# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/235221
#=GF DE Sigma factor A isoform 2
#=GF AC 1.10.10.10/FF/235221
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 24.080
#=GS O24629/334-385      AC O24629
#=GS O24629/334-385      OS Arabidopsis thaliana
#=GS O24629/334-385      DE RNA polymerase sigma factor sigA
#=GS O24629/334-385      DR GENE3D; 5b5e8c93b592e985f84794a34790c1c4/334-385; 
#=GS O24629/334-385      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O24629/334-385      DR GO; GO:0001053; GO:0005515; GO:0006352; GO:0006355; GO:0009507; GO:0016987; GO:0071461; GO:0071482; GO:0080005; GO:2001141; 
#=GS F6HE86/409-461      AC F6HE86
#=GS F6HE86/409-461      OS Vitis vinifera
#=GS F6HE86/409-461      DE Putative uncharacterized protein
#=GS F6HE86/409-461      DR GENE3D; 999cc2aa53bc22aa35670a9eacd9a5fe/409-461; 
#=GS F6HE86/409-461      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Vitales; Vitaceae; Vitis; Vitis vinifera; 
#=GS A0A078J1Z3/323-374  AC A0A078J1Z3
#=GS A0A078J1Z3/323-374  OS Brassica napus
#=GS A0A078J1Z3/323-374  DE BnaA02g20170D protein
#=GS A0A078J1Z3/323-374  DR GENE3D; 1b0b25ee2b2f4c98e4ed0d779291a501/323-374; 
#=GS A0A078J1Z3/323-374  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS D7KZ14/335-386      AC D7KZ14
#=GS D7KZ14/335-386      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KZ14/335-386      DE RNA polymerase sigma subunit 1
#=GS D7KZ14/335-386      DR GENE3D; 460f387d999849878b32e64c75ab58de/335-386; 
#=GS D7KZ14/335-386      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS V4LCW0/351-402      AC V4LCW0
#=GS V4LCW0/351-402      OS Eutrema salsugineum
#=GS V4LCW0/351-402      DE Uncharacterized protein
#=GS V4LCW0/351-402      DR GENE3D; 7996a0f991eebd57a2cda697d8261d31/351-402; 
#=GS V4LCW0/351-402      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS M4CWB6/324-375      AC M4CWB6
#=GS M4CWB6/324-375      OS Brassica rapa subsp. pekinensis
#=GS M4CWB6/324-375      DE Uncharacterized protein
#=GS M4CWB6/324-375      DR GENE3D; 7f03314532d76cb5e122941e042f95af/324-375; 
#=GS M4CWB6/324-375      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A0D3AS29/316-367  AC A0A0D3AS29
#=GS A0A0D3AS29/316-367  OS Brassica oleracea var. oleracea
#=GS A0A0D3AS29/316-367  DE Uncharacterized protein
#=GS A0A0D3AS29/316-367  DR GENE3D; 8d2fb569ec11e47e1ff316e73b2bb5ab/316-367; 
#=GS A0A0D3AS29/316-367  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A067L4Y3/340-391  AC A0A067L4Y3
#=GS A0A067L4Y3/340-391  OS Jatropha curcas
#=GS A0A067L4Y3/340-391  DE Uncharacterized protein
#=GS A0A067L4Y3/340-391  DR GENE3D; d154663bd0e51c1881966b7cd4f83f38/340-391; 
#=GS A0A067L4Y3/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha; Jatropha curcas; 
#=GS A0A078ISK2/312-363  AC A0A078ISK2
#=GS A0A078ISK2/312-363  OS Brassica napus
#=GS A0A078ISK2/312-363  DE BnaCnng23900D protein
#=GS A0A078ISK2/312-363  DR GENE3D; d4c54d8332fabe3028ed20472ef6a338/312-363; 
#=GS A0A078ISK2/312-363  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS O49935/313-364      AC O49935
#=GS O49935/313-364      OS Sinapis alba
#=GS O49935/313-364      DE Sig1 protein
#=GS O49935/313-364      DR GENE3D; f1003ddcec39892a0d856ccd14200f63/313-364; 
#=GS O49935/313-364      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Sinapis; Sinapis alba; 
#=GS R0GH75/353-404      AC R0GH75
#=GS R0GH75/353-404      OS Capsella rubella
#=GS R0GH75/353-404      DE Uncharacterized protein
#=GS R0GH75/353-404      DR GENE3D; f1228cbd11f5a3d7883a523f4a57245d/353-404; 
#=GS R0GH75/353-404      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS B9IPY1/341-392      AC B9IPY1
#=GS B9IPY1/341-392      OS Populus trichocarpa
#=GS B9IPY1/341-392      DE RNA POLYMERASE SIGMA SUBUNIT 1 family protein
#=GS B9IPY1/341-392      DR GENE3D; d582482f60e5d898236afd57ac70ab87/341-392; 
#=GS B9IPY1/341-392      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS A0A061F045/340-391  AC A0A061F045
#=GS A0A061F045/340-391  OS Theobroma cacao
#=GS A0A061F045/340-391  DE Sigma factor A isoform 1
#=GS A0A061F045/340-391  DR GENE3D; 4f4e2fb729548a65d048f8b48a000872/340-391; 
#=GS A0A061F045/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; 
#=GS B9SDF8/340-391      AC B9SDF8
#=GS B9SDF8/340-391      OS Ricinus communis
#=GS B9SDF8/340-391      DE RNA polymerase sigma factor rpoD, putative
#=GS B9SDF8/340-391      DR GENE3D; c81bc8f0b498512612fb5dae65369b54/340-391; 
#=GS B9SDF8/340-391      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus; Ricinus communis; 
#=GS U5FHX1/341-392      AC U5FHX1
#=GS U5FHX1/341-392      OS Populus trichocarpa
#=GS U5FHX1/341-392      DE Uncharacterized protein
#=GS U5FHX1/341-392      DR GENE3D; 9fa106f105db8c6e95d923c2e8f11aa2/341-392; 
#=GS U5FHX1/341-392      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS A0A061F702/340-391  AC A0A061F702
#=GS A0A061F702/340-391  OS Theobroma cacao
#=GS A0A061F702/340-391  DE Sigma factor A isoform 2
#=GS A0A061F702/340-391  DR GENE3D; 06632128f4482bcdb7687e1ebaa2450d/340-391; 
#=GS A0A061F702/340-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; 
#=GS B9I6T5/331-382      AC B9I6T5
#=GS B9I6T5/331-382      OS Populus trichocarpa
#=GS B9I6T5/331-382      DE Uncharacterized protein
#=GS B9I6T5/331-382      DR GENE3D; abe276b90fee2a6b57a93cbec289fbe6/331-382; 
#=GS B9I6T5/331-382      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GF TC 130.3 1.4E-41
#=GF SQ 17
O24629/334-385              -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
F6HE86/409-461              TLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAIS
A0A078J1Z3/323-374          -LRLPTHLHERLGLIRNAKLRLQEKGVTPSIDRIAESLNMSQKKVRNATEAVS
D7KZ14/335-386              -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
V4LCW0/351-402              -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
M4CWB6/324-375              -LRLPTHLHERLGLIRNAKLRLQEKGVTPSIDRIAESLNMSQKKVRNATEAVS
A0A0D3AS29/316-367          -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
A0A067L4Y3/340-391          -LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQKKVRNATEAIS
A0A078ISK2/312-363          -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
O49935/313-364              -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
R0GH75/353-404              -LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS
B9IPY1/341-392              -LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAIS
A0A061F045/340-391          -LRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
B9SDF8/340-391              -LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVS
U5FHX1/341-392              -LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAIS
A0A061F702/340-391          -LRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVS
B9I6T5/331-382              -LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAIS
#=GC scorecons              09999599999979999996996999799799999979989979999999979
#=GC scorecons_70           _****_***********************************************
#=GC scorecons_80           _****_*************_**_***_************************_*
#=GC scorecons_90           _****_******_******_**_***_**_******_*****_********_*
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