# STOCKHOLM 1.0 #=GF ID 1.10.10.10/FF/148681 #=GF DE RNA polymerase sigma factor SigA #=GF AC 1.10.10.10/FF/148681 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 35.053 #=GS 3wodF02/341-423 AC Q5SKW1 #=GS 3wodF02/341-423 OS Thermus thermophilus HB8 #=GS 3wodF02/341-423 DE RNA polymerase sigma factor SigA #=GS 3wodF02/341-423 DR CATH; 3wod; F:341-412; #=GS 3wodF02/341-423 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus thermophilus; #=GS 1ku3A00/1-73 AC Q9EZJ8 #=GS 1ku3A00/1-73 OS Thermus aquaticus #=GS 1ku3A00/1-73 DE RNA polymerase sigma factor SigA #=GS 1ku3A00/1-73 DR CATH; 1ku3; A:368-428; #=GS 1ku3A00/1-73 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus aquaticus; #=GS 1rioH00/1-73 AC Q9EZJ8 #=GS 1rioH00/1-73 OS Thermus aquaticus #=GS 1rioH00/1-73 DE RNA polymerase sigma factor SigA #=GS 1rioH00/1-73 DR CATH; 1rio; H:366-426; #=GS 1rioH00/1-73 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus aquaticus; #=GS Q5SKW1/339-420 AC Q5SKW1 #=GS Q5SKW1/339-420 OS Thermus thermophilus HB8 #=GS Q5SKW1/339-420 DE RNA polymerase sigma factor SigA #=GS Q5SKW1/339-420 DR GENE3D; ae586265eb9ea1c949dd99d7ed5f6327/339-420; #=GS Q5SKW1/339-420 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus thermophilus; #=GS 1ku7A00/1-73 AC Q9EZJ8 #=GS 1ku7A00/1-73 OS Thermus aquaticus #=GS 1ku7A00/1-73 DE RNA polymerase sigma factor SigA #=GS 1ku7A00/1-73 DR CATH; 1ku7; A:366-438; #=GS 1ku7A00/1-73 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus aquaticus; #=GS 1ku7D00/1-73 AC Q9EZJ8 #=GS 1ku7D00/1-73 OS Thermus aquaticus #=GS 1ku7D00/1-73 DE RNA polymerase sigma factor SigA #=GS 1ku7D00/1-73 DR CATH; 1ku7; D:371-438; #=GS 1ku7D00/1-73 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus aquaticus; #=GS M9XDA5/435-516 AC M9XDA5 #=GS M9XDA5/435-516 OS Meiothermus ruber DSM 1279 #=GS M9XDA5/435-516 DE RNA polymerase sigma factor SigA #=GS M9XDA5/435-516 DR GENE3D; 81e0dcc29ee33b097d6b6a544c66dba0/435-516; #=GS M9XDA5/435-516 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus; Meiothermus ruber; #=GS A0A0A7KFQ9/476-556 AC A0A0A7KFQ9 #=GS A0A0A7KFQ9/476-556 OS Deinococcus swuensis #=GS A0A0A7KFQ9/476-556 DE RNA polymerase sigma factor SigA #=GS A0A0A7KFQ9/476-556 DR GENE3D; a594413298c8e3da32fa52f03f700244/476-556; #=GS A0A0A7KFQ9/476-556 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus swuensis; #=GS A0A0X8D8M5/339-420 AC A0A0X8D8M5 #=GS A0A0X8D8M5/339-420 OS Thermus parvatiensis #=GS A0A0X8D8M5/339-420 DE RNA polymerase sigma factor SigA #=GS A0A0X8D8M5/339-420 DR GENE3D; 16f68e5b36e75beed35e498af5b7524a/339-420; #=GS A0A0X8D8M5/339-420 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus parvatiensis; #=GS Q72L95/339-420 AC Q72L95 #=GS Q72L95/339-420 OS Thermus thermophilus HB27 #=GS Q72L95/339-420 DE RNA polymerase sigma factor SigA #=GS Q72L95/339-420 DR GENE3D; 16f68e5b36e75beed35e498af5b7524a/339-420; #=GS Q72L95/339-420 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus thermophilus; #=GS H9ZSW2/339-420 AC H9ZSW2 #=GS H9ZSW2/339-420 OS Thermus thermophilus JL-18 #=GS H9ZSW2/339-420 DE RNA polymerase sigma factor SigA #=GS H9ZSW2/339-420 DR GENE3D; 16f68e5b36e75beed35e498af5b7524a/339-420; #=GS H9ZSW2/339-420 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus thermophilus; #=GS G8NBF6/351-432 AC G8NBF6 #=GS G8NBF6/351-432 OS Thermus sp. CCB_US3_UF1 #=GS G8NBF6/351-432 DE RNA polymerase sigma factor SigA #=GS G8NBF6/351-432 DR GENE3D; b283a57f958c24b30c1cf25174206f58/351-432; #=GS G8NBF6/351-432 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus sp. CCB_US3_UF1; #=GS A0A0B0SEH3/354-435 AC A0A0B0SEH3 #=GS A0A0B0SEH3/354-435 OS Thermus sp. 2.9 #=GS A0A0B0SEH3/354-435 DE RNA polymerase sigma factor SigA #=GS A0A0B0SEH3/354-435 DR GENE3D; ea8f47e724dd68c2457f0cb2d5123f4f/354-435; #=GS A0A0B0SEH3/354-435 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus sp. 2.9; #=GS A0A1J0LUL3/354-435 AC A0A1J0LUL3 #=GS A0A1J0LUL3/354-435 OS Thermus brockianus #=GS A0A1J0LUL3/354-435 DE RNA polymerase sigma factor SigA #=GS A0A1J0LUL3/354-435 DR GENE3D; ea8f47e724dd68c2457f0cb2d5123f4f/354-435; #=GS A0A1J0LUL3/354-435 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus brockianus; #=GS A0A072N8V1/447-527 AC A0A072N8V1 #=GS A0A072N8V1/447-527 OS Deinococcus sp. RL #=GS A0A072N8V1/447-527 DE RNA polymerase sigma factor SigA #=GS A0A072N8V1/447-527 DR GENE3D; 445a51e3c87eaedacf7e0717c3175d77/447-527; #=GS A0A072N8V1/447-527 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus sp. RL; #=GS F0RJ81/404-484 AC F0RJ81 #=GS F0RJ81/404-484 OS Deinococcus proteolyticus MRP #=GS F0RJ81/404-484 DE RNA polymerase sigma factor SigA #=GS F0RJ81/404-484 DR GENE3D; 8e1646c3f4e271eac34ac3eb784bcd7b/404-484; #=GS F0RJ81/404-484 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus proteolyticus; #=GS E8UA75/442-522 AC E8UA75 #=GS E8UA75/442-522 OS Deinococcus maricopensis DSM 21211 #=GS E8UA75/442-522 DE RNA polymerase sigma factor SigA #=GS E8UA75/442-522 DR GENE3D; bda37015fe0b03f3511658fee839eec3/442-522; #=GS E8UA75/442-522 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus maricopensis; #=GS D7BII2/399-480 AC D7BII2 #=GS D7BII2/399-480 OS Meiothermus silvanus DSM 9946 #=GS D7BII2/399-480 DE RNA polymerase sigma factor SigA #=GS D7BII2/399-480 DR GENE3D; 7178e5aca8f1eaa4eedd1315be7b0754/399-480; #=GS D7BII2/399-480 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus; Meiothermus silvanus; #=GS Q9EZJ8/354-435 AC Q9EZJ8 #=GS Q9EZJ8/354-435 OS Thermus aquaticus #=GS Q9EZJ8/354-435 DE RNA polymerase sigma factor SigA #=GS Q9EZJ8/354-435 DR GENE3D; 9040d8c6bf67363b6448c70059d402d3/354-435; #=GS Q9EZJ8/354-435 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus aquaticus; #=GS A0A0A2XBL1/372-453 AC A0A0A2XBL1 #=GS A0A0A2XBL1/372-453 OS Thermus filiformis #=GS A0A0A2XBL1/372-453 DE RNA polymerase sigma factor SigA #=GS A0A0A2XBL1/372-453 DR GENE3D; 26c97e54f1f84ddd421dcc3d6623393e/372-453; #=GS A0A0A2XBL1/372-453 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus filiformis; #=GS D7CWA1/363-443 AC D7CWA1 #=GS D7CWA1/363-443 OS Truepera radiovictrix DSM 17093 #=GS D7CWA1/363-443 DE RNA polymerase sigma factor SigA #=GS D7CWA1/363-443 DR GENE3D; c248a6bd2575c52ea6bd864b9692c345/363-443; #=GS D7CWA1/363-443 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera; Truepera radiovictrix; #=GS E4U8Q9/400-481 AC E4U8Q9 #=GS E4U8Q9/400-481 OS Oceanithermus profundus DSM 14977 #=GS E4U8Q9/400-481 DE RNA polymerase sigma factor SigA #=GS E4U8Q9/400-481 DR GENE3D; b9ea6059264e2cdba6be5baa78bc45d4/400-481; #=GS E4U8Q9/400-481 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus; Oceanithermus profundus; #=GS C1CW22/464-544 AC C1CW22 #=GS C1CW22/464-544 OS Deinococcus deserti VCD115 #=GS C1CW22/464-544 DE RNA polymerase sigma factor SigA #=GS C1CW22/464-544 DR GENE3D; 876d68aa5b4a4b5ec0c1f30156ff6f42/464-544; #=GS C1CW22/464-544 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus deserti; #=GS E8PMQ4/410-491 AC E8PMQ4 #=GS E8PMQ4/410-491 OS Thermus scotoductus SA-01 #=GS E8PMQ4/410-491 DE RNA polymerase sigma factor SigA #=GS E8PMQ4/410-491 DR GENE3D; 1c8f301c23292de5edfd0b27f97ba12a/410-491; #=GS E8PMQ4/410-491 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus scotoductus; #=GS K7QYS1/350-431 AC K7QYS1 #=GS K7QYS1/350-431 OS Thermus oshimai JL-2 #=GS K7QYS1/350-431 DE RNA polymerase sigma factor SigA #=GS K7QYS1/350-431 DR GENE3D; c348e42e08b9406e11e0113381880c4b/350-431; #=GS K7QYS1/350-431 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus; Thermus oshimai; #=GS H8GZQ2/307-387 AC H8GZQ2 #=GS H8GZQ2/307-387 OS Deinococcus gobiensis I-0 #=GS H8GZQ2/307-387 DE RNA polymerase sigma factor SigA #=GS H8GZQ2/307-387 DR GENE3D; edcec307d797e5d699ced20f6b880e54/307-387; #=GS H8GZQ2/307-387 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus gobiensis; #=GS Q1J156/449-529 AC Q1J156 #=GS Q1J156/449-529 OS Deinococcus geothermalis DSM 11300 #=GS Q1J156/449-529 DE RNA polymerase sigma factor SigA #=GS Q1J156/449-529 DR GENE3D; 987d08a4f93d0a85083a0b00a2e3e8ae/449-529; #=GS Q1J156/449-529 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus geothermalis; #=GS F2NPB4/393-474 AC F2NPB4 #=GS F2NPB4/393-474 OS Marinithermus hydrothermalis DSM 14884 #=GS F2NPB4/393-474 DE RNA polymerase sigma factor SigA #=GS F2NPB4/393-474 DR GENE3D; 1c61fe42f5612e0d0fe021f6f4a1c757/393-474; #=GS F2NPB4/393-474 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus; Marinithermus hydrothermalis; #=GS A0A016QUH6/408-488 AC A0A016QUH6 #=GS A0A016QUH6/408-488 OS Deinococcus phoenicis #=GS A0A016QUH6/408-488 DE RNA polymerase sigma factor SigA #=GS A0A016QUH6/408-488 DR GENE3D; 6db439b0536bf671a91639e31df42486/408-488; #=GS A0A016QUH6/408-488 DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus phoenicis; #=GF TC 173.2 9.1E-55 #=GF SQ 29 3wodF02/341-423 --PVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD 1ku3A00/1-73 ------------SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 1rioH00/1-73 ------------SEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE Q5SKW1/339-420 PSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- 1ku7A00/1-73 ------------SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 1ku7D00/1-73 ------------SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE M9XDA5/435-516 ASPVDSAAQSMLSEELEKALGKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A0A7KFQ9/476-556 -SPVDNAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A0X8D8M5/339-420 PSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- Q72L95/339-420 PSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- H9ZSW2/339-420 PSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- G8NBF6/351-432 PSPSEAAAQTLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A0B0SEH3/354-435 PSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A1J0LUL3/354-435 PSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A072N8V1/447-527 -SPVDNAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRD--- F0RJ81/404-484 -SPVDNAAKTLLSEELEKALGKLTEREAMVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRD--- E8UA75/442-522 -SPVENAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRD--- D7BII2/399-480 ASPVDSAAQSMLSEELEKALGKLSDREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- Q9EZJ8/354-435 PSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A0A2XBL1/372-453 PSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD--- D7CWA1/363-443 -SPVDQASKTLLSEELEKALDKLTERESMVLKFRKGLVDGREHTLEEVGAHFGVTRERIRQIENKALRKLKYHESRTRKLRD--- E4U8Q9/400-481 ASPVDSAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- C1CW22/464-544 -SPVENAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRKLRD--- E8PMQ4/410-491 PSPVDAAAQSLLAEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- K7QYS1/350-431 PSPSEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- H8GZQ2/307-387 -SPVDNAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRKLRD--- Q1J156/449-529 -SPVDNAAKTLLSEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRD--- F2NPB4/393-474 ASPVDAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRD--- A0A016QUH6/408-488 -SPVDNAAKTLLSEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRKLRD--- #=GC scorecons 0444424333448999999979968998899959999799999999999659699999999999999999999999999999000 #=GC scorecons_70 ____________********************_*****************_*******************************___ #=GC scorecons_80 ____________***********_********_****************__*_*****************************___ #=GC scorecons_90 ____________********_**_********_****_***********__*_*****************************___ //