# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/265094
#=GF DE RNA polymerase sigma-54 factor
#=GF AC 1.10.10.10/FF/265094
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 78.511
#=GS A4BQM1/317-403      AC A4BQM1
#=GS A4BQM1/317-403      OS Nitrococcus mobilis Nb-231
#=GS A4BQM1/317-403      DE RNA polymerase sigma-54 factor
#=GS A4BQM1/317-403      DR GENE3D; 8a9720425233df2781078552bde6871f/317-403; 
#=GS A4BQM1/317-403      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus; Nitrococcus mobilis; 
#=GS E2RWF1/155-222      AC E2RWF1
#=GS E2RWF1/155-222      OS uncultured bacterium
#=GS E2RWF1/155-222      DE RNA polymerase factor sigma-54
#=GS E2RWF1/155-222      DR GENE3D; 43a42dd3b27503ec7e63a312cf0b8467/155-222; 
#=GS E2RWF1/155-222      DR ORG; Bacteria; uncultured bacterium; 
#=GS A0A087MJH9/323-386  AC A0A087MJH9
#=GS A0A087MJH9/323-386  OS Arenimonas donghaensis DSM 18148 = HO3-R19
#=GS A0A087MJH9/323-386  DE RNA polymerase sigma-54 factor
#=GS A0A087MJH9/323-386  DR GENE3D; 1b9a4be38015bfd1ea865545a1654eb3/323-386; 
#=GS A0A087MJH9/323-386  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas; Arenimonas donghaensis; 
#=GS A1K2R6/329-397      AC A1K2R6
#=GS A1K2R6/329-397      OS Azoarcus sp. BH72
#=GS A1K2R6/329-397      DE RNA polymerase sigma-54 factor
#=GS A1K2R6/329-397      DR GENE3D; 770409ed8a2f51a1faa3c6186f0d2139/329-397; 
#=GS A1K2R6/329-397      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus; Azoarcus sp. BH72; 
#=GS V4YQK8/392-469      AC V4YQK8
#=GS V4YQK8/392-469      OS Betaproteobacteria bacterium MOLA814
#=GS V4YQK8/392-469      DE RNA polymerase sigma-54 factor
#=GS V4YQK8/392-469      DR GENE3D; a393020ae8ce259f3fce48f7e938516a/392-469; 
#=GS V4YQK8/392-469      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Betaproteobacteria bacterium MOLA814; 
#=GS T1A7R7/223-284      AC T1A7R7
#=GS T1A7R7/223-284      OS mine drainage metagenome
#=GS T1A7R7/223-284      DE RNA polymerase factor sigma-54
#=GS T1A7R7/223-284      DR GENE3D; 60de46b3f238e8d57070f1f9242b1273/223-284; 
#=GS T1A7R7/223-284      DR ORG; mine drainage metagenome; 
#=GS H0PWV3/320-388      AC H0PWV3
#=GS H0PWV3/320-388      OS Azoarcus sp. KH32C
#=GS H0PWV3/320-388      DE RNA polymerase sigma-54 factor
#=GS H0PWV3/320-388      DR GENE3D; f9bea26a7fe0a1f8472b0e12580c2808/320-388; 
#=GS H0PWV3/320-388      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus; Azoarcus sp. KH32C; 
#=GS E6PVK7/336-399      AC E6PVK7
#=GS E6PVK7/336-399      OS mine drainage metagenome
#=GS E6PVK7/336-399      DE Sigma N (Sigma 54) factor of RNA polymerase
#=GS E6PVK7/336-399      DR GENE3D; d84c0d89d5b4b7fc6b3d61c861b15f5f/336-399; 
#=GS E6PVK7/336-399      DR ORG; mine drainage metagenome; 
#=GS F4GUX0/294-367      AC F4GUX0
#=GS F4GUX0/294-367      OS Pusillimonas sp. T7-7
#=GS F4GUX0/294-367      DE RNA polymerase sigma-54 factor
#=GS F4GUX0/294-367      DR GENE3D; 4af9b97881e0f79b5f784be8c640ef30/294-367; 
#=GS F4GUX0/294-367      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas; Pusillimonas sp. T7-7; 
#=GS A0A091BL05/329-391  AC A0A091BL05
#=GS A0A091BL05/329-391  OS Arenimonas composti TR7-09 = DSM 18010
#=GS A0A091BL05/329-391  DE RNA polymerase sigma-54 factor
#=GS A0A091BL05/329-391  DR GENE3D; 2ae935582304948d45e80658c1b0e310/329-391; 
#=GS A0A091BL05/329-391  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas; Arenimonas composti; 
#=GS A6GM69/365-430      AC A6GM69
#=GS A6GM69/365-430      OS Limnobacter sp. MED105
#=GS A6GM69/365-430      DE RNA polymerase sigma-54 factor
#=GS A6GM69/365-430      DR GENE3D; 6d5551550a0502b0351fd1574e851fea/365-430; 
#=GS A6GM69/365-430      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter; Limnobacter sp. MED105; 
#=GS C7R9H7/341-404      AC C7R9H7
#=GS C7R9H7/341-404      OS Kangiella koreensis DSM 16069
#=GS C7R9H7/341-404      DE RNA polymerase sigma-54 factor
#=GS C7R9H7/341-404      DR GENE3D; 06a183a20f456f53832d948497a97069/341-404; 
#=GS C7R9H7/341-404      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Kangiellaceae; Kangiella; Kangiella koreensis; 
#=GS A0A091B5J3/326-389  AC A0A091B5J3
#=GS A0A091B5J3/326-389  OS Arenimonas malthae CC-JY-1
#=GS A0A091B5J3/326-389  DE RNA polymerase sigma-54 factor
#=GS A0A091B5J3/326-389  DR GENE3D; 583d0b91e53e2ce8f29814aebd1ca38e/326-389; 
#=GS A0A091B5J3/326-389  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas; Arenimonas malthae; 
#=GS Q5P3S1/320-388      AC Q5P3S1
#=GS Q5P3S1/320-388      OS Aromatoleum aromaticum EbN1
#=GS Q5P3S1/320-388      DE RNA polymerase sigma-54 factor
#=GS Q5P3S1/320-388      DR GENE3D; f81f4c6ec6d7069b89bb825b8d799690/320-388; 
#=GS Q5P3S1/320-388      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum; Aromatoleum aromaticum; 
#=GF TC 105.2 8.1E-34
#=GF SQ 14
A4BQM1/317-403              SQYAGLVRRGDNSRDNSVMRQHLQEARWLIKSLHSRNETLLKVAQCIVERQQDFLEYGEEAMKPLVLREVAEAINMHESTVSRITSQ-------------
E2RWF1/155-222              -------------------ARALQEARWLIRSLEQRNSTILRVAQAIVARQQTFFDYGDVALRPLMLSEIAEELNMHESTVSRATSN-------------
A0A087MJH9/323-386          --------------------------RWLIKSLETRADTVERVARAIVRQQSAFLDHGNEAMRPLTLREVAEELGLHESTVSRATTRKYL----------
A1K2R6/329-397              ------------------LTSQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDHGEVAMRPLTLREIADQLELHESTVSRVTTQ-------------
V4YQK8/392-469              ---------ADKADDADNMQQRLQEARWFIKNIQQRFETILRVSSAIVERQQQFFIHGELAMKPMVLREIADELGLHESTISRVTTA-------------
T1A7R7/223-284              -------------------------ARWLIKSLQARADTLLRVAEAIVRQQSAFLDFGPEAMRPLVLREIAEEVGMHESTISRVTTR-------------
H0PWV3/320-388              ------------------LTSQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDYGDVAMRPLTLREIADQLELHESTVSRVTTQ-------------
E6PVK7/336-399              -----------------------QEARWFVRNVQQRFETIERVAQAVIERQQNFFSHGELGMRPLVLREIADELGLHESTISRVTTQ-------------
F4GUX0/294-367              -------------NERSLMAQELQEARWLLRSLEQRSNTIERVAQAIVARQQTFFDYGEIALRPLMLSEVADELGMHESTVSRATSH-------------
A0A091BL05/329-391          ------------------------EARWLIKSLETRADTLLRVARAIVRQQSGFLDHGSEAMRPLTLREVAEELGLHESTISRATTR-------------
A6GM69/365-430              ----------------------------------QRFDTILRVSQAIVERQIGYFNHGEIAMQPLVLREIADLLGLHESTVSRVTTQKYMLTPYGLVELK
C7R9H7/341-404              ------------------------RARWFMQSIEARNDTLKRVADWIVQHQQNFFDCGESALRPMRLKDLAEDLKLHESTISRACSDK------------
A0A091B5J3/326-389          --------------------------RWLIKSLETRADTLVRVARAIVRQQSAFLDHGHEAMRPLTLREVAEELGLHESTISRATTRKYL----------
Q5P3S1/320-388              ------------------LTSQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDYGEVAMRPLTLREIADQLELHESTVSRVTTQ-------------
#=GC scorecons              0000000000000000001010123577555544493696489656884694386569538779749686974757999979957640000000000000
#=GC scorecons_70           __________________________**_______*_**__***_***__*__**__*__*****_******_*_********_**______________
#=GC scorecons_80           __________________________**_______*__*__**___**__*__*___*__**_**_*_*_*__*__****_**_*_______________
#=GC scorecons_90           ___________________________________*__*__**___**__*__*___*__*__*__*_*_*_____****_**_________________
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