# STOCKHOLM 1.0
#=GF ID 2.60.40.10/FF/7505
#=GF DE Polycystin 1 isoform 2 variant
#=GF AC 2.60.40.10/FF/7505
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 67.116
#=GS P98161/1720-1802      AC P98161
#=GS P98161/1720-1802      OS Homo sapiens
#=GS P98161/1720-1802      DE Polycystin-1
#=GS P98161/1720-1802      DR GENE3D; f8758a1b2a933314b9e0b99e08f3e53e/1720-1802; 
#=GS P98161/1720-1802      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P98161/1720-1802      DR GO; GO:0000139; GO:0001701; GO:0001822; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005886; GO:0005887; GO:0005929; GO:0006611; GO:0007050; GO:0007156; GO:0007160; GO:0007161; GO:0007259; GO:0007507; GO:0009653; GO:0016021; GO:0016323; GO:0018105; GO:0019901; GO:0019904; GO:0021510; GO:0021915; GO:0030660; GO:0031514; GO:0031659; GO:0032092; GO:0042994; GO:0043588; GO:0044325; GO:0045944; GO:0048565; GO:0048754; GO:0048806; GO:0050982; GO:0051216; GO:0060170; GO:0060428; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072164; GO:0072177; GO:0072205; GO:0072218; GO:0072237; GO:0072287; 
#=GS O08852/1714-1798      AC O08852
#=GS O08852/1714-1798      OS Mus musculus
#=GS O08852/1714-1798      DE Polycystin-1
#=GS O08852/1714-1798      DR GENE3D; 70d511dcc197d2022ccc0a70ae1ee0d2/1714-1798; 
#=GS O08852/1714-1798      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS O08852/1714-1798      DR GO; GO:0001502; GO:0001568; GO:0001701; GO:0001822; GO:0001889; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005886; GO:0005929; GO:0006611; GO:0006807; GO:0006816; GO:0007050; GO:0007259; GO:0007507; GO:0009986; GO:0016323; GO:0016337; GO:0018105; GO:0019901; GO:0019904; GO:0030010; GO:0030155; GO:0031514; GO:0031659; GO:0032092; GO:0034405; GO:0036303; GO:0042994; GO:0044325; GO:0045944; GO:0048754; GO:0050982; GO:0060236; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072001; 
#=GS Q5DU58/741-826        AC Q5DU58
#=GS Q5DU58/741-826        OS Mus musculus
#=GS Q5DU58/741-826        DE MFLJ00285 protein
#=GS Q5DU58/741-826        DR GENE3D; 95b2ed6ad8997b33f7a7b655047cec53/741-826; 
#=GS Q5DU58/741-826        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q59EY6/175-257        AC Q59EY6
#=GS Q59EY6/175-257        OS Homo sapiens
#=GS Q59EY6/175-257        DE Polycystin 1 isoform 2 variant
#=GS Q59EY6/175-257        DR GENE3D; aea1d81f0aa975edd21d4c1f38de6570/175-257; 
#=GS Q59EY6/175-257        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q15142/1253-1335      AC Q15142
#=GS Q15142/1253-1335      OS Homo sapiens
#=GS Q15142/1253-1335      DE Polycystic kidney disease-associated protein
#=GS Q15142/1253-1335      DR GENE3D; ee6c976eafb911e6d75e940ed8496ae5/1253-1335; 
#=GS Q15142/1253-1335      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9ERV0/1703-1785      AC Q9ERV0
#=GS Q9ERV0/1703-1785      OS Rattus norvegicus
#=GS Q9ERV0/1703-1785      DE Pkd1
#=GS Q9ERV0/1703-1785      DR GENE3D; d9942655790de79a8ede43778f4f3d25/1703-1785; 
#=GS Q9ERV0/1703-1785      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS Q9ERV0/1703-1785      DR GO; GO:0005794; GO:0007204; GO:0016020; GO:0016301; GO:0016328; GO:0043066; 
#=GS F1MAD3/1712-1797      AC F1MAD3
#=GS F1MAD3/1712-1797      OS Rattus norvegicus
#=GS F1MAD3/1712-1797      DE Polycystin 1, transient receptor potential channel-interacting
#=GS F1MAD3/1712-1797      DR GENE3D; b90f6b6ffb44ad7a39d55d0d2f904ae6/1712-1797; 
#=GS F1MAD3/1712-1797      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS F1MAD3/1712-1797      DR GO; GO:0005794; GO:0007204; GO:0016020; GO:0016328; 
#=GS A0A096NL12/1699-1780  AC A0A096NL12
#=GS A0A096NL12/1699-1780  OS Papio anubis
#=GS A0A096NL12/1699-1780  DE Uncharacterized protein
#=GS A0A096NL12/1699-1780  DR GENE3D; 197635b5ca13430c3c74f3aa48f62c6e/1699-1780; 
#=GS A0A096NL12/1699-1780  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS F1Q0G0/1648-1733      AC F1Q0G0
#=GS F1Q0G0/1648-1733      OS Canis lupus familiaris
#=GS F1Q0G0/1648-1733      DE Uncharacterized protein
#=GS F1Q0G0/1648-1733      DR GENE3D; 23d75bd30790289883b5c1f56e03ceaa/1648-1733; 
#=GS F1Q0G0/1648-1733      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS F7GNT6/1646-1727      AC F7GNT6
#=GS F7GNT6/1646-1727      OS Callithrix jacchus
#=GS F7GNT6/1646-1727      DE Uncharacterized protein
#=GS F7GNT6/1646-1727      DR GENE3D; 6641914147f2d347544b68353cc6ac12/1646-1727; 
#=GS F7GNT6/1646-1727      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus; 
#=GS F7HI29/1720-1801      AC F7HI29
#=GS F7HI29/1720-1801      OS Macaca mulatta
#=GS F7HI29/1720-1801      DE Uncharacterized protein
#=GS F7HI29/1720-1801      DR GENE3D; 6be0beb4ae47c0a2aaf45f883b7f6fed/1720-1801; 
#=GS F7HI29/1720-1801      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS G1QKY7/1321-1403      AC G1QKY7
#=GS G1QKY7/1321-1403      OS Nomascus leucogenys
#=GS G1QKY7/1321-1403      DE Uncharacterized protein
#=GS G1QKY7/1321-1403      DR GENE3D; b34ed303a03e3742fbf1bd2a5daca5c5/1321-1403; 
#=GS G1QKY7/1321-1403      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS Q8MJF3/1643-1728      AC Q8MJF3
#=GS Q8MJF3/1643-1728      OS Canis lupus familiaris
#=GS Q8MJF3/1643-1728      DE Polycystin-1
#=GS Q8MJF3/1643-1728      DR GENE3D; b73b79425a80031fe8678137bff2e292/1643-1728; 
#=GS Q8MJF3/1643-1728      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS H2NPT1/1721-1802      AC H2NPT1
#=GS H2NPT1/1721-1802      OS Pongo abelii
#=GS H2NPT1/1721-1802      DE Uncharacterized protein
#=GS H2NPT1/1721-1802      DR GENE3D; c3bb3d20a85f3a5e08bc0d6787c0b75f/1721-1802; 
#=GS H2NPT1/1721-1802      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A0D9RF52/1276-1356  AC A0A0D9RF52
#=GS A0A0D9RF52/1276-1356  OS Chlorocebus sabaeus
#=GS A0A0D9RF52/1276-1356  DE Uncharacterized protein
#=GS A0A0D9RF52/1276-1356  DR GENE3D; d3e7abae6040f68f004da60d90b19aa3/1276-1356; 
#=GS A0A0D9RF52/1276-1356  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G3QVU1/1719-1800      AC G3QVU1
#=GS G3QVU1/1719-1800      OS Gorilla gorilla gorilla
#=GS G3QVU1/1719-1800      DE Uncharacterized protein
#=GS G3QVU1/1719-1800      DR GENE3D; d609a77459b69fa2923bea601d80b40c/1719-1800; 
#=GS G3QVU1/1719-1800      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS M3VY37/1593-1676      AC M3VY37
#=GS M3VY37/1593-1676      OS Felis catus
#=GS M3VY37/1593-1676      DE Uncharacterized protein
#=GS M3VY37/1593-1676      DR GENE3D; f5596d8f30b155a4aa2cc7c1cca68f70/1593-1676; 
#=GS M3VY37/1593-1676      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; 
#=GS E1BC86/1717-1799      AC E1BC86
#=GS E1BC86/1717-1799      OS Bos taurus
#=GS E1BC86/1717-1799      DE Uncharacterized protein
#=GS E1BC86/1717-1799      DR GENE3D; 6a1935f91b48470798edbdd87013ec8e/1717-1799; 
#=GS E1BC86/1717-1799      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GF TC 155.1 3.7E-49
#=GF SQ 18
P98161/1720-1802              ----WLMVAASPNPAAVNTSVTLSAELAGGSGVVYTWSLEEGLSWETSEPFTTHSFPTPGLHLVTMTAGNPLGSANATVEVDVQVPV--
O08852/1714-1798              -PVESLILSASPNPAAVNMSLTLCAELAGGSGVVYTWYLEEGLSWKTSMPSTTHTFAAPGLHLVRVTAENQLGSVNATVEVAIQVP---
Q5DU58/741-826                EPVESLILSASPNPAAVNMSLTLCAELAGGSGVVYTWYLEEGLSWKTSMPSTTHTFATPGLHLVRVTAENQLGSVNATVEVAIQVP---
Q59EY6/175-257                ----WLMVAASPNPAAVNTSVTLSAELAGGSGVVYTWSLEEGLSWETSEPFTTHSFPTPGLHLVTMTAGNPLGSANATVEVDVQVPV--
Q15142/1253-1335              ----WLMVAASPNPAAVNKSVTLSAELAGGSGVVYTWSLEEGLSWETSEPFTTHSFPTPGLHLVTMTAGNPLGSANATVEVDVQVPV--
Q9ERV0/1703-1785              -PVESLILSASPNPAAVNTSLTLGAELAGGSGVVYTWYLEEGLSRETSMPSTTHTFAAPGLHLVRVTAENQLGSVNATIEVAVH-----
F1MAD3/1712-1797              -PVESLILSASPNPAAVNTSLTLGAELAGGSGVVYTWYLEEGLSRETSMPSTTHTFAAPGLHLVRVTAENQLGSVNATIEVAVQAPV--
A0A096NL12/1699-1780          ----WLMVTASPNPAAVNTSVTLSAELAGGSGVLYTWSLEEGLSWETPEPFTTHSFPTPGLHLVTVTAGNPLGSASATVQVGVQVP---
F1Q0G0/1648-1733              EPVGALAAAASPNPAIVNSSVTLCAELAGGSGVTYTWSPEGGLSWETPEPSSTHVFPSPGLYLVRVTATNWLGSANVTIEVAVQVP---
F7GNT6/1646-1727              -----LMVAASPNPAAINMSVTLSAELAGGSSVLYTWSLEEGLSWETPEPFTTHSFPMPGLHLVTVTAGNPLGSANATMEVAVQVPV--
F7HI29/1720-1801              ----WLMVTASPNPAAVNTSVTLSAKLAGGSGVLYTWSLEEGLSWETPEPFTTHSFPTPGLHLVTVTAGNPLGSASATVEVGVQVP---
G1QKY7/1321-1403              -----LMVAASPNPAAVNTSVTLSAELAGGSGVVYTWSLEEGLSWDTPESFTTHSFPMPGLHLVTVTAGNPLGSANATVEVDVQVPVS-
Q8MJF3/1643-1728              EPVGALAAAASPNPAIVNSSVTLCAELAGGSGVTYTWSPEGGLSWETPEPSSTHVFPSPGLYLVRVTATNWLGSANVTIEVAVQVP---
H2NPT1/1721-1802              -----LMVAASPNPAAVDTSVTLSAELAGGSGVVYTWSLEEGQSWETPEPFTTHSFPTPGLHLVTITAGNPLGSANATVEVDVQVPV--
A0A0D9RF52/1276-1356          -----LMVAASPNPAAVNTSVTLSAELAGGSGVLYTWSLEEGLSWETPEPFTTHSFPTPGLHLVTVTAGNPLGSASATVEVGVQVP---
G3QVU1/1719-1800              -----LMVAASPNPAAVNTSVTLCAELAGGSGVVYTWSLEEGLSWETTEPFTTHSFPTPGLHLVTMTAGNPLGSANATMEVDVQVPV--
M3VY37/1593-1676              -----LAAAASPNPAAVDASVTLCAKLAGGSGVIYSWSLEGGLSWETPEPSTTHTFPTPGLYLVTVTARNQLGSANATTEVAVQVPVSG
E1BC86/1717-1799              ---GWLAVTASPNPAAVNTSVTLWAELAGGSSVIYSWSLEEGLCWETREPSTTLIFPSPGLCLVTVVAKNQLGSANASVEVVVQVP---
#=GC scorecons                01111955599999978759699497999997959796797988779558579749659997995789494999677868948877100
#=GC scorecons_70             _____*___*********_****_*********_***_*********__*_***_**_******_***_*_*******_**_****___
#=GC scorecons_80             _____*___*********_*_**_*********_***_**_******__*_***_*__***_**_***_*_***_***_**_**_*___
#=GC scorecons_90             _____*___******_*__*_**_*_*****_*_*_*__*_***__*__*__*__*__***_**__**_*_***___*_**_**_____
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