# STOCKHOLM 1.0
#=GF ID 2.30.29.30/FF/22030
#=GF DE Probable RNA polymerase II transcription factor B subunit 1-1
#=GF AC 2.30.29.30/FF/22030
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 43.102
#=GS Q9M322/1-100      AC Q9M322
#=GS Q9M322/1-100      OS Arabidopsis thaliana
#=GS Q9M322/1-100      DE Probable RNA polymerase II transcription factor B subunit 1-3
#=GS Q9M322/1-100      DR GENE3D; c50cac3fa44727d81ce0882310fca979/1-100; 
#=GS Q9M322/1-100      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q3ECP0/3-108      AC Q3ECP0
#=GS Q3ECP0/3-108      OS Arabidopsis thaliana
#=GS Q3ECP0/3-108      DE Probable RNA polymerase II transcription factor B subunit 1-1
#=GS Q3ECP0/3-108      DR GENE3D; e94626e780f173c4910a29516692322e/3-108; 
#=GS Q3ECP0/3-108      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS V4KR97/6-110      AC V4KR97
#=GS V4KR97/6-110      OS Eutrema salsugineum
#=GS V4KR97/6-110      DE Uncharacterized protein
#=GS V4KR97/6-110      DR GENE3D; 2573d393ce017048df75135f21d09620/6-110; 
#=GS V4KR97/6-110      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A087GD45/4-108  AC A0A087GD45
#=GS A0A087GD45/4-108  OS Arabis alpina
#=GS A0A087GD45/4-108  DE Uncharacterized protein
#=GS A0A087GD45/4-108  DR GENE3D; 2d4558e88d702396389cb1f610919384/4-108; 
#=GS A0A087GD45/4-108  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS A0A078ILS6/2-102  AC A0A078ILS6
#=GS A0A078ILS6/2-102  OS Brassica napus
#=GS A0A078ILS6/2-102  DE BnaA02g14670D protein
#=GS A0A078ILS6/2-102  DR GENE3D; 87f98472247fa0172ed0d08b2d4b7d94/2-102; 
#=GS A0A078ILS6/2-102  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3AP91/2-101  AC A0A0D3AP91
#=GS A0A0D3AP91/2-101  OS Brassica oleracea var. oleracea
#=GS A0A0D3AP91/2-101  DE Uncharacterized protein
#=GS A0A0D3AP91/2-101  DR GENE3D; 9a225c102225b6907f3847f68185d767/2-101; 
#=GS A0A0D3AP91/2-101  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A078ISP3/2-101  AC A0A078ISP3
#=GS A0A078ISP3/2-101  OS Brassica napus
#=GS A0A078ISP3/2-101  DE BnaCnng26250D protein
#=GS A0A078ISP3/2-101  DR GENE3D; 9a225c102225b6907f3847f68185d767/2-101; 
#=GS A0A078ISP3/2-101  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A087GD44/4-107  AC A0A087GD44
#=GS A0A087GD44/4-107  OS Arabis alpina
#=GS A0A087GD44/4-107  DE Uncharacterized protein
#=GS A0A087GD44/4-107  DR GENE3D; b2966901b991efe4cb81069b1e4f9d8d/4-107; 
#=GS A0A087GD44/4-107  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS R0GVZ5/5-104      AC R0GVZ5
#=GS R0GVZ5/5-104      OS Capsella rubella
#=GS R0GVZ5/5-104      DE Uncharacterized protein
#=GS R0GVZ5/5-104      DR GENE3D; b71c1b6cc1b8b15c9eceaba58cbf8af0/5-104; 
#=GS R0GVZ5/5-104      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS M4FB51/2-102      AC M4FB51
#=GS M4FB51/2-102      OS Brassica rapa subsp. pekinensis
#=GS M4FB51/2-102      DE Uncharacterized protein
#=GS M4FB51/2-102      DR GENE3D; d6e783e64e90281044659b82ad0ea8d1/2-102; 
#=GS M4FB51/2-102      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GF TC 209.0 5.0E-66
#=GF SQ 10
Q9M322/1-100              ---MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKPPWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEE----
Q3ECP0/3-108              GGQIEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKPPWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAKCELEPNK-
V4KR97/6-110              --QVEKRVRYKSSVKDPGTPGFLRLTEAMLLFVPNDPKSDSKLKVQTLNIKSQKYTKEGSNKPPWLNLTNKQGKSHIFEFENYSDMHACRDFITKALAKCEEVPKKS
A0A087GD45/4-108          -LQVEKRVKYKSSVKDPGTPGLLRIKEVMLLFVPEDPKSDSKLKVQTQNIKSQKYTKEGSNKPPWLNLTNKQGRSHIFEFENYQDMHSCRDFITKALAKCEEEPKK-
A0A078ILS6/2-102          ---SDWQVKYKSSLKDRGTEGILKLREGMLLFVPNDPTSDSKLKVLTPNIKSQKYTKEGSKKPAWLNLSNKQGDSHIFEFQNYQDMHACRALITKALAKCEEEQ---
A0A0D3AP91/2-101          ---SDWQVKYKSTVKDRGARGILKLREGMLLFVPNDPNSDSKLKVLTPNIKSQKYTKEGSNKPPWLNLTNKQARSHIFEFENYQDMHACRALITKALAKCEEE----
A0A078ISP3/2-101          ---SDWQVKYKSTVKDRGARGILKLREGMLLFVPNDPNSDSKLKVLTPNIKSQKYTKEGSNKPPWLNLTNKQARSHIFEFENYQDMHACRALITKALAKCEEE----
A0A087GD44/4-107          -LQVEKRVKYKSSVKDPGTPGLLRI-EVMLLFVPEDPKSDSKLKVQTQNIKSQKYTKEGSNKPPWLNLTNKQGRSHIFEFENYQDMHSCRDFITKALAKCEEEPKK-
R0GVZ5/5-104              --QVEKRVKYKSSVKDPGTSGFLRIKEAMLLFVPDDPKSDSKLKVQTQNIKSQKYTKEGSQKPAWLNLTNKQGRSHIFEFGNYPDMHACRDFITKALAKCEE-----
M4FB51/2-102              ---SDWQVKYKSSLKDRGTEGILKLREGMLLFVPNDPTSDSKLKVLTPNIKSQKYTKEGSKKPAWLNLSNKQGDSHIFEFQNYQDMHACRALITKALAKCEEEQ---
#=GC scorecons            00247459899957995973949664949999996995997999949499999999999969969999779965999999699599979956999999999751010
#=GC scorecons_70         ____*__*****_***_**_*_*_*_*_*********_*******_*_************_************_*********_******_***********_____
#=GC scorecons_80         _______*****_***_**_*_*___*_******_**_*******_*_************_**_****_***__******_**_***_**__**********_____
#=GC scorecons_90         _______*****__**_*__*_*___*_******_**_**_****_*_************_**_****__**__******_**_***_**__*********______
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