# STOCKHOLM 1.0 #=GF ID 1.10.1420.10/FF/5385 #=GF DE DNA mismatch repair protein #=GF AC 1.10.1420.10/FF/5385 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 77.053 #=GS F4JEP5/182-399 AC F4JEP5 #=GS F4JEP5/182-399 OS Arabidopsis thaliana #=GS F4JEP5/182-399 DE DNA mismatch repair protein MSH5 #=GS F4JEP5/182-399 DR GENE3D; 2edfd284f18572de6b80bda3775bde6d/182-399; #=GS F4JEP5/182-399 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4JEP5/182-399 DR GO; GO:0000794; GO:0007131; GO:0010777; GO:0043073; GO:0045143; GO:0051026; #=GS Q54P75/253-398_486-542 AC Q54P75 #=GS Q54P75/253-398_486-542 OS Dictyostelium discoideum #=GS Q54P75/253-398_486-542 DE DNA mismatch repair protein #=GS Q54P75/253-398_486-542 DR GENE3D; 620a1c1533aaf673132681db2450d203/253-398_486-542; #=GS Q54P75/253-398_486-542 DR ORG; Eukaryota; Dictyosteliida; Dictyostelium; Dictyostelium discoideum; #=GS Q54P75/253-398_486-542 DR GO; GO:0007131; #=GS Q6L4V0/216-372_463-519 AC Q6L4V0 #=GS Q6L4V0/216-372_463-519 OS Oryza sativa Japonica Group #=GS Q6L4V0/216-372_463-519 DE DNA mismatch repair protein MSH5 #=GS Q6L4V0/216-372_463-519 DR GENE3D; b07154c33a51ebae2ee603e00de0143d/216-372_463-519; #=GS Q6L4V0/216-372_463-519 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q6L4V0/216-372_463-519 DR GO; GO:0000712; GO:0007131; GO:0045143; GO:0051026; #=GS K3Z412/174-330_419-476 AC K3Z412 #=GS K3Z412/174-330_419-476 OS Setaria italica #=GS K3Z412/174-330_419-476 DE Uncharacterized protein #=GS K3Z412/174-330_419-476 DR GENE3D; cc75b321fdb70c28c8e60ea84b2ab827/174-330_419-476; #=GS K3Z412/174-330_419-476 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS A0A059BMS5/189-345_437-492 AC A0A059BMS5 #=GS A0A059BMS5/189-345_437-492 OS Eucalyptus grandis #=GS A0A059BMS5/189-345_437-492 DE Uncharacterized protein #=GS A0A059BMS5/189-345_437-492 DR GENE3D; a69c09298b83d685dec8330d4d824ddc/189-345_437-492; #=GS A0A059BMS5/189-345_437-492 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus; Eucalyptus grandis; #=GS A0A061F4P4/213-382_474-531 AC A0A061F4P4 #=GS A0A061F4P4/213-382_474-531 OS Theobroma cacao #=GS A0A061F4P4/213-382_474-531 DE MUTS #=GS A0A061F4P4/213-382_474-531 DR GENE3D; c720acc59ee46ecc75284d0ba71a649b/213-382_474-531; #=GS A0A061F4P4/213-382_474-531 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; #=GS R0I3X2/212-368_460-517 AC R0I3X2 #=GS R0I3X2/212-368_460-517 OS Capsella rubella #=GS R0I3X2/212-368_460-517 DE Uncharacterized protein #=GS R0I3X2/212-368_460-517 DR GENE3D; ab21dd7c5b4b996d6125e49a4940bc0c/212-368_460-517; #=GS R0I3X2/212-368_460-517 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS K7M4I0/212-368_460-515 AC K7M4I0 #=GS K7M4I0/212-368_460-515 OS Glycine max #=GS K7M4I0/212-368_460-515 DE Uncharacterized protein #=GS K7M4I0/212-368_460-515 DR GENE3D; dad72330b246104081801df7224f9d92/212-368_460-515; #=GS K7M4I0/212-368_460-515 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A0D3CI08/209-365_457-512 AC A0A0D3CI08 #=GS A0A0D3CI08/209-365_457-512 OS Brassica oleracea var. oleracea #=GS A0A0D3CI08/209-365_457-512 DE Uncharacterized protein #=GS A0A0D3CI08/209-365_457-512 DR GENE3D; 044c4b9bbaf13f811dcba7a1e6430317/209-365_457-512; #=GS A0A0D3CI08/209-365_457-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS V4NMZ8/212-368_460-515 AC V4NMZ8 #=GS V4NMZ8/212-368_460-515 OS Eutrema salsugineum #=GS V4NMZ8/212-368_460-515 DE Uncharacterized protein #=GS V4NMZ8/212-368_460-515 DR GENE3D; 930565f132cf337f2c7b5f431365c78e/212-368_460-515; #=GS V4NMZ8/212-368_460-515 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS A0A068UDP4/212-370_462-517 AC A0A068UDP4 #=GS A0A068UDP4/212-370_462-517 OS Coffea canephora #=GS A0A068UDP4/212-370_462-517 DE Uncharacterized protein #=GS A0A068UDP4/212-370_462-517 DR GENE3D; a3ececb318e2e126348ecb76c1798438/212-370_462-517; #=GS A0A068UDP4/212-370_462-517 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; asterids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea; Coffea canephora; #=GS I1JJB3/196-352_444-499 AC I1JJB3 #=GS I1JJB3/196-352_444-499 OS Glycine max #=GS I1JJB3/196-352_444-499 DE Uncharacterized protein #=GS I1JJB3/196-352_444-499 DR GENE3D; b9e14144d253c1ec0cab0a94eb7120c0/196-352_444-499; #=GS I1JJB3/196-352_444-499 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS D7LB00/182-399 AC D7LB00 #=GS D7LB00/182-399 OS Arabidopsis lyrata subsp. lyrata #=GS D7LB00/182-399 DE Putative uncharacterized protein #=GS D7LB00/182-399 DR GENE3D; e5ea24fe9e3c5f9313a2c3642264607b/182-399; #=GS D7LB00/182-399 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS G7K3K2/214-370_462-517 AC G7K3K2 #=GS G7K3K2/214-370_462-517 OS Medicago truncatula #=GS G7K3K2/214-370_462-517 DE DNA mismatch repair protein MutS #=GS G7K3K2/214-370_462-517 DR GENE3D; d687eb9b4386d2a4c3bec3f5780a9fec/214-370_462-517; #=GS G7K3K2/214-370_462-517 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago; Medicago truncatula; #=GS J3M8J2/217-373_464-520 AC J3M8J2 #=GS J3M8J2/217-373_464-520 OS Oryza brachyantha #=GS J3M8J2/217-373_464-520 DE Uncharacterized protein #=GS J3M8J2/217-373_464-520 DR GENE3D; 685e65b690c11db0dbafc8dc0225f639/217-373_464-520; #=GS J3M8J2/217-373_464-520 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; #=GS M5WPL7/172-388 AC M5WPL7 #=GS M5WPL7/172-388 OS Prunus persica #=GS M5WPL7/172-388 DE Uncharacterized protein #=GS M5WPL7/172-388 DR GENE3D; b374bc59308140229b2421d0923f0cc9/172-388; #=GS M5WPL7/172-388 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus; Prunus persica; #=GS I1QDM6/216-373_464-520 AC I1QDM6 #=GS I1QDM6/216-373_464-520 OS Oryza glaberrima #=GS I1QDM6/216-373_464-520 DE Uncharacterized protein #=GS I1QDM6/216-373_464-520 DR GENE3D; 79bc3e606fedb0f2d010f71c9da40734/216-373_464-520; #=GS I1QDM6/216-373_464-520 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A078JFI5/209-365_457-512 AC A0A078JFI5 #=GS A0A078JFI5/209-365_457-512 OS Brassica napus #=GS A0A078JFI5/209-365_457-512 DE BnaCnng46130D protein #=GS A0A078JFI5/209-365_457-512 DR GENE3D; 0c899a416951cf4a28df89718053208c/209-365_457-512; #=GS A0A078JFI5/209-365_457-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GF TC 243.9 1.3E-75 #=GF SQ 18 F4JEP5/182-399 FLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ISFFISSV--ELMASLRETLKSVKDISHLL-KKFNSPTSLCTSNDWTAFLK--SISALLHVNKIFEVGVSESLREHMRRFNLDIIEKAGLCISTELDYVYELVIGVIDVTRSKERGYQTLVKEGFCAELDEL-RQIYEELPEFLQEVS--------------------AMELE-------- Q54P75/253-398_486-542 -----------------------------KEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVIEERQNL-------------IQFFSSQENSSLKFELLDNLKNIKDLKIIL-SRISSSQN--PSKDFISIYK--TFHYFLKIKLLIVPKNSE----------LPFLKKLNNLYPQSLVNIYQKFESIFFFADQDDQ--RISIQK--TKELDDFFGDIHNDILDIQSRIEKEVVDEIMSNSGSIIDLCNYCTQLDCILSLAS- Q6L4V0/216-372_463-519 ------------------------------EGFSVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNT-------------ISFFLCCE--DVMSALRGTLKSVRDIPHML-KKFNSPSSFCTSSDWHAFLK--CICSLLHINKIFEVGISEHLAIKLQHMNIDLVGKANSSITEELDYVSDLVVGVIDVQRGKEKGYDTLVQK--TRELDNLLGDIYHKILDMERAIIRDLVCRVCQFIPQLTKAVNFAAELDCILSLAI- K3Z412/174-330_419-476 ------------------------------EGFSVFGMLNKCVTPMGRRLLRAWFLRPIIDIDVINNRLNT-------------ITFFLCCE--EVMSALCETLKSVRDVPHML-KKFNSPSSFCTSSDWNTFLK--CICSLLHINKIFEVGISEHLANKLQHMNIDLIGKANSSITAELDYVSDLVVGVIDVQRGKEKGYETVVQK--TRELDNLLGDIYHKILDMERAIMRDLVCRVLQFLPQLTKAVNFAAELDCILSLAVV A0A059BMS5/189-345_437-492 ------------------------------EGFSVFGMMNKCVTPIGRRLLRSWFLRPIVDLEHLNNRLNA-------------ISFFLSSE--ELMDSLRETLKSVKDIPFIL-KKFNSPSSICTSSDWSAFLK--SVSSLLHLNKILEVGISEGLDEQMKYLSTDILEKASSCITTELAYVYELVIGVIDISRIKEKGYETMVTK--TRELDDLLGDLHHKILDMERAIIRDLILHILTFSAHLLEAVNFAAEVDCFLSLA-- A0A061F4P4/213-382_474-531 ------------------------------EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNNRLNAVSFYSLIIWGMIKISFFLSSE--ELMVSLRETLKSVKDIPHIL-KKFNSPNSMCTSSDWMAFLK--SVCSLLHVNKIFEVGISENLREHMEYLNLDIVAKASSCITADLAFVYELVIGVIDVNRSKDKGYGTMVPK--TRELDDLLGDIYHKILDMERAIIRDLVSHVSTFSTHLIKAVNFVAELDCFLSLAMV R0I3X2/212-368_460-517 ------------------------------EGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ISFFISSV--ELMASLRETLKSVKDISHLL-KKFNSPTSLCTSNDWTAFLK--SISALLHVNKIFEVGVSESLKEHMRRFNLDIIEKAGLCISTELDYIYELVTGVIDVTRSKERGYQTLVPK--TRELDNLLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLAYV K7M4I0/212-368_460-515 ------------------------------EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNS-------------ISFFLCSE--ELVTSLRETLKSVKDIPLLL-KKFDSPSSICTSFDWTALLK--SICAMLHVNKIFEVGISEGLREELKYLNLDIVEKASSHITAELGYVYELVIGVIDVNRTKEKGYATVVPK--TRELDSLLGDIHHKILDMERAITRDLFSRILLFQTHLIKVATFAAELDCFLSMA-- A0A0D3CI08/209-365_457-512 ------------------------------EGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ITFFISSI--ELMTSLRDTLKSVKDISHLL-KKFNSPTSLCTSNDWTAFMK--SIGALLHVNKIFEVGVSESLREHMRRFNLDIIEKAGLCISTELDHVYELVLGVIDVTRCKEKGYQTLVPK--TRELDNVLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLA-- V4NMZ8/212-368_460-515 ------------------------------EGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ISFFISSV--ELMTSLRETLKSVKDISHLL-KKFNSPTSLCTSNDWTAFMK--SISALLHVNKIFEVGVSESLREHMRRFNLDIIEKAGLCISTELDYVYELVIGVIDVTRSKEKGYQTLVPK--TRELDNLLGDIYHKILDMERAIIRDLLSHTLIFSAHLLKAVNFVAELDCILSLA-- A0A068UDP4/212-370_462-517 ------------------------------EGFSLFGMMNKCVTPMGRRLLRNWFLRPILDIEKLNKRFDA-------------ITFFHSAE--ELLASLRETLQSIKDIPHIL-KKFNSPSSLCTSSDWKAFVKVFSICSLLHINKIFEVGISENLQEELKYLNLDIVEQVEFYLSADLAYVYELVVGVVDVNRSKDKGYETIVAK--TRELDSLLGDLYHKILDMERAIIGDLVSRILQFSSHLKQAVNFVAELDCFLSLA-- I1JJB3/196-352_444-499 ------------------------------EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNS-------------ISFFLCSE--ELVASLRETLKSVKDIPHLL-NKFDSPSSICTSSDWTSLLK--SICALLHVNEIFEVGISEGLREELKYLNLDIVEKASSYITAELGYVYELVIGVIDVNRTKEKGYATVVPK--TRELDSLLGDIHHKILDMERAIARDLFSRILLFRTHLIKVATFAAELDCFLSMA-- D7LB00/182-399 FLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ISFFISSV--ELMASLRETLKSVKDISHLL-KKFNSPTSLCTSNDWTAFLK--SISALLHVNKIFEVGVSESLREHMRRFNLDIIEKAGLCISTELDYVYELVIGVIDVTRSKERGYQTLVKEGFCAELDEL-RQIYEELPEFLQEVS--------------------AMELE-------- G7K3K2/214-370_462-517 ------------------------------EGFSVFGMMNKCVTPMGRRLLRQWFLRPILDLEVLNYRLNS-------------ISFFHSSE--ELVASLRETLKSVKDIPHLL-KKFDSPSSICTSTDWAALLK--SISALLHVNKIFEVGISEGLQEELKYLNLDIVEMASSCITTELAYVYELIIGVIDVNRTKEKGYPTVVPK--TRELDNLLGDIYHKILDMERAITRDLFSHVSLFSTHLTKVATFAAELDCFLSMA-- J3M8J2/217-373_464-520 ------------------------------EGFSVFGMVNKCVTPMGKRLLRTWFLRPIVDIEVINNRLNT-------------ISFFLCCE--EVMAALRETLKSVRDIPHML-KKFNSPSSLCTSNDWHTFLK--CICSLLHINKIFEVGISEHLANKLQHMNIDLVGKANSSITEELDYVSDLVVGVIDVQRGKEKGYETLVQK--TRELDNLLGDIYHKILDMERAIIRDLVCRVCQFVPQLTKAVNFAAELDCMLSLAI- M5WPL7/172-388 FLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRSWFLRPILDLETLNSRLNA-------------ISFFLSSE--ELINSLRGTLKSVKDIPHIL-KKFNSPSSICTSGDWTAFLK--SVCSLLHVNKIFEVGVSESLQEHAKYLNLDIVEKAASCITTELAYVYELVIGVLDVSRSKEKGYETIVKDDFCDELDEL-RQIYEELPEFLEEVS--------------------QMEL--------- I1QDM6/216-373_464-520 ------------------------------EGFSVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNT-------------ISFFLCCE--EVMSALRGTLKSVRDIPHMLKKKFNSPSSFCTSSDWHAFLK--CICSLLHINKIFEVGISEHLAIKLQHMNIDLVGKANSSITEELDYVSDLVVGVIDVQRGKEKGYDTLVQK--TRELDNLLGDIYHKILDMERAIIRDLVCRVCQFIPQLTKAVNFAAELDCILSLAI- A0A078JFI5/209-365_457-512 ------------------------------EGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNA-------------ITFFISSI--ELMTSLRDTLKSVKDISHLL-KKFNSPTSLCTSNDWTAFMK--SIGALLRVNKIFEVGVSESLREHMRRFNLDIIEKAGLCISTELDHVYELVLGVIDVTRCKEKGYQTLVPK--TRELDNVLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLA-- #=GC scorecons 0000000000000000000000000000009979799867975978977998499699757566663978500000000000009699465500775469667987779756590787697574779497466690066457976767777759937354444466766577444754694686677578677474776774758460065999574668756767655574444323322422342333444578653554500 #=GC scorecons_70 ______________________________************_*********_******_*___*__***______________*_**_*____**___***********_*_*_******_*_***_**_****___*__***********_**_*_______****__**___*__**_******_*****_*_*****_*_*_*__*_***_*_****__***____*_______________________***________ #=GC scorecons_80 ______________________________********_***_*********_**_***_*______*_*______________*_**______**___*__********___*__**_**_*__**_**____*______***_*_*****_**___________*___*________*__*__**_**__*_*_**____*_*______***_*___**____*____*_______________________**_________ #=GC scorecons_90 ______________________________**_*_***__*__*_**__***_**_**_________*_*______________*_**___________*___**___*____*__*__*______*_*_____*_______*__________**________________________*_________*______________*______***_________________________________________*_________ //