# STOCKHOLM 1.0
#=GF ID 2.60.40.10/FF/133844
#=GF DE SEMA4D variant protein
#=GF AC 2.60.40.10/FF/133844
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 41.163
#=GS 1olzA03/539-628     AC Q92854
#=GS 1olzA03/539-628     OS Homo sapiens
#=GS 1olzA03/539-628     DE Semaphorin-4D
#=GS 1olzA03/539-628     DR CATH; 1olz; A:539-628; 
#=GS 1olzA03/539-628     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 1olzA03/539-628     DR GO; GO:0000122; GO:0001934; GO:0004872; GO:0004888; GO:0005102; GO:0005515; GO:0005615; GO:0005886; GO:0005887; GO:0006955; GO:0007155; GO:0007162; GO:0008360; GO:0010693; GO:0014068; GO:0030215; GO:0030335; GO:0031344; GO:0043066; GO:0043547; GO:0043931; GO:0045668; GO:0048672; GO:0048814; GO:0050731; GO:0050732; GO:0070486; GO:0071526; GO:1900220; 
#=GS 1olzB03/539-628     AC Q92854
#=GS 1olzB03/539-628     OS Homo sapiens
#=GS 1olzB03/539-628     DE Semaphorin-4D
#=GS 1olzB03/539-628     DR CATH; 1olz; B:539-628; 
#=GS 1olzB03/539-628     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 1olzB03/539-628     DR GO; GO:0000122; GO:0001934; GO:0004872; GO:0004888; GO:0005102; GO:0005515; GO:0005615; GO:0005886; GO:0005887; GO:0006955; GO:0007155; GO:0007162; GO:0008360; GO:0010693; GO:0014068; GO:0030215; GO:0030335; GO:0031344; GO:0043066; GO:0043547; GO:0043931; GO:0045668; GO:0048672; GO:0048814; GO:0050731; GO:0050732; GO:0070486; GO:0071526; GO:1900220; 
#=GS 3ol2A03/540-627     AC Q92854
#=GS 3ol2A03/540-627     OS Homo sapiens
#=GS 3ol2A03/540-627     DE Semaphorin-4D
#=GS 3ol2A03/540-627     DR CATH; 3ol2; A:561-648; 
#=GS 3ol2A03/540-627     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 3ol2A03/540-627     DR GO; GO:0000122; GO:0001934; GO:0004872; GO:0004888; GO:0005102; GO:0005515; GO:0005615; GO:0005886; GO:0005887; GO:0006955; GO:0007155; GO:0007162; GO:0008360; GO:0010693; GO:0014068; GO:0030215; GO:0030335; GO:0031344; GO:0043066; GO:0043547; GO:0043931; GO:0045668; GO:0048672; GO:0048814; GO:0050731; GO:0050732; GO:0070486; GO:0071526; GO:1900220; 
#=GS Q92854/560-649      AC Q92854
#=GS Q92854/560-649      OS Homo sapiens
#=GS Q92854/560-649      DE Semaphorin-4D
#=GS Q92854/560-649      DR GENE3D; 5a090bea58616afc837a6064c3e6b34f/560-649; 
#=GS Q92854/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q92854/560-649      DR GO; GO:0000122; GO:0001934; GO:0004872; GO:0004888; GO:0005102; GO:0005515; GO:0005615; GO:0005886; GO:0005887; GO:0006955; GO:0007155; GO:0007162; GO:0008360; GO:0010693; GO:0014068; GO:0030215; GO:0030335; GO:0031344; GO:0043066; GO:0043547; GO:0043931; GO:0045668; GO:0048672; GO:0048814; GO:0050731; GO:0050732; GO:0070486; GO:0071526; GO:1900220; 
#=GS W5PD31/561-650      AC W5PD31
#=GS W5PD31/561-650      OS Ovis aries
#=GS W5PD31/561-650      DE Uncharacterized protein
#=GS W5PD31/561-650      DR GENE3D; 1315208dd30bdaa425c1d444073a0e4d/561-650; 
#=GS W5PD31/561-650      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A0B5CU26/560-649  AC A0A0B5CU26
#=GS A0A0B5CU26/560-649  OS Castor fiber
#=GS A0A0B5CU26/560-649  DE Semaphorin-4D
#=GS A0A0B5CU26/560-649  DR GENE3D; 1d9ab694f81f70c687283e3555e87e9d/560-649; 
#=GS A0A0B5CU26/560-649  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Castorimorpha; Castoridae; Castor; Castor fiber; 
#=GS A0A091CWI4/558-647  AC A0A091CWI4
#=GS A0A091CWI4/558-647  OS Fukomys damarensis
#=GS A0A091CWI4/558-647  DE Semaphorin-4D
#=GS A0A091CWI4/558-647  DR GENE3D; 404c4e4fec011c525310f269129d4778/558-647; 
#=GS A0A091CWI4/558-647  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys; Fukomys damarensis; 
#=GS F1RN15/568-657      AC F1RN15
#=GS F1RN15/568-657      OS Sus scrofa
#=GS F1RN15/568-657      DE Uncharacterized protein
#=GS F1RN15/568-657      DR GENE3D; 50787c89688c0c697c101f2093c5451e/568-657; 
#=GS F1RN15/568-657      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS K9J315/562-651      AC K9J315
#=GS K9J315/562-651      OS Desmodus rotundus
#=GS K9J315/562-651      DE Putative semaphorin
#=GS K9J315/562-651      DR GENE3D; 53a079220be6c32932fe752b19b9066d/562-651; 
#=GS K9J315/562-651      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Desmodontinae; Desmodus; Desmodus rotundus; 
#=GS A0A0D9R4M5/560-649  AC A0A0D9R4M5
#=GS A0A0D9R4M5/560-649  OS Chlorocebus sabaeus
#=GS A0A0D9R4M5/560-649  DE Uncharacterized protein
#=GS A0A0D9R4M5/560-649  DR GENE3D; 5cce80b6bcfb3b794345f70b3b730c90/560-649; 
#=GS A0A0D9R4M5/560-649  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G1QHW6/560-649      AC G1QHW6
#=GS G1QHW6/560-649      OS Nomascus leucogenys
#=GS G1QHW6/560-649      DE Uncharacterized protein
#=GS G1QHW6/560-649      DR GENE3D; 6c660a504a351aaa77c09b1b64f94c6d/560-649; 
#=GS G1QHW6/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS H2PSM3/560-649      AC H2PSM3
#=GS H2PSM3/560-649      OS Pongo abelii
#=GS H2PSM3/560-649      DE Uncharacterized protein
#=GS H2PSM3/560-649      DR GENE3D; 7f02eeea6ef7aa19355db31670f236ab/560-649; 
#=GS H2PSM3/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS I3NH93/559-648      AC I3NH93
#=GS I3NH93/559-648      OS Ictidomys tridecemlineatus
#=GS I3NH93/559-648      DE Uncharacterized protein
#=GS I3NH93/559-648      DR GENE3D; 8aade4b86de9caba54cdaee5023bed3b/559-648; 
#=GS I3NH93/559-648      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus; 
#=GS G3QKQ3/560-649      AC G3QKQ3
#=GS G3QKQ3/560-649      OS Gorilla gorilla gorilla
#=GS G3QKQ3/560-649      DE Uncharacterized protein
#=GS G3QKQ3/560-649      DR GENE3D; 8b3a0a6d0a3ab0ed638278096eabc755/560-649; 
#=GS G3QKQ3/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS I3LXL9/559-648      AC I3LXL9
#=GS I3LXL9/559-648      OS Ictidomys tridecemlineatus
#=GS I3LXL9/559-648      DE Uncharacterized protein
#=GS I3LXL9/559-648      DR GENE3D; 959205638e5983fa4d24dba79b550588/559-648; 
#=GS I3LXL9/559-648      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus; 
#=GS F7FCM4/560-649      AC F7FCM4
#=GS F7FCM4/560-649      OS Macaca mulatta
#=GS F7FCM4/560-649      DE Uncharacterized protein
#=GS F7FCM4/560-649      DR GENE3D; 9b2e34b6554e3d87a474478ef03ca1e8/560-649; 
#=GS F7FCM4/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS H2R6L6/560-649      AC H2R6L6
#=GS H2R6L6/560-649      OS Pan troglodytes
#=GS H2R6L6/560-649      DE Uncharacterized protein
#=GS H2R6L6/560-649      DR GENE3D; a43482eb29a34cf95c1ed902aca5b01c/560-649; 
#=GS H2R6L6/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS L5JXG3/84-173       AC L5JXG3
#=GS L5JXG3/84-173       OS Pteropus alecto
#=GS L5JXG3/84-173       DE Semaphorin-4D
#=GS L5JXG3/84-173       DR GENE3D; bc2577267a40da08b41746ba9af4f512/84-173; 
#=GS L5JXG3/84-173       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus; Pteropus alecto; 
#=GS A0A096P1Y1/560-649  AC A0A096P1Y1
#=GS A0A096P1Y1/560-649  OS Papio anubis
#=GS A0A096P1Y1/560-649  DE Uncharacterized protein
#=GS A0A096P1Y1/560-649  DR GENE3D; cdbc4c605904fa69a8ff384536b700a9/560-649; 
#=GS A0A096P1Y1/560-649  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS G5BZ44/560-649      AC G5BZ44
#=GS G5BZ44/560-649      OS Heterocephalus glaber
#=GS G5BZ44/560-649      DE Semaphorin-4D
#=GS G5BZ44/560-649      DR GENE3D; d89cae773ee51f8121784b830a87317d/560-649; 
#=GS G5BZ44/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus; Heterocephalus glaber; 
#=GS G7PSN8/560-649      AC G7PSN8
#=GS G7PSN8/560-649      OS Macaca fascicularis
#=GS G7PSN8/560-649      DE BB18
#=GS G7PSN8/560-649      DR GENE3D; ea5f26b9496eaf80131dbec5ec96b1fd/560-649; 
#=GS G7PSN8/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS K7GR88/560-649      AC K7GR88
#=GS K7GR88/560-649      OS Sus scrofa
#=GS K7GR88/560-649      DE Uncharacterized protein
#=GS K7GR88/560-649      DR GENE3D; eefa919f53a87567e6181631e6f2256c/560-649; 
#=GS K7GR88/560-649      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS H0VAA5/565-654      AC H0VAA5
#=GS H0VAA5/565-654      OS Cavia porcellus
#=GS H0VAA5/565-654      DE Uncharacterized protein
#=GS H0VAA5/565-654      DR GENE3D; f3e1b40462a252d5c19ed74ded395850/565-654; 
#=GS H0VAA5/565-654      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Hystricomorpha; Caviidae; Cavia; Cavia porcellus; 
#=GF TC 189.4 8.6E-60
#=GF SQ 23
1olzA03/539-628             SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
1olzB03/539-628             SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
3ol2A03/540-627             -YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKV-
Q92854/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
W5PD31/561-650              SYLQHFFKHGGTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYQCLSEERVKNKTISQVVAKHVLEVKTV
A0A0B5CU26/560-649          SFRQRFFKHGDTAELKCSPKSNLARVVWKFQNGVLKAKSPKYSLVGRRNLLIFNLSEGDSGVYQCLSEERVKNKTVSQLLAKHVLEVKVV
A0A091CWI4/558-647          SYRQHFFKHGGMAELKCSQKSNLARVVWKFQNGVLKAESPKYGLVGRKNLLIFNLSEGDSGVYQCLAEERVRNKTVSQVVAKHVLEVKLL
F1RN15/568-657              SYRQHFFKHGSTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYLCLSEERVKNKTVLQVVAKHVLEVRTV
K9J315/562-651              SYQQHIFKHGSTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVSQVVAKHVLAVKMF
A0A0D9R4M5/560-649          SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
G1QHW6/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
H2PSM3/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
I3NH93/559-648              SYRQHFFKHGGTAELRCALKSNLARVVWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVRNKTVSQVVAKHLLEVKVV
G3QKQ3/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
I3LXL9/559-648              SYRQHFFKHGGTAELRCALKSNLARVVWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVRNKTVSQVVAKHLLEVKVV
F7FCM4/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
H2R6L6/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
L5JXG3/84-173               SFRQHFFKHGSTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVLQVVARHVLEVKTV
A0A096P1Y1/560-649          SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
G5BZ44/560-649              SYRQHFFKHGGMAELKCSQKSNLARVVWKFQNGVLKAESPKYGLVGRKNLLIFNLSEGDSGVYQCLAEERVRNKTVSQVVAKHVLEVKVL
G7PSN8/560-649              SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV
K7GR88/560-649              SYRQHFFKHGSTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYLCLSEERVKNKTVLQVVAKHVLEVRTV
H0VAA5/565-654              SYRQRFFKHGDTAELKCSQKSSLARVVWKFQNGVLKAESPKYGLVGRGNLLIFNLSEGDSGVYQCLAEERVRSGMVSQVVAKHVLEVKVL
#=GC scorecons              887978999957999897699899996999999999989999696997999999999999999799799997878849889898989866
#=GC scorecons_70           **********_***************_*************************************************_***********__
#=GC scorecons_80           **********_*******_*******_***************_*_*******************************_***********__
#=GC scorecons_90           **_*_*****__*****__*******_***************_*_**_***************_**_****_*__*_******_****__
//