# STOCKHOLM 1.0 #=GF ID 1.10.10.10/FF/266157 #=GF DE Transcriptional regulator, LuxR family #=GF AC 1.10.10.10/FF/266157 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 97.366 #=GS A1B6C9/156-219 AC A1B6C9 #=GS A1B6C9/156-219 OS Paracoccus denitrificans PD1222 #=GS A1B6C9/156-219 DE Two component transcriptional regulator, LuxR family #=GS A1B6C9/156-219 DR GENE3D; db002bb44f2cf7bcbee7be31831259a5/156-219; #=GS A1B6C9/156-219 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus; Paracoccus denitrificans; #=GS B9TJT8/176-267 AC B9TJT8 #=GS B9TJT8/176-267 OS Ricinus communis #=GS B9TJT8/176-267 DE Response regulator gacA, putative #=GS B9TJT8/176-267 DR GENE3D; 3c1e9d777ccde6474c97d166e9353ee3/176-267; #=GS B9TJT8/176-267 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus; Ricinus communis; #=GS A0A0J7JXF1/66-141 AC A0A0J7JXF1 #=GS A0A0J7JXF1/66-141 OS Lasius niger #=GS A0A0J7JXF1/66-141 DE Excinuclease abc subunit c #=GS A0A0J7JXF1/66-141 DR GENE3D; ee5f8bcbd9c4153b51ef7f23d0398322/66-141; #=GS A0A0J7JXF1/66-141 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Vespoidea; Formicidae; Formicinae; Lasiini; Lasius; Lasius; Lasius niger; #=GS X0SSC1/3-96 AC X0SSC1 #=GS X0SSC1/3-96 OS marine sediment metagenome #=GS X0SSC1/3-96 DE Uncharacterized protein #=GS X0SSC1/3-96 DR GENE3D; 4e02ba8310dc548d0584bde4939f545f/3-96; #=GS X0SSC1/3-96 DR ORG; marine sediment metagenome; #=GS A0A0T9WJ50/105-216 AC A0A0T9WJ50 #=GS A0A0T9WJ50/105-216 OS Salmonella enterica subsp. enterica serovar Bovismorbificans #=GS A0A0T9WJ50/105-216 DE Invasion response-regulator #=GS A0A0T9WJ50/105-216 DR GENE3D; 558990eef4c70fecd7725ee3060af84f/105-216; #=GS A0A0T9WJ50/105-216 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0A1HXC8/3-52 AC A0A0A1HXC8 #=GS A0A0A1HXC8/3-52 OS Pseudomonas sp. SHC52 #=GS A0A0A1HXC8/3-52 DE BarA-associated response regulator UvrY (= GacA = SirA) #=GS A0A0A1HXC8/3-52 DR GENE3D; 68de7ea4a9d1bfcc456dfeca918a2b3d/3-52; #=GS A0A0A1HXC8/3-52 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. SHC52; #=GS A4CG08/1-92 AC A4CG08 #=GS A4CG08/1-92 OS Pseudoalteromonas tunicata D2 #=GS A4CG08/1-92 DE Response regulator #=GS A4CG08/1-92 DR GENE3D; 72d4e4a37ff56d53a8f00726f1f05098/1-92; #=GS A4CG08/1-92 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; Pseudoalteromonas tunicata; #=GS W1FYN7/1-54 AC W1FYN7 #=GS W1FYN7/1-54 OS Escherichia coli ISC11 #=GS W1FYN7/1-54 DE BarA-associated response regulator UvrY (= GacA = SirA) #=GS W1FYN7/1-54 DR GENE3D; 7cc9f2b611b660130453126cdf7d5d70/1-54; #=GS W1FYN7/1-54 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS J2E517/6-78 AC J2E517 #=GS J2E517/6-78 OS Klebsiella pneumoniae subsp. pneumoniae DSM 30104 #=GS J2E517/6-78 DE Response regulator receiver domain protein #=GS J2E517/6-78 DR GENE3D; a2439babb220bae0d4a2f1787583141f/6-78; #=GS J2E517/6-78 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae; Klebsiella pneumoniae subsp. pneumoniae; #=GS W1XQW2/1-74 AC W1XQW2 #=GS W1XQW2/1-74 OS human gut metagenome #=GS W1XQW2/1-74 DE Uncharacterized protein #=GS W1XQW2/1-74 DR GENE3D; abb4a809a5ba660ecd189b329622505a/1-74; #=GS W1XQW2/1-74 DR ORG; human gut metagenome; #=GS A0A1G0H416/1-60 AC A0A1G0H416 #=GS A0A1G0H416/1-60 OS Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_11 #=GS A0A1G0H416/1-60 DE Uncharacterized protein #=GS A0A1G0H416/1-60 DR GENE3D; ad3ad47053e1871274acee6404879564/1-60; #=GS A0A1G0H416/1-60 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_11; #=GS G9Z907/6-124 AC G9Z907 #=GS G9Z907/6-124 OS Yokenella regensburgei ATCC 43003 #=GS G9Z907/6-124 DE Transcriptional regulator, LuxR family #=GS G9Z907/6-124 DR GENE3D; ae5b7cad9337a6d45b4d955e563c66a3/6-124; #=GS G9Z907/6-124 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yokenella; Yokenella regensburgei; #=GS A0A0H5YXJ9/1-55 AC A0A0H5YXJ9 #=GS A0A0H5YXJ9/1-55 OS Vibrio cholerae #=GS A0A0H5YXJ9/1-55 DE BarA-associated response regulator UvrY #=GS A0A0H5YXJ9/1-55 DR GENE3D; c0c261a55989d85f4b10cd663d6e8521/1-55; #=GS A0A0H5YXJ9/1-55 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS K2K839/98-214 AC K2K839 #=GS K2K839/98-214 OS Idiomarina xiamenensis 10-D-4 #=GS K2K839/98-214 DE Response regulator #=GS K2K839/98-214 DR GENE3D; c5c6e0be95516fb6a782fa6d0f101c51/98-214; #=GS K2K839/98-214 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; Idiomarina xiamenensis; #=GS A0A090T875/1-103 AC A0A090T875 #=GS A0A090T875/1-103 OS Vibrio maritimus #=GS A0A090T875/1-103 DE BarA-associated response regulator UvrY #=GS A0A090T875/1-103 DR GENE3D; da05caeebe2229ce07f68f3863fff475/1-103; #=GS A0A090T875/1-103 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio maritimus; #=GS A0A0Q0BSV5/7-122 AC A0A0Q0BSV5 #=GS A0A0Q0BSV5/7-122 OS Pseudomonas amygdali pv. tabaci #=GS A0A0Q0BSV5/7-122 DE DNA-binding response regulator GacA #=GS A0A0Q0BSV5/7-122 DR GENE3D; ec01dd6769fe6936c92685cc46fb318a/7-122; #=GS A0A0Q0BSV5/7-122 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 2; Pseudomonas amygdali; #=GS P29904/156-219 AC P29904 #=GS P29904/156-219 OS Paracoccus denitrificans #=GS P29904/156-219 DE Methanol utilization control regulatory protein MoxX #=GS P29904/156-219 DR GENE3D; db002bb44f2cf7bcbee7be31831259a5/156-219; #=GS P29904/156-219 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus; Paracoccus denitrificans; #=GF TC 82.0 1.1E-26 #=GF SQ 17 A1B6C9/156-219 ---------------------------------------------GTSAPRLTGREEEILGMITEGMSYRDIADRACISYKTVSNVSLVLKDKLGAANLADLVVKGIRY---------- B9TJT8/176-267 -------------------ILNGKTYLSPEIARKIALQTLEDK--GDPMQQLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGITSPVEMVRLAIRHGVIE------ A0A0J7JXF1/66-141 -------------------VHAGQRYIASDIAQQMALSQLEPQ-AETPFSCLSERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYPVNDRFDA----------------------- X0SSC1/3-96 -------------------EFA--LYLSPTIANQLALKQVNHQ-SSSPFDVLTERELQVMLMITKGLKVQEISDKLCLSPKTVNSHRYKLFEKLKIQSDVELTLLAIRHGMLDEDA--- A0A0T9WJ50/105-216 -------XXXXXXVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLTS A0A0A1HXC8/3-52 ---------------------------------------------------------------VGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMVD------ A4CG08/1-92 ------------------------RYIAPEIAQQIALAQFSGRSDENPFKSLSDRELQIMLMITRGEKVQNIADQLNLSSKTVNSYRYRMFEKLGIGGDVELTHLAIRHKMIEIDT--- W1FYN7/1-54 -----------------------------------------------------------MLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCN------ J2E517/6-78 ---------------------------------------IEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLC------- W1XQW2/1-74 ------------------SVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRTYW--------------------------- A0A1G0H416/1-60 ---------------------------------------------------MSERELQVMMMITRGTNVQLIAESLHLSAKTVNSYRYRIFIKLKVKNDVELTLLAIRYGI-------- G9Z907/6-124 AGYLSKGAAPQEVVNAIRSVFAGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAESLAS A0A0H5YXJ9/1-55 -----------------------------------------------------------MLMITKGQKVTDISEQLSLSPKTVNSYRCRLFAKLNINGDVELTHLAIRHGILDT----- K2K839/98-214 EGYLLDNGSTDDLLQACAALDRGKMFVAADVAAYFARRPHAEG-KGRMLDKLSERELQVTLMLARGMRVAQIAQHLSISGKTVNTFRYRIFSKLGVAGDVALSHLAIRAGLVDIEKLA- A0A090T875/1-103 ------------MVNAIRLVNSGQRYISPEIAQQMALSQFSSA-SENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTET--- A0A0Q0BSV5/7-122 AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMVDASA--- P29904/156-219 ---------------------------------------------GTSAPRLTGREEEILGMITEGMSYRDIADRACISYKTVSNVSLVLKDKLGAANLADLVVKGIRY---------- #=GC scorecons 00000000000000000001011112211122121221111110122322154455345547665745644966574794999656665553773523455643556654312000000 #=GC scorecons_70 _____________________________________________________________***_*__*__***_*_**_****_**_____**_______*_____*___________ #=GC scorecons_80 _____________________________________________________________*___*_____*___*_**_***_________**_________________________ #=GC scorecons_90 _______________________________________________________________________*______*_***____________________________________ //