# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/98040
#=GF DE Transcription factor E
#=GF AC 1.10.10.10/FF/98040
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 40.845
#=GS A0RYF4/2-88      AC A0RYF4
#=GS A0RYF4/2-88      OS Cenarchaeum symbiosum A
#=GS A0RYF4/2-88      DE Transcription factor E
#=GS A0RYF4/2-88      DR GENE3D; 24022de7f1a347f28dfc90e4960b8484/2-88; 
#=GS A0RYF4/2-88      DR ORG; Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarchaeum; Cenarchaeum symbiosum; 
#=GS A9A625/2-88      AC A9A625
#=GS A9A625/2-88      OS Nitrosopumilus maritimus SCM1
#=GS A9A625/2-88      DE Transcription factor E
#=GS A9A625/2-88      DR GENE3D; 7433b03f4d7a79411f891f41ef55012d/2-88; 
#=GS A9A625/2-88      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS F3KLI5/1-74      AC F3KLI5
#=GS F3KLI5/1-74      OS Candidatus Nitrosoarchaeum limnia SFB1
#=GS F3KLI5/1-74      DE Transcription factor E
#=GS F3KLI5/1-74      DR GENE3D; 0728e5d1e8ec0170d360c5ecbb4eebf9/1-74; 
#=GS F3KLI5/1-74      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum; Candidatus Nitrosoarchaeum limnia; 
#=GS A0A075H0T8/4-89  AC A0A075H0T8
#=GS A0A075H0T8/4-89  OS uncultured marine thaumarchaeote KM3_204_F10
#=GS A0A075H0T8/4-89  DE Transcription factor E
#=GS A0A075H0T8/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075H0T8/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_204_F10; 
#=GS A0A075GR37/4-89  AC A0A075GR37
#=GS A0A075GR37/4-89  OS uncultured marine thaumarchaeote KM3_172_D05
#=GS A0A075GR37/4-89  DE Transcription factor E
#=GS A0A075GR37/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075GR37/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_172_D05; 
#=GS A0A075H3R0/4-89  AC A0A075H3R0
#=GS A0A075H3R0/4-89  OS uncultured marine thaumarchaeote KM3_47_A03
#=GS A0A075H3R0/4-89  DE Transcription factor E
#=GS A0A075H3R0/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075H3R0/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_47_A03; 
#=GS A0A075H8M1/4-89  AC A0A075H8M1
#=GS A0A075H8M1/4-89  OS uncultured marine thaumarchaeote KM3_47_A04
#=GS A0A075H8M1/4-89  DE Transcription factor E
#=GS A0A075H8M1/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075H8M1/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_47_A04; 
#=GS A0A075GFK8/4-89  AC A0A075GFK8
#=GS A0A075GFK8/4-89  OS uncultured marine thaumarchaeote KM3_157_H08
#=GS A0A075GFK8/4-89  DE Transcription factor E
#=GS A0A075GFK8/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075GFK8/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_157_H08; 
#=GS A0A075G6P1/4-89  AC A0A075G6P1
#=GS A0A075G6P1/4-89  OS uncultured marine thaumarchaeote KM3_107_D09
#=GS A0A075G6P1/4-89  DE Transcription factor E
#=GS A0A075G6P1/4-89  DR GENE3D; 1064681a250f08ad055f74c3508c29c5/4-89; 
#=GS A0A075G6P1/4-89  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_107_D09; 
#=GS V6AQW9/2-88      AC V6AQW9
#=GS V6AQW9/2-88      OS Thaumarchaeota archaeon N4
#=GS V6AQW9/2-88      DE Transcription factor E
#=GS V6AQW9/2-88      DR GENE3D; 20a1554458b6113180876aaba6d8921f/2-88; 
#=GS V6AQW9/2-88      DR ORG; Archaea; Thaumarchaeota; Thaumarchaeota archaeon N4; 
#=GS A0A075GYA6/2-88  AC A0A075GYA6
#=GS A0A075GYA6/2-88  OS uncultured marine thaumarchaeote KM3_25_B05
#=GS A0A075GYA6/2-88  DE Transcription factor E
#=GS A0A075GYA6/2-88  DR GENE3D; 6a1c00ded711547723ba2d2c0826ac31/2-88; 
#=GS A0A075GYA6/2-88  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_25_B05; 
#=GS A0A075FRN8/2-88  AC A0A075FRN8
#=GS A0A075FRN8/2-88  OS uncultured marine thaumarchaeote AD1000_21_H05
#=GS A0A075FRN8/2-88  DE Transcription initiation factor IIE, alpha subunit (TFIIE1, GTF2E1, TFA1, tfe)
#=GS A0A075FRN8/2-88  DR GENE3D; 8dce01f6d59020b55ff8e41c195676b2/2-88; 
#=GS A0A075FRN8/2-88  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote AD1000_21_H05; 
#=GS A0A075H2N4/7-92  AC A0A075H2N4
#=GS A0A075H2N4/7-92  OS uncultured marine thaumarchaeote KM3_36_H05
#=GS A0A075H2N4/7-92  DE Transcription factor E
#=GS A0A075H2N4/7-92  DR GENE3D; a7d818720601593be1bdda1aad8ad911/7-92; 
#=GS A0A075H2N4/7-92  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_36_H05; 
#=GS A0A0P8Y2Q5/2-88  AC A0A0P8Y2Q5
#=GS A0A0P8Y2Q5/2-88  OS Nitrosopumilus sp. PRT-SC01
#=GS A0A0P8Y2Q5/2-88  DE Transcription factor E
#=GS A0A0P8Y2Q5/2-88  DR GENE3D; b164d276db45709b849fe0d8ae2ec13d/2-88; 
#=GS A0A0P8Y2Q5/2-88  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp. PRT-SC01; 
#=GS A0A0T5ZG90/2-88  AC A0A0T5ZG90
#=GS A0A0T5ZG90/2-88  OS Thaumarchaeota archaeon CSP1-1
#=GS A0A0T5ZG90/2-88  DE Transcription factor E
#=GS A0A0T5ZG90/2-88  DR GENE3D; d3bece12157cdb1e68c381f701226cd7/2-88; 
#=GS A0A0T5ZG90/2-88  DR ORG; Archaea; Thaumarchaeota; Thaumarchaeota archaeon CSP1-1; 
#=GS B3TA71/1-74      AC B3TA71
#=GS B3TA71/1-74      OS uncultured marine crenarchaeote HF4000_APKG8D6
#=GS B3TA71/1-74      DE Transcription factor E
#=GS B3TA71/1-74      DR GENE3D; df05b5eb10022e344b9a19e4bd9b0a49/1-74; 
#=GS B3TA71/1-74      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; uncultured marine crenarchaeote HF4000_APKG8D6; 
#=GS A0A0A7V1U2/2-88  AC A0A0A7V1U2
#=GS A0A0A7V1U2/2-88  OS Candidatus Nitrosopelagicus brevis
#=GS A0A0A7V1U2/2-88  DE Transcription factor E
#=GS A0A0A7V1U2/2-88  DR GENE3D; e0f61dd82edc7c9b2d3858a635af85af/2-88; 
#=GS A0A0A7V1U2/2-88  DR ORG; Archaea; Thaumarchaeota; Candidatus Nitrosopelagicus; Candidatus Nitrosopelagicus brevis; 
#=GS A0A075HZQ0/2-88  AC A0A075HZQ0
#=GS A0A075HZQ0/2-88  OS uncultured marine thaumarchaeote KM3_98_B07
#=GS A0A075HZQ0/2-88  DE Transcription factor E
#=GS A0A075HZQ0/2-88  DR GENE3D; ea2b66b964e8c24305ece1f8553554de/2-88; 
#=GS A0A075HZQ0/2-88  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_98_B07; 
#=GS A0A075HJ00/6-92  AC A0A075HJ00
#=GS A0A075HJ00/6-92  OS uncultured marine thaumarchaeote KM3_71_H11
#=GS A0A075HJ00/6-92  DE Transcription factor E
#=GS A0A075HJ00/6-92  DR GENE3D; f3fde61b569f98b79f64f733777a0dcd/6-92; 
#=GS A0A075HJ00/6-92  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote KM3_71_H11; 
#=GS A0A075FRT6/2-86  AC A0A075FRT6
#=GS A0A075FRT6/2-86  OS uncultured marine thaumarchaeote AD1000_20_B03
#=GS A0A075FRT6/2-86  DE Transcription factor E
#=GS A0A075FRT6/2-86  DR GENE3D; d34bc894bd3de811c47e2897119608bb/2-86; 
#=GS A0A075FRT6/2-86  DR ORG; Archaea; Thaumarchaeota; uncultured marine thaumarchaeote AD1000_20_B03; 
#=GF TC 165.7 1.6E-52
#=GF SQ 20
A0RYF4/2-88              IDKYEDPFIRIAVMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLISGVRVKDERKGWFVYRWRSRREEVE
A9A625/2-88              VDKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
F3KLI5/1-74              -------------MIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A075H0T8/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075GR37/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075H3R0/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075H8M1/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075GFK8/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
A0A075G6P1/4-89          -DKYEDPFVKISFMIGGDEYLKVARSLLKSKDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRSRREEVE
V6AQW9/2-88              VESYEDPFVRISAMIGGDEYLKVARALLKAEDATDEEIASSTGLRINMVRKVLYDLFGKALITGIRVKDERKGWFVYRWRSRKDEVE
A0A075GYA6/2-88          VDKYENPFAKISAMIGGDEYLKVSRSLLKSEDATDEEIASSTGLRINMVRKVLYDLFGKGLITGIRVKDERKGWFVYRWRSRRDEVE
A0A075FRN8/2-88          IDKYEDPFVKISYMIGGDEYLKVARSLLKSQDGTDEEIASSTGLRINMVRKVLYDLFGKALITGVRVKDERKGWFVYRWRSRRDEVE
A0A075H2N4/7-92          -DKYEDPFVKISQMIGGDEYLKVARSLIKAQDATDEEIASYTGLRINMVRKVLYDLFGKSLITGVRVKDERKGWFVYRWRSRRDEVE
A0A0P8Y2Q5/2-88          IDKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGKSLITGIRVKDERKGWFVYRWRTRREEVE
A0A0T5ZG90/2-88          IDKYEDPFVRISTMIGGDEYLKVARSLLKSEDATDEEIASSTGLRINMVRKVLYDLFGKALITGIRVKDEKKGWFVYRWRSRRDEVE
B3TA71/1-74              -------------MLGGDEYLKVARSLLKSQDATDEEIASSTGLRINMVRKVLYDLFGKALITGVRVKDERKGWFVYRWRSRRDEVE
A0A0A7V1U2/2-88          VDKYEDPFVKISAMIGGDEYLKVARSLLKTEDATDEEIASSTGLRINMVRRVLYDLFGKGLITGVRVKDERKGWFVYRWRSRRDEVE
A0A075HZQ0/2-88          IDKYEDPFVKISYMIGGDEYLKVARSLLKSQDATDEEIASSTGLRINMVRKVLYDLFGKALITGVRVKDERKGWFVYRWRSRRDEVE
A0A075HJ00/6-92          IDKYEEPFVKISNMIGGDEYLKVARSLLKAQDATDEEIASSTGLRINMVRKVLYDLFGKALITGIRVKDDKKGWFVYRWRTRRDEVE
A0A075FRT6/2-86          IDKYEDPFVKISYMIGGDEYLKVARSLLKVQDATDEEIASSTGLRINMVRKVLYDLFGKALITGVRVKDDRKGWFVYRWRSRRDE--
#=GC scorecons           154554554454297999999998989895598999999989999999998999999995998979999889999999996987977
#=GC scorecons_70        _____________****************__****************************_***************************
#=GC scorecons_80        _____________****************__****************************_****_***************_**_***
#=GC scorecons_90        _____________*_**************__****************************_****_***************_**_*__
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