148  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Neotominae; Neotoma; Neotoma lepida; 
#=GS W5NPU6/75-152         AC W5NPU6
#=GS W5NPU6/75-152         OS Ovis aries
#=GS W5NPU6/75-152         DE Uncharacterized protein
#=GS W5NPU6/75-152         DR GENE3D; 51b8844f3e69ca5a5fd19a9ee9358338/75-152; 
#=GS W5NPU6/75-152         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS G1MHF8/1050-1127      AC G1MHF8
#=GS G1MHF8/1050-1127      OS Ailuropoda melanoleuca
#=GS G1MHF8/1050-1127      DE Uncharacterized protein
#=GS G1MHF8/1050-1127      DR GENE3D; 63a101b601d92bf55bd312d37e04ec54/1050-1127; 
#=GS G1MHF8/1050-1127      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda; Ailuropoda melanoleuca; 
#=GS F7GNT6/1056-1133      AC F7GNT6
#=GS F7GNT6/1056-1133      OS Callithrix jacchus
#=GS F7GNT6/1056-1133      DE Uncharacterized protein
#=GS F7GNT6/1056-1133      DR GENE3D; 6641914147f2d347544b68353cc6ac12/1056-1133; 
#=GS F7GNT6/1056-1133      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus; 
#=GS E1BC86/1130-1207      AC E1BC86
#=GS E1BC86/1130-1207      OS Bos taurus
#=GS E1BC86/1130-1207      DE Uncharacterized protein
#=GS E1BC86/1130-1207      DR GENE3D; 6a1935f91b48470798edbdd87013ec8e/1130-1207; 
#=GS E1BC86/1130-1207      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS F7HI29/1131-1208      AC F7HI29
#=GS F7HI29/1131-1208      OS Macaca mulatta
#=GS F7HI29/1131-1208      DE Uncharacterized protein
#=GS F7HI29/1131-1208      DR GENE3D; 6be0beb4ae47c0a2aaf45f883b7f6fed/1131-1208; 
#=GS F7HI29/1131-1208      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS L5KJS6/1033-1109      AC L5KJS6
#=GS L5KJS6/1033-1109      OS Pteropus alecto
#=GS L5KJS6/1033-1109      DE Polycystin-1
#=GS L5KJS6/1033-1109      DR GENE3D; 89d210610edef443aa910a5ea174e7f0/1033-1109; 
#=GS L5KJS6/1033-1109      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus; Pteropus alecto; 
#=GS G1QKY7/732-808        AC G1QKY7
#=GS G1QKY7/732-808        OS Nomascus leucogenys
#=GS G1QKY7/732-808        DE Uncharacterized protein
#=GS G1QKY7/732-808        DR GENE3D; b34ed303a03e3742fbf1bd2a5daca5c5/732-808; 
#=GS G1QKY7/732-808        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS Q8MJF3/1058-1135      AC Q8MJF3
#=GS Q8MJF3/1058-1135      OS Canis lupus familiaris
#=GS Q8MJF3/1058-1135      DE Polycystin-1
#=GS Q8MJF3/1058-1135      DR GENE3D; b73b79425a80031fe8678137bff2e292/1058-1135; 
#=GS Q8MJF3/1058-1135      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS H2NPT1/1131-1208      AC H2NPT1
#=GS H2NPT1/1131-1208      OS Pongo abelii
#=GS H2NPT1/1131-1208      DE Uncharacterized protein
#=GS H2NPT1/1131-1208      DR GENE3D; c3bb3d20a85f3a5e08bc0d6787c0b75f/1131-1208; 
#=GS H2NPT1/1131-1208      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A0D9RF52/686-763    AC A0A0D9RF52
#=GS A0A0D9RF52/686-763    OS Chlorocebus sabaeus
#=GS A0A0D9RF52/686-763    DE Uncharacterized protein
#=GS A0A0D9RF52/686-763    DR GENE3D; d3e7abae6040f68f004da60d90b19aa3/686-763; 
#=GS A0A0D9RF52/686-763    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G3QVU1/1130-1206      AC G3QVU1
#=GS G3QVU1/1130-1206      OS Gorilla gorilla gorilla
#=GS G3QVU1/1130-1206      DE Uncharacterized protein
#=GS G3QVU1/1130-1206      DR GENE3D; d609a77459b69fa2923bea601d80b40c/1130-1206; 
#=GS G3QVU1/1130-1206      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS G3HBQ9/550-627        AC G3HBQ9
#=GS G3HBQ9/550-627        OS Cricetulus griseus
#=GS G3HBQ9/550-627        DE Polycystin-1
#=GS G3HBQ9/550-627        DR GENE3D; e236dca3249d1d0a22d9fa26793b590d/550-627; 
#=GS G3HBQ9/550-627        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus griseus; 
#=GF TC 155.5 2.7E-49
#=GF SQ 22
P98161/1132-1208              -GVSDGVLVAGRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRV
O08852/1125-1202              IGMSSNVLVAGQPITFSPYPLPSTDGVLYTWDFGDGSPVLIQSQPVLNHTYSMTGAYRITLEVNNTVSSVTAHADIRV
Q5DU58/153-230                IGMSSNVLVAGQPITFSPYPLPSTDGVLYTWDFGDGSPVLIQSQPVLNHTYSMTGTYRITLEVNNTVSSVTAHADIRV
Q9ERV0/1115-1192              IGMSSNVLLAGQPITFFPYPLPSADGVLYTWDFGDGSPVLIQSQPVLNHTYSMTGTYRISLEVNNTVSSVAAHVDICV
F1MAD3/1124-1201              IGMSSNVLLAGQPITFFPYPLPSADGVLYTWDFGDGSPVLIQSQPVLNHTYSMTGTYRISLEVNNTVSSVAAHVDICV
W5QFZ4/75-152                 VAVGSQVLVAGQPVAFFPRPLPSPGGVLYTWDFGDGSPAVTQPQPEVNHTFALRGMYHVRLEVNNTVSHVVAAISVRV
A0A096NL12/1110-1187          VGVSDSVLVAGRPITFYPHPLPSPGGVLYTWDFGDSSPVLTQSQPAANHTYASRGTYCVHLEVNNTVSSALAQADVRV
F1Q0G0/1063-1140              VAVGSHVLVAGQPVTFSPHPLPSPGGILYTWDFGDGSPAVTQHQTEVSHTYASRGIYRIHLEVNNTVSSVTAWTSVRV
G7Q081/33-110                 VGVSDSVLVAGRPITFYPHPLPSPGGVLYTWDFGDSSPVLTQSQPTANHTYASRGTYRVHLEVNNTVSSALAQADVRV
A0A1A6HQ82/1071-1148          IGMSSNILVAGRPITFSPYPLPSADGVLYTWDFGDGSPVLIQSQPALNHTYTLTGTYRVILEVNNTVSSVAAHVDIHV
W5NPU6/75-152                 VAVGSQVLVAGQPVAFFPRPLPSPGGVLYTWDFGDGSPAVTQPQPEVNHTFALRGMYHVRLEVNNTVSHVVAAISVRV
G1MHF8/1050-1127              VAVGSRVLVAGQSVTFSPHPLPSPGGILYTWDFGDGSPAVTQPQPEVNHTYASRGVYRVRLEVNNTVSSVAACISIRV
F7GNT6/1056-1133              VGMSDSVLVAGRPVTFYPHPLPAPGGVLYIWDFGDGSPVLMQSQPATNHTYTSRGTYRVRLEVNNTVSSAVAQADLRV
E1BC86/1130-1207              VAVGSQVLVAGRPVAFFPRPLPSPGGVLYTWDFGDGSPAVTQPQPEVNHTFALRGTYRVRLEVNNTVSHTVADVSVRV
F7HI29/1131-1208              VGVSDSVLVAGRPITFYPHPLPSPGGVLYTWDFGDSSPVLTQSQPTANHTYASRGTYRVHLEVNNTVSSALAQADVRV
L5KJS6/1033-1109              -AVGSAVLVAGRPITFSPHPLPSPGGVLYTWDFGDGSPAVTQHQPVINHTYTSRGTYHIRLEVNNTVSSVAACAGVRI
G1QKY7/732-808                -GVSDGVLVAGRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRV
Q8MJF3/1058-1135              VAVGSHVLVAGQPVTFSPHPLPSPGGILYTWDFGDGSPAVTQHQTEVSHTYASRGIYRIHLEVNNTVSSVTAWTSVRV
H2NPT1/1131-1208              VGVSDSVLVAGRPITFYPHPLPSPGGVLYMWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAARADGRV
A0A0D9RF52/686-763            VGVSDSVLVAGRPITFYPHPLPSPGGVLYTWDFGDSSPVLTQSQPAANHTYASRGTYHVHLEVNNTVSSALAQADVRV
G3QVU1/1130-1206              -GVSDGVLVAGRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRV
G3HBQ9/550-627                IGMSSNFLVAGQPITFFPYPLPSADGVLYTWDFGDGSPVLIQSQPALNHTYTMTGTYRVILEVNNTVSSVAAHIDIHV
#=GC scorecons                566664898996877959699986698998999997996669597447998656969674999999995649355668
#=GC scorecons_70             _***__**********_*_***********************_**__****___*_***_********___*___***
#=GC scorecons_80             ______*****_*_**_*_****__*************___*_**__****___*_*_*_********___*_____*
#=GC scorecons_90             _______****_*__*_*_****__*_**_*****_**___*_*____***___*_*___********___*_____*
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