# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/173052
#=GF DE RNA polymerase sigma factor SigM
#=GF AC 1.10.10.10/FF/173052
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 30.252
#=GS O53590/128-186      AC O53590
#=GS O53590/128-186      OS Mycobacterium tuberculosis H37Rv
#=GS O53590/128-186      DE ECF RNA polymerase sigma factor SigM
#=GS O53590/128-186      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS O53590/128-186      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS O53590/128-186      DR GO; GO:0005886; GO:0009410; GO:0009415; GO:0045893; 
#=GS X8BJY4/117-178      AC X8BJY4
#=GS X8BJY4/117-178      OS Mycobacterium xenopi 3993
#=GS X8BJY4/117-178      DE RNA polymerase sigma factor, sigma-70 family protein
#=GS X8BJY4/117-178      DR GENE3D; 1701720f14031308f7ffe2b6da339fff/117-178; 
#=GS X8BJY4/117-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium xenopi; 
#=GS X8CL91/117-178      AC X8CL91
#=GS X8CL91/117-178      OS Mycobacterium xenopi 4042
#=GS X8CL91/117-178      DE RNA polymerase sigma factor, sigma-70 family protein
#=GS X8CL91/117-178      DR GENE3D; 1701720f14031308f7ffe2b6da339fff/117-178; 
#=GS X8CL91/117-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium xenopi; 
#=GS A5U9N9/128-186      AC A5U9N9
#=GS A5U9N9/128-186      OS Mycobacterium tuberculosis H37Ra
#=GS A5U9N9/128-186      DE RNA polymerase sigma-70 factor
#=GS A5U9N9/128-186      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A5U9N9/128-186      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A1A9EDZ6/128-186  AC A0A1A9EDZ6
#=GS A0A1A9EDZ6/128-186  OS Mycobacterium bovis
#=GS A0A1A9EDZ6/128-186  DE ECF RNA polymerase sigma factor SigM
#=GS A0A1A9EDZ6/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A1A9EDZ6/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS M8CTQ2/128-186      AC M8CTQ2
#=GS M8CTQ2/128-186      OS Mycobacterium orygis 112400015
#=GS M8CTQ2/128-186      DE RNA polymerase sigma factor SigM
#=GS M8CTQ2/128-186      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS M8CTQ2/128-186      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium orygis; 
#=GS A0A045KCY9/128-186  AC A0A045KCY9
#=GS A0A045KCY9/128-186  OS Mycobacterium tuberculosis
#=GS A0A045KCY9/128-186  DE RNA polymerase alternative sigma factor sigM
#=GS A0A045KCY9/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A045KCY9/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A120J3N8/128-186  AC A0A120J3N8
#=GS A0A120J3N8/128-186  OS Mycobacterium africanum
#=GS A0A120J3N8/128-186  DE ECF RNA polymerase sigma factor SigM
#=GS A0A120J3N8/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A120J3N8/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium africanum; 
#=GS A0A0K2I2Y3/128-186  AC A0A0K2I2Y3
#=GS A0A0K2I2Y3/128-186  OS Mycobacterium bovis BCG
#=GS A0A0K2I2Y3/128-186  DE ECF RNA polymerase sigma factor SigM
#=GS A0A0K2I2Y3/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A0K2I2Y3/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS A0A109SSU3/128-186  AC A0A109SSU3
#=GS A0A109SSU3/128-186  OS Mycobacterium microti
#=GS A0A109SSU3/128-186  DE ECF RNA polymerase sigma factor SigM
#=GS A0A109SSU3/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A109SSU3/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium microti; 
#=GS A0A0G2PF27/128-186  AC A0A0G2PF27
#=GS A0A0G2PF27/128-186  OS Mycobacterium bovis BCG str. Pasteur 1173P2
#=GS A0A0G2PF27/128-186  DE Possible alternative RNA polymerase sigma factor sigMa [first part]
#=GS A0A0G2PF27/128-186  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/128-186; 
#=GS A0A0G2PF27/128-186  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS A0A0T9F5U1/11-95    AC A0A0T9F5U1
#=GS A0A0T9F5U1/11-95    OS Mycobacterium tuberculosis
#=GS A0A0T9F5U1/11-95    DE RNA polymerase alternative sigma factor sigM
#=GS A0A0T9F5U1/11-95    DR GENE3D; 39a11f8d9f6d55a680e63b3fa09f7fba/11-95; 
#=GS A0A0T9F5U1/11-95    DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS I0RXL2/117-178      AC I0RXL2
#=GS I0RXL2/117-178      OS Mycobacterium xenopi RIVM700367
#=GS I0RXL2/117-178      DE RNA polymerase sigma factor SigM
#=GS I0RXL2/117-178      DR GENE3D; 6441a25827effdfb417a1e0534567789/117-178; 
#=GS I0RXL2/117-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium xenopi; 
#=GS V7MPM4/122-178      AC V7MPM4
#=GS V7MPM4/122-178      OS Mycobacterium avium subsp. hominissuis 10-5606
#=GS V7MPM4/122-178      DE RNA polymerase sigma factor SigM
#=GS V7MPM4/122-178      DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS V7MPM4/122-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; Mycobacterium avium subsp. hominissuis; 
#=GS A0A0H2ZVN4/122-178  AC A0A0H2ZVN4
#=GS A0A0H2ZVN4/122-178  OS Mycobacterium avium 104
#=GS A0A0H2ZVN4/122-178  DE RNA polymerase sigma-70 factor
#=GS A0A0H2ZVN4/122-178  DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS A0A0H2ZVN4/122-178  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; 
#=GS Q73RU1/122-178      AC Q73RU1
#=GS Q73RU1/122-178      OS Mycobacterium avium subsp. paratuberculosis K-10
#=GS Q73RU1/122-178      DE SigM
#=GS Q73RU1/122-178      DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS Q73RU1/122-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; Mycobacterium avium subsp. paratuberculosis; 
#=GS V7IZM0/122-178      AC V7IZM0
#=GS V7IZM0/122-178      OS Mycobacterium avium 05-4293
#=GS V7IZM0/122-178      DE RNA polymerase sigma factor SigM
#=GS V7IZM0/122-178      DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS V7IZM0/122-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; 
#=GS A0A049DUJ8/122-178  AC A0A049DUJ8
#=GS A0A049DUJ8/122-178  OS Mycobacterium avium XTB13-223
#=GS A0A049DUJ8/122-178  DE Sigma-70 family RNA polymerase sigma factor SigM
#=GS A0A049DUJ8/122-178  DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS A0A049DUJ8/122-178  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; 
#=GS A0A0E2WF06/122-178  AC A0A0E2WF06
#=GS A0A0E2WF06/122-178  OS Mycobacterium avium subsp. hominissuis 101
#=GS A0A0E2WF06/122-178  DE RNA polymerase sigma factor SigM
#=GS A0A0E2WF06/122-178  DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS A0A0E2WF06/122-178  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; Mycobacterium avium subsp. hominissuis; 
#=GS T2GZM3/122-178      AC T2GZM3
#=GS T2GZM3/122-178      OS Mycobacterium avium subsp. hominissuis TH135
#=GS T2GZM3/122-178      DE RNA polymerase sigma factor SigM
#=GS T2GZM3/122-178      DR GENE3D; b770b59bdf9e83a5cdd4f2f390af6656/122-178; 
#=GS T2GZM3/122-178      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium; Mycobacterium avium subsp. hominissuis; 
#=GS D5PA10/124-179      AC D5PA10
#=GS D5PA10/124-179      OS Mycobacterium parascrofulaceum ATCC BAA-614
#=GS D5PA10/124-179      DE RNA polymerase sigma factor SigM
#=GS D5PA10/124-179      DR GENE3D; 9f411ad3bed0e250c2507d35635a6974/124-179; 
#=GS D5PA10/124-179      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium parascrofulaceum; 
#=GF TC 128.3 1.9E-41
#=GF SQ 21
O53590/128-186              -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
X8BJY4/117-178              ----------------------VETAIVVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAALLG-
X8CL91/117-178              ----------------------VETAIVVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAALLG-
A5U9N9/128-186              -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A1A9EDZ6/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
M8CTQ2/128-186              -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A045KCY9/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A120J3N8/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A0K2I2Y3/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A109SSU3/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A0G2PF27/128-186          -------------------------AIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLG-
A0A0T9F5U1/11-95            RAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLGY
I0RXL2/117-178              ----------------------VETAIVVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAALLG-
V7MPM4/122-178              ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
A0A0H2ZVN4/122-178          ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
Q73RU1/122-178              ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
V7IZM0/122-178              ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
A0A049DUJ8/122-178          ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
A0A0E2WF06/122-178          ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
T2GZM3/122-178              ---------------------------AVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLG-
D5PA10/124-179              -----------------------------QRALMRLPVEQRAAVVAVDMQGYSVADTAALLGVAEGTVKSRCARARARLAGLLGY
#=GC scorecons              0000000000000000000000000336799999999999999799999999979999869999999999999999699949990
#=GC scorecons_70           ____________________________****************************************************_***_
#=GC scorecons_80           ____________________________*******************************_****************_***_***_
#=GC scorecons_90           _____________________________**************_*********_****__****************_***_***_
//