# STOCKHOLM 1.0 #=GF ID 1.10.10.200/FF/1888 #=GF DE Pol polyprotein #=GF AC 1.10.10.200/FF/1888 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 79.770 #=GS 3hpgA01/1-59 AC P35956 #=GS 3hpgA01/1-59 OS Visna/maedi virus EV1 KV1772 #=GS 3hpgA01/1-59 DE Pol polyprotein #=GS 3hpgA01/1-59 DR CATH; 3hpg; A:4-59; #=GS 3hpgA01/1-59 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hpgA01/1-59 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P33459/830-887 AC P33459 #=GS P33459/830-887 OS Caprine arthritis encephalitis virus strain Cork #=GS P33459/830-887 DE Pol polyprotein #=GS P33459/830-887 DR GENE3D; 2d6f3d3a0be3e6aa35c58a561ea696b0/830-887; #=GS P33459/830-887 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS P33459/830-887 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; #=GS 3hpgB01/1-58 AC P35956 #=GS 3hpgB01/1-58 OS Visna/maedi virus EV1 KV1772 #=GS 3hpgB01/1-58 DE Pol polyprotein #=GS 3hpgB01/1-58 DR CATH; 3hpg; B:4-58; #=GS 3hpgB01/1-58 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hpgB01/1-58 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS 3hpgE01/1-59 AC P35956 #=GS 3hpgE01/1-59 OS Visna/maedi virus EV1 KV1772 #=GS 3hpgE01/1-59 DE Pol polyprotein #=GS 3hpgE01/1-59 DR CATH; 3hpg; E:2-59; #=GS 3hpgE01/1-59 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hpgE01/1-59 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS 3hpgF01/1-58 AC P35956 #=GS 3hpgF01/1-58 OS Visna/maedi virus EV1 KV1772 #=GS 3hpgF01/1-58 DE Pol polyprotein #=GS 3hpgF01/1-58 DR CATH; 3hpg; F:2-58; #=GS 3hpgF01/1-58 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hpgF01/1-58 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS 3hphB01/1-58 AC P35956 #=GS 3hphB01/1-58 OS Visna/maedi virus EV1 KV1772 #=GS 3hphB01/1-58 DE Pol polyprotein #=GS 3hphB01/1-58 DR CATH; 3hph; B:1-58; #=GS 3hphB01/1-58 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hphB01/1-58 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS 3hphC01/1-58 AC P35956 #=GS 3hphC01/1-58 OS Visna/maedi virus EV1 KV1772 #=GS 3hphC01/1-58 DE Pol polyprotein #=GS 3hphC01/1-58 DR CATH; 3hph; C:1-58; #=GS 3hphC01/1-58 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS 3hphC01/1-58 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P23427/825-882 AC P23427 #=GS P23427/825-882 OS Visna lentivirus (strain 1514 / clone LV1-1KS2) #=GS P23427/825-882 DE Pol polyprotein #=GS P23427/825-882 DR GENE3D; 0bd0b50b95f1d38694ecd2475a32773d/825-882; #=GS P23427/825-882 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS P23427/825-882 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P03370/825-882 AC P03370 #=GS P03370/825-882 OS Visna lentivirus (strain 1514) #=GS P03370/825-882 DE Pol polyprotein #=GS P03370/825-882 DR GENE3D; 7d2e58adb2f05d57c8dff24110188aef/825-882; #=GS P03370/825-882 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS P03370/825-882 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P35956/821-878 AC P35956 #=GS P35956/821-878 OS Visna/maedi virus EV1 KV1772 #=GS P35956/821-878 DE Pol polyprotein #=GS P35956/821-878 DR GENE3D; ab78e1223c47d439429f262a4bb3eb5f/821-878; #=GS P35956/821-878 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS P35956/821-878 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P16901/806-863 AC P16901 #=GS P16901/806-863 OS Ovine lentivirus (strain SA-OMVV) #=GS P16901/806-863 DE Pol polyprotein #=GS P16901/806-863 DR GENE3D; e8ee91a86339b882194673dd96aa7fe8/806-863; #=GS P16901/806-863 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS P16901/806-863 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS Q1W0S4/806-863 AC Q1W0S4 #=GS Q1W0S4/806-863 OS Ovine lentivirus #=GS Q1W0S4/806-863 DE Pol protein #=GS Q1W0S4/806-863 DR GENE3D; e8ee91a86339b882194673dd96aa7fe8/806-863; #=GS Q1W0S4/806-863 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Ovine lentivirus; #=GS Q1W0S4/806-863 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS P23426/825-882 AC P23426 #=GS P23426/825-882 OS Visna lentivirus (strain 1514 / clone LV1-1KS1) #=GS P23426/825-882 DE Pol polyprotein #=GS P23426/825-882 DR GENE3D; f4620fd3c1b269ddb2feccc89d55426a/825-882; #=GS P23426/825-882 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS P23426/825-882 DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 3.6.1.23; #=GS A1IVS0/62-119 AC A1IVS0 #=GS A1IVS0/62-119 OS Small ruminant lentivirus #=GS A1IVS0/62-119 DE Polyprotein #=GS A1IVS0/62-119 DR GENE3D; 0c83a79719286008a8f9daf11afd7e5b/62-119; #=GS A1IVS0/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNX2/147-204 AC Q6SNX2 #=GS Q6SNX2/147-204 OS Small ruminant lentivirus #=GS Q6SNX2/147-204 DE Pol protein #=GS Q6SNX2/147-204 DR GENE3D; 1069b0d139ed231f78b0bd220f69961f/147-204; #=GS Q6SNX2/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNW6/147-204 AC Q6SNW6 #=GS Q6SNW6/147-204 OS Small ruminant lentivirus #=GS Q6SNW6/147-204 DE Pol protein #=GS Q6SNW6/147-204 DR GENE3D; 109f4020d0f205555f2163a61c21e9e6/147-204; #=GS Q6SNW6/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNU6/147-204 AC Q6SNU6 #=GS Q6SNU6/147-204 OS Small ruminant lentivirus #=GS Q6SNU6/147-204 DE Pol protein #=GS Q6SNU6/147-204 DR GENE3D; 118b14d1c6b3bb841d69a728aa7cbfc5/147-204; #=GS Q6SNU6/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HMV4/146-203 AC A0A0B5HMV4 #=GS A0A0B5HMV4/146-203 OS Small ruminant lentivirus #=GS A0A0B5HMV4/146-203 DE Pol protein #=GS A0A0B5HMV4/146-203 DR GENE3D; 11c8ffc30f204febdaf561060cff0747/146-203; #=GS A0A0B5HMV4/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A6H2J6/147-204 AC A6H2J6 #=GS A6H2J6/147-204 OS Small ruminant lentivirus #=GS A6H2J6/147-204 DE Pol protein #=GS A6H2J6/147-204 DR GENE3D; 1c2fc1183b843bfdeaf495b0cbbf83b6/147-204; #=GS A6H2J6/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNU1/147-204 AC Q6SNU1 #=GS Q6SNU1/147-204 OS Small ruminant lentivirus #=GS Q6SNU1/147-204 DE Pol protein #=GS Q6SNU1/147-204 DR GENE3D; 1ea4a726445ed7e642945d669ad0820e/147-204; #=GS Q6SNU1/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS C9DI71/703-760 AC C9DI71 #=GS C9DI71/703-760 OS Caprine arthritis encephalitis virus #=GS C9DI71/703-760 DE Pol polyprotein #=GS C9DI71/703-760 DR GENE3D; 24c0ba94c3bf3efa570a47df55a4476f/703-760; #=GS C9DI71/703-760 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q0ZBS6/147-204 AC Q0ZBS6 #=GS Q0ZBS6/147-204 OS Visna/maedi virus #=GS Q0ZBS6/147-204 DE Pol protein #=GS Q0ZBS6/147-204 DR GENE3D; 24e5246f45abb96f288427a6a14a08c5/147-204; #=GS Q0ZBS6/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS Q6SNY5/147-204 AC Q6SNY5 #=GS Q6SNY5/147-204 OS Small ruminant lentivirus #=GS Q6SNY5/147-204 DE Pol protein #=GS Q6SNY5/147-204 DR GENE3D; 2e8262ffc8d214cff62273589c62a895/147-204; #=GS Q6SNY5/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNV4/147-204 AC Q6SNV4 #=GS Q6SNV4/147-204 OS Small ruminant lentivirus #=GS Q6SNV4/147-204 DE Pol protein #=GS Q6SNV4/147-204 DR GENE3D; 2f4f7c6e540c53c0436299f46cc74f08/147-204; #=GS Q6SNV4/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I2CJ84/136-193 AC I2CJ84 #=GS I2CJ84/136-193 OS Small ruminant lentivirus #=GS I2CJ84/136-193 DE Pol protein #=GS I2CJ84/136-193 DR GENE3D; 3b9d135b4db2d0f6db1df2b22b98d157/136-193; #=GS I2CJ84/136-193 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNV9/147-204 AC Q6SNV9 #=GS Q6SNV9/147-204 OS Small ruminant lentivirus #=GS Q6SNV9/147-204 DE Pol protein #=GS Q6SNV9/147-204 DR GENE3D; 4151a44de9f1b39acbfc4177739bb4f4/147-204; #=GS Q6SNV9/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q1ELW9/62-119 AC Q1ELW9 #=GS Q1ELW9/62-119 OS Small ruminant lentivirus #=GS Q1ELW9/62-119 DE Pol protein #=GS Q1ELW9/62-119 DR GENE3D; 49baafd8c3e3d07f8fea8ffee8abc008/62-119; #=GS Q1ELW9/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q0ZBS4/147-204 AC Q0ZBS4 #=GS Q0ZBS4/147-204 OS Caprine arthritis encephalitis virus #=GS Q0ZBS4/147-204 DE Pol protein #=GS Q0ZBS4/147-204 DR GENE3D; 4c462f0c554c54e5c2aa3671a79b5f31/147-204; #=GS Q0ZBS4/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HRJ9/146-203 AC A0A0B5HRJ9 #=GS A0A0B5HRJ9/146-203 OS Small ruminant lentivirus #=GS A0A0B5HRJ9/146-203 DE Pol protein #=GS A0A0B5HRJ9/146-203 DR GENE3D; 4cebbc1332aac91be8b7ea0760c881c4/146-203; #=GS A0A0B5HRJ9/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS C0JIG9/821-878 AC C0JIG9 #=GS C0JIG9/821-878 OS Caprine arthritis encephalitis virus Ov496 #=GS C0JIG9/821-878 DE Pol polyprotein #=GS C0JIG9/821-878 DR GENE3D; 50f63a57ee39af6e29c53bbd171f21af/821-878; #=GS C0JIG9/821-878 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F5BD98/821-878 AC F5BD98 #=GS F5BD98/821-878 OS Visna/maedi virus #=GS F5BD98/821-878 DE Pol polyprotein #=GS F5BD98/821-878 DR GENE3D; 515abc4acd8c554db266cff97a85ebf8/821-878; #=GS F5BD98/821-878 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS A1IVT2/62-119 AC A1IVT2 #=GS A1IVT2/62-119 OS Small ruminant lentivirus #=GS A1IVT2/62-119 DE Polyprotein #=GS A1IVT2/62-119 DR GENE3D; 5b61699ebd61108b7bb5cbf17a937d06/62-119; #=GS A1IVT2/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A1IVT6/62-119 AC A1IVT6 #=GS A1IVT6/62-119 OS Small ruminant lentivirus #=GS A1IVT6/62-119 DE Polyprotein #=GS A1IVT6/62-119 DR GENE3D; 5b61699ebd61108b7bb5cbf17a937d06/62-119; #=GS A1IVT6/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNY8/147-204 AC Q6SNY8 #=GS Q6SNY8/147-204 OS Small ruminant lentivirus #=GS Q6SNY8/147-204 DE Pol protein #=GS Q6SNY8/147-204 DR GENE3D; 5ffddf4e500a67864f146c1068d341e2/147-204; #=GS Q6SNY8/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I2CJ73/136-193 AC I2CJ73 #=GS I2CJ73/136-193 OS Small ruminant lentivirus #=GS I2CJ73/136-193 DE Pol protein #=GS I2CJ73/136-193 DR GENE3D; 64af88320d979715658656827c85c6c8/136-193; #=GS I2CJ73/136-193 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNY0/147-204 AC Q6SNY0 #=GS Q6SNY0/147-204 OS Small ruminant lentivirus #=GS Q6SNY0/147-204 DE Pol protein #=GS Q6SNY0/147-204 DR GENE3D; 7f9246b17fa606b64bbd4ce810974908/147-204; #=GS Q6SNY0/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNY1/147-204 AC Q6SNY1 #=GS Q6SNY1/147-204 OS Small ruminant lentivirus #=GS Q6SNY1/147-204 DE Pol protein #=GS Q6SNY1/147-204 DR GENE3D; 8f668a97c97b8e89ecf3c64674102d80/147-204; #=GS Q6SNY1/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNV8/147-204 AC Q6SNV8 #=GS Q6SNV8/147-204 OS Small ruminant lentivirus #=GS Q6SNV8/147-204 DE Pol protein #=GS Q6SNV8/147-204 DR GENE3D; 923fcc6d56d3148b21292dc81d96011e/147-204; #=GS Q6SNV8/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNV3/147-204 AC Q6SNV3 #=GS Q6SNV3/147-204 OS Small ruminant lentivirus #=GS Q6SNV3/147-204 DE Pol protein #=GS Q6SNV3/147-204 DR GENE3D; 934581885c0f42ca2462d96ec8c0951b/147-204; #=GS Q6SNV3/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNW4/147-204 AC Q6SNW4 #=GS Q6SNW4/147-204 OS Small ruminant lentivirus #=GS Q6SNW4/147-204 DE Pol protein #=GS Q6SNW4/147-204 DR GENE3D; 9440cac92fa26dda48cc91d6e05ec781/147-204; #=GS Q6SNW4/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q1ELW4/62-119 AC Q1ELW4 #=GS Q1ELW4/62-119 OS Small ruminant lentivirus #=GS Q1ELW4/62-119 DE Pol protein #=GS Q1ELW4/62-119 DR GENE3D; 9b048c4536acbaadef92b89faa513051/62-119; #=GS Q1ELW4/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HK12/146-203 AC A0A0B5HK12 #=GS A0A0B5HK12/146-203 OS Small ruminant lentivirus #=GS A0A0B5HK12/146-203 DE Pol protein #=GS A0A0B5HK12/146-203 DR GENE3D; a24711b5a401b84d11fb0ddedfc95bf4/146-203; #=GS A0A0B5HK12/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q7LZ06/805-862 AC Q7LZ06 #=GS Q7LZ06/805-862 OS Visna/maedi virus #=GS Q7LZ06/805-862 DE Pol protein #=GS Q7LZ06/805-862 DR GENE3D; a5a921bba2ae635785eabb73da052fe0/805-862; #=GS Q7LZ06/805-862 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS Q6SNX5/147-204 AC Q6SNX5 #=GS Q6SNX5/147-204 OS Small ruminant lentivirus #=GS Q6SNX5/147-204 DE Pol protein #=GS Q6SNX5/147-204 DR GENE3D; a7def64727a08297ae2f5b5f09cad670/147-204; #=GS Q6SNX5/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HA96/146-203 AC A0A0B5HA96 #=GS A0A0B5HA96/146-203 OS Small ruminant lentivirus #=GS A0A0B5HA96/146-203 DE Pol protein #=GS A0A0B5HA96/146-203 DR GENE3D; b0525da36ec453ce98ce6bbe003dcbc9/146-203; #=GS A0A0B5HA96/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6H1V5/827-884 AC Q6H1V5 #=GS Q6H1V5/827-884 OS Small ruminant lentivirus #=GS Q6H1V5/827-884 DE Pol protein #=GS Q6H1V5/827-884 DR GENE3D; b3875c8c97049f284bff614e6d8cc2dd/827-884; #=GS Q6H1V5/827-884 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNW8/147-204 AC Q6SNW8 #=GS Q6SNW8/147-204 OS Small ruminant lentivirus #=GS Q6SNW8/147-204 DE Pol protein #=GS Q6SNW8/147-204 DR GENE3D; b7ecfe6e3f51245b968d27b606d92a9c/147-204; #=GS Q6SNW8/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNZ6/147-204 AC Q6SNZ6 #=GS Q6SNZ6/147-204 OS Small ruminant lentivirus #=GS Q6SNZ6/147-204 DE Pol protein #=GS Q6SNZ6/147-204 DR GENE3D; bc9e4e6347ade28b0de2a72a230875a3/147-204; #=GS Q6SNZ6/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q0ZBS5/147-204 AC Q0ZBS5 #=GS Q0ZBS5/147-204 OS Caprine arthritis encephalitis virus #=GS Q0ZBS5/147-204 DE Pol protein #=GS Q0ZBS5/147-204 DR GENE3D; c0f1473f20227ad74d32f7bf9a55a9ba/147-204; #=GS Q0ZBS5/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HA86/146-203 AC A0A0B5HA86 #=GS A0A0B5HA86/146-203 OS Small ruminant lentivirus #=GS A0A0B5HA86/146-203 DE Pol protein #=GS A0A0B5HA86/146-203 DR GENE3D; c383ec05170322e3c799d3715fb8d27e/146-203; #=GS A0A0B5HA86/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNX1/147-204 AC Q6SNX1 #=GS Q6SNX1/147-204 OS Small ruminant lentivirus #=GS Q6SNX1/147-204 DE Pol protein #=GS Q6SNX1/147-204 DR GENE3D; c6219e4878c4ec113f5555dd2282dd9d/147-204; #=GS Q6SNX1/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A142J2Y6/815-872 AC A0A142J2Y6 #=GS A0A142J2Y6/815-872 OS Small ruminant lentivirus #=GS A0A142J2Y6/815-872 DE Pol protein #=GS A0A142J2Y6/815-872 DR GENE3D; cef18f461c650a65cf5b3db1406bafce/815-872; #=GS A0A142J2Y6/815-872 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNV2/147-204 AC Q6SNV2 #=GS Q6SNV2/147-204 OS Small ruminant lentivirus #=GS Q6SNV2/147-204 DE Pol protein #=GS Q6SNV2/147-204 DR GENE3D; d00ecc05d133e7a2f4ebc11ba9636c8a/147-204; #=GS Q6SNV2/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q8J4V1/842-899 AC Q8J4V1 #=GS Q8J4V1/842-899 OS Visna/maedi virus #=GS Q8J4V1/842-899 DE Pol polyprotein #=GS Q8J4V1/842-899 DR GENE3D; d21a5838a5a3ce4d37fd5a4db01ad917/842-899; #=GS Q8J4V1/842-899 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS E0ZN12/823-880 AC E0ZN12 #=GS E0ZN12/823-880 OS Small ruminant lentivirus #=GS E0ZN12/823-880 DE Pol polyprotein #=GS E0ZN12/823-880 DR GENE3D; d6780ad0ac4f5ce575bcb2cb5f09dc3f/823-880; #=GS E0ZN12/823-880 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A1IVS3/62-119 AC A1IVS3 #=GS A1IVS3/62-119 OS Small ruminant lentivirus #=GS A1IVS3/62-119 DE Polyprotein #=GS A1IVS3/62-119 DR GENE3D; d68c1bc1771bce5a3bd63a5ec08a549d/62-119; #=GS A1IVS3/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A1IVS7/62-119 AC A1IVS7 #=GS A1IVS7/62-119 OS Small ruminant lentivirus #=GS A1IVS7/62-119 DE Polyprotein #=GS A1IVS7/62-119 DR GENE3D; da9dbb679d1eb86fdcdcf383db6a3d76/62-119; #=GS A1IVS7/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I2CJC0/136-193 AC I2CJC0 #=GS I2CJC0/136-193 OS Small ruminant lentivirus #=GS I2CJC0/136-193 DE Pol protein #=GS I2CJC0/136-193 DR GENE3D; dce7db481771fc3755799d9dac92677f/136-193; #=GS I2CJC0/136-193 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A1IVS6/62-119 AC A1IVS6 #=GS A1IVS6/62-119 OS Small ruminant lentivirus #=GS A1IVS6/62-119 DE Polyprotein #=GS A1IVS6/62-119 DR GENE3D; e0961d7e89611c41616b4349d7575135/62-119; #=GS A1IVS6/62-119 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNW2/147-204 AC Q6SNW2 #=GS Q6SNW2/147-204 OS Small ruminant lentivirus #=GS Q6SNW2/147-204 DE Pol protein #=GS Q6SNW2/147-204 DR GENE3D; e766fb02c0695869fbfde8d4ac807bc8/147-204; #=GS Q6SNW2/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SNW1/147-204 AC Q6SNW1 #=GS Q6SNW1/147-204 OS Small ruminant lentivirus #=GS Q6SNW1/147-204 DE Pol protein #=GS Q6SNW1/147-204 DR GENE3D; e766fb02c0695869fbfde8d4ac807bc8/147-204; #=GS Q6SNW1/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I2CJ85/136-193 AC I2CJ85 #=GS I2CJ85/136-193 OS Small ruminant lentivirus #=GS I2CJ85/136-193 DE Pol protein #=GS I2CJ85/136-193 DR GENE3D; ea6bf518e0d4fa8e4a85a681871d509e/136-193; #=GS I2CJ85/136-193 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q7ZSJ9/696-753 AC Q7ZSJ9 #=GS Q7ZSJ9/696-753 OS Ovine lentivirus #=GS Q7ZSJ9/696-753 DE Pol polyprotein #=GS Q7ZSJ9/696-753 DR GENE3D; ef040c1c0ed8b540b35a0a8ae11c873d/696-753; #=GS Q7ZSJ9/696-753 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Ovine lentivirus; #=GS Q6SNY2/147-204 AC Q6SNY2 #=GS Q6SNY2/147-204 OS Small ruminant lentivirus #=GS Q6SNY2/147-204 DE Pol protein #=GS Q6SNY2/147-204 DR GENE3D; efae1a1d200800ae8a6b0edab3130bff/147-204; #=GS Q6SNY2/147-204 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HE25/146-203 AC A0A0B5HE25 #=GS A0A0B5HE25/146-203 OS Small ruminant lentivirus #=GS A0A0B5HE25/146-203 DE Pol protein #=GS A0A0B5HE25/146-203 DR GENE3D; f91a2b88432efc311b661edec87de35d/146-203; #=GS A0A0B5HE25/146-203 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q108J1/1-47 AC Q108J1 #=GS Q108J1/1-47 OS Ovine lentivirus #=GS Q108J1/1-47 DE Integrase #=GS Q108J1/1-47 DR GENE3D; 0db20ae8f8fb0f20241d631466cf0175/1-47; #=GS Q108J1/1-47 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Ovine lentivirus; #=GF TC 107.2 7.7E-34 #=GF SQ 66 3hpgA01/1-59 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRG P33459/830-887 WIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEARTPAVIRGGNKR- 3hpgB01/1-58 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- 3hpgE01/1-59 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKRG 3hpgF01/1-58 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- 3hphB01/1-58 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- 3hphC01/1-58 MVENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- P23427/825-882 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- P03370/825-882 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- P35956/821-878 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- P16901/806-863 WIENIPLAEEDHSKWHQDAGSLHLDFGIPRTAAEDIVQQCEVCQENKMPSTIRGSNRR- Q1W0S4/806-863 WIENIPLAEEDHSKWHQDAGSLHLDFGIPRTAAEDIVQQCEVCQENKMPSTIRGSNRR- P23426/825-882 WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPSTLRGSNKR- A1IVS0/62-119 WIENIPAAEEDHDKWHQDALSLQLEFGIPRTAAEDIVQQCEVCQENKMPSTLRGGNKR- Q6SNX2/147-204 WIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDIVNQCEICQEERTPSVSRGGNKR- Q6SNW6/147-204 WIENIPKAEEDHNKWHQDANSLHVEFKIPKTAAEDIVQQCDICQENKGASNLRGGNKR- Q6SNU6/147-204 WIENIPRAEEEHSKWHQDARSLHLEFEIPRTAAEDIVSQCEICQEEKAPSVIRGGNKR- A0A0B5HMV4/146-203 WIENIPLAEEDHAKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEGKAPSVIRGGNKR- A6H2J6/147-204 WIENIPRAEEDHDRWHQDALSLHLDYGIPRAAAEDIVQQCEVCQENKMPSTQRGGNKR- Q6SNU1/147-204 WIENIPLAEEDHNKWHQDAMSLQLDFGIPRTAAEDIVQQCEVCQESKMPSTIRGSNKR- C9DI71/703-760 WIERIPEAEEEHLKWHQDARSLQLDFGIPRNAAEEIVQNCEVCQEGKMPSTLRGGNSR- Q0ZBS6/147-204 WIENIPLAEEEHSKWHQDASSLQLEFKIPKMAAEDIVQQCEICQENKEANPLRGSNKR- Q6SNY5/147-204 WIENIPLAEEDHSKWHQDARSLHLEFEIPRTAAEDIVNQCDICKEERAPSVMRGGNKR- Q6SNV4/147-204 WIENIPLAEEEHSKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEEKAPSVIRGGNKR- I2CJ84/136-193 WIENIPKAEEDHAKWHQDATSLHLDFGIPKSAAEDIVQHCEVCQENKMPSTIRGGNKR- Q6SNV9/147-204 WIENIPLAEEDHAKWHQDAQSLHLEFEIPKTAAEDIINQCEICKEEKAPSVMRGGNKR- Q1ELW9/62-119 WIENISAAEEDHEKWHQDALSLHLAYGIPRAAAEDIVQQCDTCQENKMPSTARGGNKR- Q0ZBS4/147-204 WIEKIPTAEEDHAKWHQDANSLHWEFGIPKTAAEDIVQQCDVCQENKMPSTNRGGNKR- A0A0B5HRJ9/146-203 WIENIPLAEEDHTKWHQDAKSLQLEFEIPRTVAEDIVNQCEICQEEKAPSVIRGGNKR- C0JIG9/821-878 WIENIPIAEEEHAKWHQDAQSLHLEFNIPRTAAEDIVSQCETCQQEKAPSIIRGSNKR- F5BD98/821-878 WIENIPKAEEDHAKWHQDANSMHLEYGIPRTAAEDIVRQCEVCQENKMPSTLRGGNKR- A1IVT2/62-119 WIENIPQAEEDHAKWHQDARSLHLEFEIPRTAAEDIVNQCEVCKEEKAASVIRGGNKR- A1IVT6/62-119 WIENIPQAEEDHAKWHQDARSLHLEFEIPRTAAEDIVNQCEVCKEEKAASVIRGGNKR- Q6SNY8/147-204 WIENIPKAEEDHGKWHQDASSLQLEFGIPRSAAEDIIQHCEICQENKMPSTLRGGNKR- I2CJ73/136-193 WIENIPLAEEEHSKWHQDARSLHLEFEIPRTAAEDIVNQCEVCREEKAPSVLRGGNKR- Q6SNY0/147-204 WIENIPKAEEDHDKWHQDANSLHLEFGIPRSAAEDIIQQCEVCQENRMPSTLRGGNKR- Q6SNY1/147-204 WIENIPLAEEDHAKWHQDARSLHLDFEIPRTAAEDIVNQCEICQEEKAPSIIRGGNKR- Q6SNV8/147-204 WIENIPRAEEEHDKWHQDALSLHLTYGIPKSAAEDIVQQCEICQEHKMPSTLRGGNKR- Q6SNV3/147-204 WIENIPLAEEEHSKWHQDARSLHLDFEIPKTAAEDIVNQCEICQEEKAPSIIRGGNKR- Q6SNW4/147-204 WIENIPLAEEEHAKWHQDARSLHLEFEIPRTAAEDIVNQCEICQEDKAPSVIRGGNKR- Q1ELW4/62-119 WIENIPIAEEDHSKWHQDALSLHLTYGIPRTAAEDIVQQCETCQENKVPSTSRGGNKI- A0A0B5HK12/146-203 WIENIPRAEEDHEKWHQDANSLHLEFGIPRSAAEDIIQQCEVCQENKMPSTLRGGNKR- Q7LZ06/805-862 WIENIPLAEEDHSKWHQDAQSLHLEFDIPRTAAQDIVQQCEICQENKMPNTMRGSNKR- Q6SNX5/147-204 WIENIPLAEEEHAKWHQDARSLHLEFEIPRTAAEDIVNQCEICQEEKAPAVSRGGNKR- A0A0B5HA96/146-203 WIENIPRAEEDHDKWHQDANSLHLEFGIPKSAAEDIVQQCEVCRENKMPSTLRGGNKR- Q6H1V5/827-884 WIENIPLAEEEHNKWHQDATSLHLDFGIPKSAAEDIIQQCESCQENKMPSAIRGGNKR- Q6SNW8/147-204 WIENIPVAEEEHAKWHQDARSLHLEFEIPRTAAEDIVNQCEICQEEKAPSVIRGGNKR- Q6SNZ6/147-204 WIENIPMAEEDHTKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEGRTPAVIRGGNKR- Q0ZBS5/147-204 WIENIPKAEEEHTKWHQDARSLHLDFGISKAAAEDIVQQCEVCQENKMPNTLRGGNKR- A0A0B5HA86/146-203 WIEDIPKAEEDHNKWHQDAKSLHLEFGIPRSAAEDIIQQCEVCQENKMPSTLRGGNKR- Q6SNX1/147-204 WIENIPLAEEDHTKWHQDARSLQLEFEIPRTAAEDIVNQCDICQEEKAPSVIRGGNKR- A0A142J2Y6/815-872 WIEQIPQAEEEHAKWHQDANSLHLTFGIPKSAAEDIVQQCDICQEGKLPSPVRGGNKR- Q6SNV2/147-204 WIENIPLAEEEHAKWHQDAQSLHLDFEIPRTAAEDIVNQCEICQEGKAPSIIRGGNKR- Q8J4V1/842-899 WIENIPKAEEDHNKWHQDANSLHLEFGIPRSAAEDIVQQCEVCQENKMPSTLRGGNKR- E0ZN12/823-880 WIENIPLAEEEHTKWHQDANSLHLEFEIPRTAAEDIVNQCEICQTEKAPSVIRGGNKR- A1IVS3/62-119 WIENIPRAEEDHEKWHQDAMSLHLDFGIPRTAAEDIVQQCEVCQENKIPSNIRGGNKR- A1IVS7/62-119 WIENIPVAEEDHEKWHQDALSLHLTYGIPRSAAEEIVQQCDTCQENKMPSNIRGGNKR- I2CJC0/136-193 WIENIPKAEEDHNKWHQDAMSLHLDFGIPRTAAEDIVQRCEICQENKMPSTMRGSNKR- A1IVS6/62-119 WIENIPRAEEDHDKWHQDATSLHLDFGIPRAAAEDIIQQCEICQENKMPSNIRGGNKR- Q6SNW2/147-204 WIENIPLAEEEHNKWHQDATSLHLDFGIPKSAAEDIIQQCESCQENKMPSAIRGGNKR- Q6SNW1/147-204 WIENIPLAEEEHNKWHQDATSLHLDFGIPKSAAEDIIQQCESCQENKMPSAIRGGNKR- I2CJ85/136-193 WIENIPKAEEDHGKWHQDAGSLHLDFGIPKTAAEDIVQQCEVCQENKMPSTHRGGNKR- Q7ZSJ9/696-753 WVENIPIAEEDHHRWHQDAMSLQLSFGIPRAAAEDIVQQCEVCQESKMSSTIRGGNKR- Q6SNY2/147-204 WIENIPLAEEDHAKWHQDARSLHLEFEIPRTAAEDIVNQCDICREEKAPSVIRGGNKR- A0A0B5HE25/146-203 WIENIPKAEEDHDKWHQDANSLHLEFGIPRSVAEEIVQQCEVCQEDKRPSTLRGGNKR- Q108J1/1-47 -----------HSKWHQDAMSLQLDFGIPKGAAEDIVQQCEVCQENKMPSTIRGSNKR- #=GC scorecons 77878838886948999993987868698768988986897697858588559969880 #=GC scorecons_70 ******_*****_******_******_***_******_*******_*_**__******_ #=GC scorecons_80 _*****_***_*_******_****_*_***_******_***_***_*_**__**_***_ #=GC scorecons_90 __*_**_***_*_******_**_*_*_**__******_**__*_*_*_*___**_***_ //